Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p37630 Brassica napus
A05p36990 Brassica napus
A05p37000 Brassica napus
A10p28850 Brassica napus
Aa31sc1276G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2391 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.2890 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.2892 Anthoceros agrestis
Actinidia07005 Actinidia chinensis
Actinidia18374 Actinidia chinensis
Actinidia24486 Actinidia chinensis
Ah.01g004500 Amaranthus hybridus
Ah.10g029840 Amaranthus hybridus
AL3G24110 Arabidopsis lyrata
AL6G17230 Arabidopsis lyrata
AL6G31000 Arabidopsis lyrata
Aqoxy1G00059 Aquilegia oxysepala
Aqoxy2G00026_Aqoxy2G00027 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1YL9TV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CT41QQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FGGA0D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L34J1I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M21JET Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YA9X9Q Arachis hypogaea
AT3G12480 Arabidopsis thaliana
AT5G19490 Arabidopsis thaliana
ATR0307G117 Amborella trichopoda
ATR0709G046 Amborella trichopoda
Atru.chr4.883 Acer truncatum
AUR62031682 Chenopodium quinoa
AUR62031683 Chenopodium quinoa
AUR62032565 Chenopodium quinoa
AUR62032566 Chenopodium quinoa
BcaB03g16358 Brassica carinata
BcaB04g18672 Brassica carinata
BcaB04g18680 Brassica carinata
BcaB04g21076 Brassica carinata
BcaC06g32520 Brassica carinata
BcaC09g48244 Brassica carinata
BcaNung04199 Brassica carinata
BcaNung05711 Brassica carinata
BNapus_Darmor_BZH_scaffold_149p00010 Brassica napus
BolC1t05213H Brassica oleracea
BolC3t16839H Brassica oleracea
BolC9t59663H Brassica oleracea
BraA01t04134Z Brassica rapa
BraA03t12917Z Brassica rapa
BraA10t44932Z Brassica rapa
C01p52760 Brassica napus
C03p45620 Brassica napus
C09p69190 Brassica napus
CAN.G134.33 Capsicum annuum
CAN.G280.1 Capsicum annuum
CANSAT54G0417 Cannabis sativa
CANSAT56G2669 Cannabis sativa
CARHR086980 Cardamine hirsuta
CARHR193420 Cardamine hirsuta
CARHR206090 Cardamine hirsuta
Carub.0003s1181 Capsella rubella
Carub.0006s0598 Capsella rubella
Carub.0006s1784 Capsella rubella
Ca_14212_v3 Cicer arietinum L.
Ca_24030_v3 Cicer arietinum L.
CBR_g31500 Chara braunii
CBR_g34808 Chara braunii
Cc00_g08160 Coffea canephora
Cc01_g07160 Coffea canephora
CDE04G1622 Ceratophyllum demersum
CDE07G0320 Ceratophyllum demersum
Cfa010969 Carpinus fangiana
Cfa021683 Carpinus fangiana
Ciclev10002081m.g Citrus clementina
CiPaw.13G017100 Carya illinoinensis
CiPaw.14G010800 Carya illinoinensis
CiPaw.14G108000 Carya illinoinensis
CiPaw.14G108400 Carya illinoinensis
ClCG02G022540 Citrullus lanatus
ClCG11G013040 Citrullus lanatus
COL.COLO4_21328 Corchorus olitorius
COL.COLO4_33264 Corchorus olitorius
Cre16.g680050 Chlamydomonas reinhardtii
CsaV3_5G029530 Cucumis sativus L.
CsaV3_6G038670 Cucumis sativus L.
