Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p35830 Brassica napus
A04p31810 Brassica napus
A06p40630 Brassica napus
A07p23440 Brassica napus
A09p50350 Brassica napus
Aa31LG10G12330 Aethionema arabicum
Aa31LG1G23850 Aethionema arabicum
Aa31LG2G4700 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2770 Anthoceros agrestis
Actinidia33974 Actinidia chinensis
Actinidia38550 Actinidia chinensis
Ah.16g106990 Amaranthus hybridus
AL4G40160 Arabidopsis lyrata
AL5G17700 Arabidopsis lyrata
AL5G39060 Arabidopsis lyrata
Aqoxy1G00287 Aquilegia oxysepala
Aqoxy3G03105 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.FK7XM9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TLYY08 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UBVB2N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XE45GC Arachis hypogaea
AT2G41835 Arabidopsis thaliana
AT3G28210 Arabidopsis thaliana
AT3G57480 Arabidopsis thaliana
AT5G48205 Arabidopsis thaliana
ATR0332G049 Amborella trichopoda
ATR0580G395 Amborella trichopoda
Atru.chr1.1075 Acer truncatum
Atru.chr1.1076 Acer truncatum
Atru.chr8.2416 Acer truncatum
AUR62024434 Chenopodium quinoa
AUR62026026 Chenopodium quinoa
AUR62032081 Chenopodium quinoa
AUR62041854 Chenopodium quinoa
BcaB02g07600 Brassica carinata
BcaB06g29206 Brassica carinata
BcaC06g30926 Brassica carinata
BcaC06g33747 Brassica carinata
BcaC08g44847 Brassica carinata
BolC2t11533H Brassica oleracea
BolC4t28421H Brassica oleracea
BolC6t37602H Brassica oleracea
BolC7t44246H Brassica oleracea
BolC8t50902H Brassica oleracea
BraA02t08584Z Brassica rapa
BraA04t18639Z Brassica rapa
BraA06t26982Z Brassica rapa
BraA07t30007Z Brassica rapa
C02p54720 Brassica napus
C04p69220 Brassica napus
C06p24540 Brassica napus
C07p37370 Brassica napus
C08p33020 Brassica napus
CAN.G128.12 Capsicum annuum
CAN.G206.58 Capsicum annuum
CAN.G676.54 Capsicum annuum
CANSAT80G1048 Cannabis sativa
CARHR136920 Cardamine hirsuta
CARHR149860 Cardamine hirsuta
CARHR167700 Cardamine hirsuta
Carub.0004s2411 Capsella rubella
Carub.0005s0671 Capsella rubella
Carub.0005s2432 Capsella rubella
Ca_04226_v3 Cicer arietinum L.
Ca_12121_v3 Cicer arietinum L.
CBR_g37478 Chara braunii
Cc06_g16800 Coffea canephora
Cc07_g02610 Coffea canephora
CDE05G3061 Ceratophyllum demersum
CDE06G1068 Ceratophyllum demersum
Cfa007470 Carpinus fangiana
Cfa016829 Carpinus fangiana
Cfa024878 Carpinus fangiana
Ciclev10005558m.g Citrus clementina
Ciclev10012852m.g Citrus clementina
CiPaw.03G034400 Carya illinoinensis
CiPaw.09G037300 Carya illinoinensis
CiPaw.10G032700 Carya illinoinensis
ClCG04G003230 Citrullus lanatus
ClCG10G014550 Citrullus lanatus
COL.COLO4_06151 Corchorus olitorius
COL.COLO4_28238 Corchorus olitorius
Cpa.g.sc14.84 Carica papaya
Cpa.g.sc92.40 Carica papaya
Cre09.g389750 Chlamydomonas reinhardtii
CsaV3_3G042030 Cucumis sativus L.
CsaV3_4G011780 Cucumis sativus L.
