Gene: AT3G48250

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G48250
  • Transcript Identifier AT3G48250.1
  • Gene Type Coding gene
  • Location Chr3 : 17870064-17871929 : negative

Gene Family Information

  • ID HOM05D002460
  • #Genes/#Species 276/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G48250.1
  • symbol BIR6
  • full_name Buthionine sulfoximine-insensitive roots 6
  • uniprot Q9STK5

Descriptions

  • Description Pentatricopeptide repeat (PPR) superfamily protein
  • Computational description Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02490.1); Has 21230 Blast hits to 7475 proteins in 220 species: Archae - 2; Bacteria - 3; Metazoa - 76; Fungi - 161; Plants - 20609; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
IMP
Gene OntologyRNA splicing1
GO:0008380
IEA
InterProRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IDA
ISM
Gene Ontologymitochondrion1
GO:0009507
IEA
GOA Databasechloroplast
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002885 Pentatricopeptide repeat
IPR044578 Pentatricopeptide repeat-containing protein BIR6-like
Mapman id Description
35.1 not assigned.annotated