CSS0027937 Camellia sinensis var. sinensis
CSS0044836 Camellia sinensis var. sinensis
DCAR_006595 Daucus carota
DCAR_025311 Daucus carota
Dinv02126 Davidia involucrata
Dinv15412 Davidia involucrata
Dinv31538 Davidia involucrata
Dinv31993 Davidia involucrata
Duzib106G0143 Durio zibethinus
Duzib114G0058 Durio zibethinus
Duzib128G0493 Durio zibethinus
Duzib168G0048 Durio zibethinus
ECA234G0839 Erigeron canadensis
ECA238G0759 Erigeron canadensis
EL10Ac2g02715 Beta vulgaris
EL10Ac4g10060 Beta vulgaris
Eucgr.G03198 Eucalyptus grandis
Eucgr.J00664 Eucalyptus grandis
FAN01G0190 Fragaria x ananassa
FAN03G1474 Fragaria x ananassa
FAN03G2991 Fragaria x ananassa
FAN06G2510 Fragaria x ananassa
FAN06G4066 Fragaria x ananassa
FAN10G0413 Fragaria x ananassa
FAN10G0477 Fragaria x ananassa
FvH4_7g04210 Fragaria vesca
FvH4_7g06930 Fragaria vesca
Glyma.02G277000 Glycine max
Glyma.06G038200 Glycine max
Glyma.06G311400 Glycine max
Glyma.13G189400 Glycine max
Glyma.14G038800 Glycine max
Glyma.15G227300 Glycine max
Gohir.A05G072900 Gossypium hirsutum
Gohir.A05G396200 Gossypium hirsutum
Gohir.A06G173800 Gossypium hirsutum
Gohir.D04G018800 Gossypium hirsutum
Gohir.D05G075800 Gossypium hirsutum
Gohir.D06G183800 Gossypium hirsutum
Gorai.009G077100 Gossypium raimondii
Gorai.010G215200 Gossypium raimondii
Gorai.012G022300 Gossypium raimondii
GSVIVG01036581001 Vitis vinifera
GSVIVG01037394001 Vitis vinifera
HanXRQChr01g0005521 Helianthus annuus
HanXRQChr03g0091651 Helianthus annuus
HanXRQChr11g0341281 Helianthus annuus
HanXRQChr17g0564021 Helianthus annuus
Haze_02969 Corylus avellana
Haze_23547 Corylus avellana
Hma1.2p1_1468F.1_g285540 Hydrangea macrophylla
Hma1.2p1_1843F.1_g305040 Hydrangea macrophylla
Hma1.2p1_2592F.1_g325030 Hydrangea macrophylla
HPP92_002178 Vanilla planifolia
HPP92_002225 Vanilla planifolia
HPP92_012547 Vanilla planifolia
HPP92_013334 Vanilla planifolia
Hund13412 Selenicereus undatus
Hund21954 Selenicereus undatus
Lalb_Chr03g0032591 Lupinus albus
Lalb_Chr10g0106061 Lupinus albus
Lalb_Chr17g0347751 Lupinus albus
Lalb_Chr18g0048111 Lupinus albus
Lalb_Chr19g0132861 Lupinus albus
Lj2C825G1 Lonicera japonica
Lj3g0021581 Lotus japonicus
Lj5g0011508 Lotus japonicus
Lj9P648T51 Lonicera japonica
LjContig00430g0026017 Lotus japonicus
LjContig00564g0014208 Lotus japonicus
Lsat_1_v5_gn_3_117840 Lactuca sativa
Lsat_1_v5_gn_4_29881 Lactuca sativa
Manes.01G176600 Manihot esculenta
Manes.04G155300 Manihot esculenta
Manes.11G008800 Manihot esculenta
Mapoly0001s0028 Marchantia polymorpha
MBI13_g00894_MAGBIO Magnolia biondii
MBI13_g00896_MAGBIO Magnolia biondii
MBI19_g39605_MAGBIO Magnolia biondii
MCO09G782 Micromonas commoda
MD02G1273400 Malus domestica
MD07G1042300 Malus domestica
Medtr3g012030 Medicago truncatula
Medtr5g047770 Medicago truncatula
Medtr5g088760 Medicago truncatula
Medtr8g041420 Medicago truncatula
MELO3C011797.2 Cucumis melo
MELO3C014530.2 Cucumis melo
Migut.D00705 Erythranthe guttata
Migut.N01867 Erythranthe guttata
Migut.N02403 Erythranthe guttata
MSTRG.12423 Avicennia marina
MSTRG.16971 Avicennia marina
MSTRG.20493 Avicennia marina
MSTRG.5082 Avicennia marina
Nitab4.5_0002567g0120 Nicotiana tabacum
Nitab4.5_0004168g0030 Nicotiana tabacum