CSS0007179 Camellia sinensis var. sinensis
CSS0019301 Camellia sinensis var. sinensis
DCAR_009058 Daucus carota
DCAR_013982 Daucus carota
Dinv18056 Davidia involucrata
Dinv35021 Davidia involucrata
Duzib093G1573 Durio zibethinus
Duzib106G0084 Durio zibethinus
Duzib147G1487 Durio zibethinus
Duzib264G0073 Durio zibethinus
ECA232G0623 Erigeron canadensis
ECA247G0089 Erigeron canadensis
ECA248G2709 Erigeron canadensis
EL10Ac2g03386 Beta vulgaris
EL10Ac3g07076 Beta vulgaris
Eucgr.A02369 Eucalyptus grandis
Eucgr.I01876 Eucalyptus grandis
FAN02G0801 Fragaria x ananassa
FAN02G4466 Fragaria x ananassa
FAN05G0523 Fragaria x ananassa
FAN05G0559 Fragaria x ananassa
FAN09G0252 Fragaria x ananassa
FAN09G1530 Fragaria x ananassa
FAN14G1577 Fragaria x ananassa
FAN14G1894 Fragaria x ananassa
FvH4_6g23600 Fragaria vesca
FvH4_6g50080 Fragaria vesca
Glyma.02G183100 Glycine max
Glyma.03G137500 Glycine max
Glyma.10G103400 Glycine max
Glyma.13G069200 Glycine max
Glyma.19G013700 Glycine max
Glyma.19G140400 Glycine max
Gohir.A01G196800 Gossypium hirsutum
Gohir.A07G217700 Gossypium hirsutum
Gohir.A09G123000 Gossypium hirsutum
Gohir.D01G187000 Gossypium hirsutum
Gohir.D07G224800 Gossypium hirsutum
Gohir.D09G120000 Gossypium hirsutum
Gorai.001G259200 Gossypium raimondii
Gorai.002G230400 Gossypium raimondii
Gorai.006G137400 Gossypium raimondii
GSVIVG01032538001 Vitis vinifera
GSVIVG01033300001 Vitis vinifera
HanXRQChr01g0009151 Helianthus annuus
HanXRQChr01g0026101 Helianthus annuus
HanXRQChr03g0089931 Helianthus annuus
HanXRQChr10g0300151 Helianthus annuus
Haze_14627 Corylus avellana
Haze_19874 Corylus avellana
Hma1.2p1_0247F.1_g101810 Hydrangea macrophylla
Hma1.2p1_0697F.1_g205040 Hydrangea macrophylla
Hma1.2p1_1975F.1_g309730 Hydrangea macrophylla
HPP92_000815 Vanilla planifolia
HPP92_015906 Vanilla planifolia
HPP92_017345 Vanilla planifolia
Hund20035 Selenicereus undatus
Hund24713 Selenicereus undatus
Lalb_Chr21g0319271 Lupinus albus
Lalb_Chr25g0287341 Lupinus albus
Lj1g0006947 Lotus japonicus
Lj2A382G17 Lonicera japonica
Lj2g0008756 Lotus japonicus
Lj5g0022145 Lotus japonicus
Lju124C38T4 Lonicera japonica
Lju41A30T63 Lonicera japonica
Lsat_1_v5_gn_4_180681 Lactuca sativa
Lsat_1_v5_gn_5_161641 Lactuca sativa
Lsat_1_v5_gn_9_28700 Lactuca sativa
Manes.09G023500 Manihot esculenta
Manes.15G180600 Manihot esculenta
Mapoly0054s0070 Marchantia polymorpha
MBI04_g41602_MAGBIO Magnolia biondii
MBI14_g12777_MAGBIO Magnolia biondii
MD09G1039300 Malus domestica
MD12G1077300 Malus domestica
MD14G1070700 Malus domestica
MD17G1040300 Malus domestica
Medtr0100s0160 Medicago truncatula
Medtr6g008210 Medicago truncatula
Medtr7g091810 Medicago truncatula
MELO3C009923.2 Cucumis melo
MELO3C023120.2 Cucumis melo
Migut.H00156 Erythranthe guttata
Migut.J01765 Erythranthe guttata
MSTRG.10820 Avicennia marina
MSTRG.19865 Avicennia marina
MSTRG.3194 Avicennia marina
Nitab4.5_0000733g0090 Nicotiana tabacum
Nitab4.5_0001509g0030 Nicotiana tabacum
Nitab4.5_0001952g0160 Nicotiana tabacum
Nitab4.5_0007185g0030 Nicotiana tabacum
Nitab4.5_0009344g0010 Nicotiana tabacum
Nitab4.5_0010347g0030 Nicotiana tabacum
Nn2g15289 Nelumbo nucifera
