Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p32960 Brassica napus
A06p19400 Brassica napus
A06p27530 Brassica napus
A10p23090 Brassica napus
Aa31LG11G13630 Aethionema arabicum
Aa31LG4G16870 Aethionema arabicum
Aa31LG5G12980 Aethionema arabicum
Actinidia08034 Actinidia chinensis
Actinidia08966 Actinidia chinensis
Actinidia18103 Actinidia chinensis
Actinidia18104 Actinidia chinensis
Actinidia24599 Actinidia chinensis
Actinidia36290 Actinidia chinensis
Ah.10g038510 Amaranthus hybridus
Ah.11g051200 Amaranthus hybridus
AL2G24810 Arabidopsis lyrata
AL3G11810 Arabidopsis lyrata
AL5G27640 Arabidopsis lyrata
AL6G26850 Arabidopsis lyrata
AL7G45630 Arabidopsis lyrata
Aqoxy5G03599 Aquilegia oxysepala
Aqoxy5G03741 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.57MICD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.633QML Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CJQU22 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KZIE4J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M11NUP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N66XHA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QRUK19 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U08DU4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X4ZK77 Arachis hypogaea
AT3G02490 Arabidopsis thaliana
AT3G48250 Arabidopsis thaliana
AT5G15980 Arabidopsis thaliana
ATR0751G042 Amborella trichopoda
ATR0824G150 Amborella trichopoda
Atru.BG.194.p Acer truncatum
Atru.chr8.721 Acer truncatum
AUR62008141 Chenopodium quinoa
AUR62009436 Chenopodium quinoa
AUR62023116 Chenopodium quinoa
AUR62028723 Chenopodium quinoa
BcaB01g00827 Brassica carinata
BcaB02g10665 Brassica carinata
BcaB08g36875 Brassica carinata
BcaC01g02329 Brassica carinata
BcaC01g04443 Brassica carinata
BcaC01g04555 Brassica carinata
BcaC04g18918 Brassica carinata
BcaC07g39314 Brassica carinata
BolC3t16274H Brassica oleracea
BolC3t18924H Brassica oleracea
BolC8t49960H Brassica oleracea
BolC9t58952H Brassica oleracea
BraA03t12464Z Brassica rapa
BraA06t25020Z Brassica rapa
BraA06t25692Z Brassica rapa
BraA10t44377Z Brassica rapa
C03p40080 Brassica napus
C03p66540 Brassica napus
C08p23290 Brassica napus
C09p61090 Brassica napus
CAN.G1231.3 Capsicum annuum
CAN.G135.37 Capsicum annuum
CAN.G268.14 Capsicum annuum
CAN.G338.35 Capsicum annuum
CAN.G497.28 Capsicum annuum
CAN.G520.31 Capsicum annuum
CAN.G93.36 Capsicum annuum
CANSAT64G2241 Cannabis sativa
CANSAT80G0235 Cannabis sativa
CANSAT80G0911 Cannabis sativa
CARHR076470 Cardamine hirsuta
CARHR157010 Cardamine hirsuta
CARHR197330 Cardamine hirsuta
Carub.0003s0159 Capsella rubella
Carub.0005s1442 Capsella rubella
Carub.0006s1417 Capsella rubella
Ca_06715_v3 Cicer arietinum L.
Ca_14278_v3 Cicer arietinum L.
Ca_19417_v3 Cicer arietinum L.
Cc04_g11450 Coffea canephora
Cc04_g11460 Coffea canephora
Cc04_g11470 Coffea canephora
Cc07_g04780 Coffea canephora
CDE02G4655 Ceratophyllum demersum
CDE04G0475 Ceratophyllum demersum
CDE10G0256 Ceratophyllum demersum
Cfa007997 Carpinus fangiana
Cfa019223 Carpinus fangiana
Ciclev10011236m.g Citrus clementina
Ciclev10019266m.g Citrus clementina
CiPaw.03G007600 Carya illinoinensis
CiPaw.04G005600 Carya illinoinensis
CiPaw.11G019300 Carya illinoinensis
CiPaw.12G031300 Carya illinoinensis
ClCG06G017440 Citrullus lanatus
ClCG11G005110 Citrullus lanatus
COL.COLO4_11027 Corchorus olitorius
COL.COLO4_36756 Corchorus olitorius
Cpa.g.sc159.16 Carica papaya
Cpa.g.sc70.3 Carica papaya
CsaV3_1G001090 Cucumis sativus L.