Nitab4.5_0007610g0050 Nicotiana tabacum
Nn2g14603 Nelumbo nucifera
Nn7g36989 Nelumbo nucifera
Oeu013061.1 Olea europaea
Oeu013062.1 Olea europaea
Oeu013452.1 Olea europaea
Os05g0494100 Oryza sativa ssp. japonica
Os11g0544700 Oryza sativa ssp. japonica
Peaxi162Scf00050g02112 Petunia axillaris
Peaxi162Scf00220g00230 Petunia axillaris
Peaxi162Scf00978g00427 Petunia axillaris
Peaxi162Scf47032g00004 Petunia axillaris
PGR031G2636 Punica granatum
PGR119G0475 Punica granatum
PGSC0003DMG400003296 Solanum tuberosum
PGSC0003DMG400027390 Solanum tuberosum
Phvul.005G014300 Phaseolus vulgaris
Phvul.008G204500 Phaseolus vulgaris
Phvul.011G196500 Phaseolus vulgaris
Potri.001G033200 Populus trichocarpa
Potri.001G225400 Populus trichocarpa
Potri.003G192100 Populus trichocarpa
Potri.009G022050 Populus trichocarpa
Pp3c3_34860 Physcomitrium patens
Pp3c4_6930 Physcomitrium patens
Pp3c8_1620 Physcomitrium patens
PRCOL_00001661 Prasinoderma coloniale
Prupe.2G047600 Prunus persica
Psat0s3383g0080 Pisum sativum
Psat4g189760 Pisum sativum
Psat5g224160 Pisum sativum
PSO384G2450 Papaver somniferum
PSO675G1019 Papaver somniferum
QL01p015995 Quercus lobata
QL04p021817 Quercus lobata
RcHm_v2.0_Chr1g0328631 Rosa chinensis
RcHm_v2.0_Chr1g0328761 Rosa chinensis
RcHm_v2.0_Chr1g0336861 Rosa chinensis
Rhsim07G0072000 Rhododendron simsii
Rhsim13G0202300 Rhododendron simsii
Sabra01G0023600 Salix brachista
Sabra03G0142900 Salix brachista
Sabra03G0143000 Salix brachista
Sabra09G0013900 Salix brachista
SalBow3G1159 Salvia bowleyana
SalBow5G4794 Salvia bowleyana
Sc06g0004810 Simmondsia chinensis
Sc10g0003170 Simmondsia chinensis
Sed0016042 Sechium edule
Sed0020453 Sechium edule
Sed0021748 Sechium edule
SEGI_16405 Sequoiadendron giganteum
SGA_v2.0_scaffold124G33592 Striga asiatica
SGA_v2.0_scaffold164G38144 Striga asiatica
SGA_v2.0_scaffold29G12136 Striga asiatica
SHI11355 Sapria himalayana
SMO358G0506 Selaginella moellendorffii
Solyc11g072150.3 Solanum lycopersicum
Sopen01g040420 Solanum pennellii
Sopen11g029800 Solanum pennellii
Sp3g10610 Schrenkiella parvula
Sp6g24910 Schrenkiella parvula
Sp6g35820 Schrenkiella parvula
TAR623G0883 Trochodendron aralioides
TAR633G1712 Trochodendron aralioides
TAR636G0226 Trochodendron aralioides
TAR636G2122 Trochodendron aralioides
THA.LOC104809911 Tarenaya hassleriana
THA.LOC104811212 Tarenaya hassleriana
THA.LOC104826742 Tarenaya hassleriana
Thecc.09G251300 Theobroma cacao
Thecc.10G138700 Theobroma cacao
Thhalv10014248m.g Eutrema salsugineum
Thhalv10014454m.g Eutrema salsugineum
Thhalv10021246m.g Eutrema salsugineum
TPR.G16359 Trifolium pratense
TPR.G16405 Trifolium pratense
TPR.G18450 Trifolium pratense
TPR.G2578 Trifolium pratense
TPR.G9952 Trifolium pratense
TWI15G0844 Tripterygium wilfordii
TWI31G1036 Tripterygium wilfordii
TWI63G0515 Tripterygium wilfordii
unitig_26.g9492 Utricularia gibba
unitig_749.g13553 Utricularia gibba
vmacro04096 Vaccinium macrocarpon
vmacro13785 Vaccinium macrocarpon
VMungo0647G2089 Vigna mungo
VMungo1080G1744 Vigna mungo
VMungo1127G1287 Vigna mungo
Zm00001eb113710 Zea mays
Zm00001eb197620 Zea mays
Zm00001eb291470 Zea mays

User provided reference genes

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