Nn4g22911 Nelumbo nucifera
Nn5g27586 Nelumbo nucifera
Nn7g36245 Nelumbo nucifera
Oeu017949.1 Olea europaea
Oeu060605.1 Olea europaea
Os07g0569700 Oryza sativa ssp. japonica
Os09g0385700 Oryza sativa ssp. japonica
Peaxi162Scf00129g00085 Petunia axillaris
Peaxi162Scf00354g00112 Petunia axillaris
Peaxi162Scf00493g00220 Petunia axillaris
PGR004G1925 Punica granatum
PGR142G1940 Punica granatum
PGSC0003DMG400000512 Solanum tuberosum
PGSC0003DMG400015629 Solanum tuberosum
PGSC0003DMG400023684 Solanum tuberosum
PGSC0003DMG400027241 Solanum tuberosum
Phvul.001G134900 Phaseolus vulgaris
Phvul.004G020300 Phaseolus vulgaris
Phvul.004G020400 Phaseolus vulgaris
Phvul.007G253000 Phaseolus vulgaris
Potri.006G052200 Populus trichocarpa
Potri.011G138500 Populus trichocarpa
Pp3c15_4950 Physcomitrium patens
Pp3c8_230 Physcomitrium patens
Pp3c8_25400 Physcomitrium patens
PRCOL_00003472 Prasinoderma coloniale
Prupe.3G278700 Prunus persica
Prupe.7G063400 Prunus persica
Prupe.7G063600 Prunus persica
Psat1g079520 Pisum sativum
Psat3g072280 Pisum sativum
Psat6g086360 Pisum sativum
PSO017G4329 Papaver somniferum
PSO675G1543 Papaver somniferum
PSO832G3305 Papaver somniferum
QL02p078161 Quercus lobata
QL07p000156 Quercus lobata
QL93p0205_0152 Quercus lobata
RcHm_v2.0_Chr2g0170351 Rosa chinensis
RcHm_v2.0_Chr3g0481751 Rosa chinensis
Rhsim04G0102000 Rhododendron simsii
Rhsim08G0057200 Rhododendron simsii
Rhsim08G0061400 Rhododendron simsii
Sabra06G0036700 Salix brachista
Sabra11G0124100 Salix brachista
SalBow1G0826 Salvia bowleyana
SalBow1G4658 Salvia bowleyana
SalBow6G5699 Salvia bowleyana
Sc13g0001810 Simmondsia chinensis
Sed0000928 Sechium edule
Sed0027679 Sechium edule
SEGI_03764 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30419 Striga asiatica
SGA_v2.0_scaffold135G34836 Striga asiatica
SGA_v2.0_scaffold20G09114 Striga asiatica
SGA_v2.0_scaffold36G14544 Striga asiatica
SGA_v2.0_scaffold47G17690 Striga asiatica
SGA_v2.0_scaffold88G27248 Striga asiatica
SMO137G0180 Selaginella moellendorffii
Solyc02g087210.3 Solanum lycopersicum
Solyc04g015570.3 Solanum lycopersicum
Solyc10g080200.2 Solanum lycopersicum
Sopen02g031950 Solanum pennellii
Sopen04g007640 Solanum pennellii
Sopen10g030810 Solanum pennellii
Sp2g17110 Schrenkiella parvula
Sp4g24100 Schrenkiella parvula
Sp5g05120 Schrenkiella parvula
TAR629G1987 Trochodendron aralioides
TAR633G2487 Trochodendron aralioides
THA.LOC104802142 Tarenaya hassleriana
THA.LOC104805418 Tarenaya hassleriana
Thecc.04G003400 Theobroma cacao
Thecc.05G157900 Theobroma cacao
Thhalv10004977m.g Eutrema salsugineum
Thhalv10006201m.g Eutrema salsugineum
Thhalv10017048m.g Eutrema salsugineum
TPR.G10619 Trifolium pratense
TPR.G31463 Trifolium pratense
TWI12G0639 Tripterygium wilfordii
TWI53G0361 Tripterygium wilfordii
TWI74G0436 Tripterygium wilfordii
vmacro09081 Vaccinium macrocarpon
vmacro18228 Vaccinium macrocarpon
VMungo0251G3299 Vigna mungo
VMungo0464G1545 Vigna mungo
VMungo0720G1826 Vigna mungo
VMungo0720G2988 Vigna mungo
VMungo1383G0394 Vigna mungo
Zm00001eb099020 Zea mays
Zm00001eb324750 Zea mays

User provided reference genes

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