CsaV3_5G038850 Cucumis sativus L.
CSS0007406 Camellia sinensis var. sinensis
CSS0010908 Camellia sinensis var. sinensis
CSS0020831 Camellia sinensis var. sinensis
DCAR_007533 Daucus carota
DCAR_021593 Daucus carota
Dinv20597 Davidia involucrata
Dinv33893 Davidia involucrata
Dinv34880 Davidia involucrata
Duzib068G1032 Durio zibethinus
Duzib187G0387 Durio zibethinus
Duzib264G0777 Durio zibethinus
ECA232G4177 Erigeron canadensis
ECA247G0350 Erigeron canadensis
EL10Ac2g04392 Beta vulgaris
EL10Ac5g10653 Beta vulgaris
Eucgr.J01442 Eucalyptus grandis
Eucgr.K02788 Eucalyptus grandis
FAN02G4324 Fragaria x ananassa
FAN04G0197 Fragaria x ananassa
FAN05G1792 Fragaria x ananassa
FAN08G0993 Fragaria x ananassa
FAN09G2362 Fragaria x ananassa
FAN10G2103 Fragaria x ananassa
FAN13G1072 Fragaria x ananassa
FAN14G1596 Fragaria x ananassa
FAN14G2554 Fragaria x ananassa
FAN14G4261 Fragaria x ananassa
FAN18G0198 Fragaria x ananassa
FvH4_5g06330 Fragaria vesca
FvH4_6g45820 Fragaria vesca
Glyma.08G255500 Glycine max
Glyma.17G084400 Glycine max
Glyma.17G124200 Glycine max
Glyma.17G124300 Glycine max
Glyma.18G278400 Glycine max
Gohir.A11G040200 Gossypium hirsutum
Gohir.A11G321400 Gossypium hirsutum
Gohir.D11G043400 Gossypium hirsutum
Gohir.D11G340500 Gossypium hirsutum
Gorai.007G046800 Gossypium raimondii
Gorai.007G370300 Gossypium raimondii
Gorai.007G370400 Gossypium raimondii
GSVIVG01036493001 Vitis vinifera
HanXRQChr02g0035821 Helianthus annuus
HanXRQChr09g0263281 Helianthus annuus
Haze_07591 Corylus avellana
Haze_14074 Corylus avellana
Hma1.2p1_1364F.1_g278370 Hydrangea macrophylla
HPP92_004605 Vanilla planifolia
Lalb_Chr07g0182981 Lupinus albus
Lalb_Chr17g0336691 Lupinus albus
Lj1g0004961 Lotus japonicus
Lj4g0001346 Lotus japonicus
Lj4g0007925 Lotus japonicus
Lj5P130T40 Lonicera japonica
Lju237C0G7 Lonicera japonica
Lsat_1_v5_gn_1_27740 Lactuca sativa
Lsat_1_v5_gn_4_175101 Lactuca sativa
Lsat_1_v5_gn_7_34421 Lactuca sativa
Manes.01G106400 Manihot esculenta
Manes.02G063016 Manihot esculenta
Manes.06G110600 Manihot esculenta
MBI07_g28242_MAGBIO Magnolia biondii
MBI09_g04150_MAGBIO Magnolia biondii
MBI15_g38536_MAGBIO Magnolia biondii
MBI16_g36318_MAGBIO Magnolia biondii
MD09G1079500 Malus domestica
MD14G1171100 Malus domestica
MD17G1069900 Malus domestica
Medtr0252s0060 Medicago truncatula
Medtr4g104790 Medicago truncatula
Medtr4g104800 Medicago truncatula
Medtr4g104830 Medicago truncatula
Medtr4g104840 Medicago truncatula
Medtr4g104860 Medicago truncatula
Medtr5g092040 Medicago truncatula
Medtr7g018240 Medicago truncatula
Medtr7g018270 Medicago truncatula
MELO3C022082.2 Cucumis melo
MELO3C026258.2 Cucumis melo
Migut.H00562 Erythranthe guttata
Migut.H00563 Erythranthe guttata
Migut.O00161 Erythranthe guttata
MSTRG.11497 Avicennia marina
MSTRG.2956 Avicennia marina
Nitab4.5_0001793g0050 Nicotiana tabacum
Nitab4.5_0001982g0040 Nicotiana tabacum
Nitab4.5_0009717g0030 Nicotiana tabacum
Nitab4.5_0010452g0040 Nicotiana tabacum
Nn1g07568 Nelumbo nucifera
Nn3g16689 Nelumbo nucifera
Oeu020152.1 Olea europaea
Oeu023453.1 Olea europaea
Oeu062889.1 Olea europaea
Os01g0970900 Oryza sativa ssp. japonica
Peaxi162Scf00020g00192 Petunia axillaris
Peaxi162Scf00089g01341 Petunia axillaris
PGR042G1318 Punica granatum
PGR044G2570 Punica granatum
PGSC0003DMG400010054 Solanum tuberosum
PGSC0003DMG400018187 Solanum tuberosum
Phvul.003G205300 Phaseolus vulgaris
Phvul.003G205400 Phaseolus vulgaris
Phvul.007G278400 Phaseolus vulgaris
Phvul.008G022600 Phaseolus vulgaris
Potri.004G108000 Populus trichocarpa
Potri.015G084800 Populus trichocarpa
Potri.017G108100 Populus trichocarpa
Prupe.3G244800 Prunus persica
Prupe.5G165200 Prunus persica
Psat3g192880 Pisum sativum
Psat4g060760 Pisum sativum
Psat4g060800 Pisum sativum
Psat4g181360 Pisum sativum
PSO063G1608 Papaver somniferum
QL10p006862 Quercus lobata
QL11p017890 Quercus lobata
RcHm_v2.0_Chr2g0164021 Rosa chinensis
RcHm_v2.0_Chr7g0192531 Rosa chinensis
Rhsim10G0061700 Rhododendron simsii
Rhsim10G0062200 Rhododendron simsii
Rhsim10G0062300 Rhododendron simsii
Rhsim10G0062400 Rhododendron simsii
Rhsim12G0168100 Rhododendron simsii
Sabra04G0074400 Salix brachista
Sabra15G0107800 Salix brachista
Sabra16G0031500 Salix brachista
Sabra17G0090700 Salix brachista
SalBow1G4744 Salvia bowleyana
SalBow1G8292 Salvia bowleyana
SalBow5G5090 Salvia bowleyana
SalBow5G5327 Salvia bowleyana
Sc04g0001490 Simmondsia chinensis
Sc10g0000410 Simmondsia chinensis
Sed0006469 Sechium edule
Sed0014518 Sechium edule
Sed0024220 Sechium edule
SEGI_04154 Sequoiadendron giganteum
SGA_v2.0_scaffold25G10796 Striga asiatica
SGA_v2.0_scaffold52G19036 Striga asiatica
SHI25538 Sapria himalayana
Solyc02g089560.4 Solanum lycopersicum
Solyc03g112190.4 Solanum lycopersicum
Sopen02g034290 Solanum pennellii
Sopen03g031280 Solanum pennellii
Sp3g01530 Schrenkiella parvula
Sp5g13780 Schrenkiella parvula
Sp6g28140 Schrenkiella parvula
TAR371G0019 Trochodendron aralioides
TAR629G2887 Trochodendron aralioides
TAR629G3196 Trochodendron aralioides
THA.LOC104798963 Tarenaya hassleriana
THA.LOC104821491 Tarenaya hassleriana
Thecc.01G111400 Theobroma cacao
Thecc.03G026200 Theobroma cacao
Thhalv10010209m.g Eutrema salsugineum
Thhalv10012887m.g Eutrema salsugineum
Thhalv10012992m.g Eutrema salsugineum
TPR.G3245 Trifolium pratense
TPR.G37490 Trifolium pratense
TPR.G37535 Trifolium pratense
TPR.G5043 Trifolium pratense
TPR.G9705 Trifolium pratense
TPR.G9717 Trifolium pratense
TWI23G0764 Tripterygium wilfordii
TWI60G1031 Tripterygium wilfordii
unitig_578.g16178 Utricularia gibba
VMungo1215G0531 Vigna mungo
VMungo1215G2415 Vigna mungo
VMungo1383G0633 Vigna mungo
Zm00001eb139890 Zea mays
Zm00001eb362270 Zea mays

User provided reference genes

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