Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p22110 Brassica napus
A07p43570 Brassica napus
A10p29850 Brassica napus
Aa31LG4G8280 Aethionema arabicum
Aa31sc167G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4987 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4998 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5001 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5005 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1680 Anthoceros agrestis
Actinidia10338 Actinidia chinensis
Actinidia10339 Actinidia chinensis
Actinidia30789 Actinidia chinensis
Ah.02g116080 Amaranthus hybridus
Ah.05g169750 Amaranthus hybridus
AL2G38630 Arabidopsis lyrata
AL6G16640 Arabidopsis lyrata
Aqoxy1G00581 Aquilegia oxysepala
Aqoxy6G00731 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3292NE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H9D2WH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V1YZ1K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y876JP Arachis hypogaea
AT1G78280 Arabidopsis thaliana
AT5G06550 Arabidopsis thaliana
ATR0361G001 Amborella trichopoda
ATR0697G006 Amborella trichopoda
ATR0782G122 Amborella trichopoda
Atru.chr13.1133 Acer truncatum
Atru.chr13.1134 Acer truncatum
Atru.chr8.1279 Acer truncatum
AUR62018953 Chenopodium quinoa
AUR62027799 Chenopodium quinoa
AUR62036308 Chenopodium quinoa
AUR62038417 Chenopodium quinoa
AUR62044676 Chenopodium quinoa
BcaB03g16003 Brassica carinata
BcaB05g25129 Brassica carinata
BcaC03g15804 Brassica carinata
BcaC06g32561 Brassica carinata
BcaC08g47405 Brassica carinata
BcaNung06692 Brassica carinata
BolC2t09567H Brassica oleracea
BolC2t09568H Brassica oleracea
BolC6t40246H Brassica oleracea
BolC9t59766H Brassica oleracea
BraA07t31869Z Brassica rapa
BraA10t45023Z Brassica rapa
C02p35500 Brassica napus
C06p52240 Brassica napus
C09p70220 Brassica napus
CAN.G128.166 Capsicum annuum
CAN.G128.168 Capsicum annuum
CAN.G970.12 Capsicum annuum
CANSAT54G2291 Cannabis sativa
CANSAT64G0706 Cannabis sativa
CARHR071750 Cardamine hirsuta
CARHR206650 Cardamine hirsuta
Carub.0002s2518 Capsella rubella
Carub.0006s0543 Capsella rubella
Ca_09083_v3 Cicer arietinum L.
Ca_16043_v3 Cicer arietinum L.
CBR_g29587 Chara braunii
Cc06_g06990 Coffea canephora
Cc10_g06810 Coffea canephora
CDE03G0287 Ceratophyllum demersum
CDE07G0411 Ceratophyllum demersum
Cfa013661 Carpinus fangiana
Cfa022487 Carpinus fangiana
Ciclev10000161m.g Citrus clementina
Ciclev10011486m.g Citrus clementina
CiPaw.07G177900 Carya illinoinensis
CiPaw.11G082000 Carya illinoinensis
ClCG08G011220 Citrullus lanatus
ClCG10G017940 Citrullus lanatus
COL.COLO4_12026 Corchorus olitorius
COL.COLO4_29483 Corchorus olitorius
Cpa.g.sc222.11 Carica papaya
Cpa.g.sc36.163 Carica papaya
Cpa.g.sc36.164 Carica papaya
Cpa.g.sc36.165 Carica papaya
Cre07.g327150 Chlamydomonas reinhardtii
Cre09.g400441 Chlamydomonas reinhardtii
Cre12.g485950 Chlamydomonas reinhardtii
CsaV3_2G029800 Cucumis sativus L.
CsaV3_3G038350 Cucumis sativus L.
CSS0003030 Camellia sinensis var. sinensis
CSS0024523 Camellia sinensis var. sinensis
CSS0042077 Camellia sinensis var. sinensis
DCAR_019216 Daucus carota
DCAR_020678 Daucus carota
Dinv11900 Davidia involucrata
Dinv19118 Davidia involucrata
Dinv44796 Davidia involucrata
Dinv44797 Davidia involucrata
Duzib106G1729 Durio zibethinus
Duzib128G0929 Durio zibethinus
ECA232G3235 Erigeron canadensis
ECA233G1363 Erigeron canadensis
EL10Ac1g01165 Beta vulgaris
EL10Ac5g11804 Beta vulgaris
Eucgr.A02541 Eucalyptus grandis
Eucgr.F00367 Eucalyptus grandis
FAN02G0971 Fragaria x ananassa
FAN04G0153 Fragaria x ananassa
FAN05G0800 Fragaria x ananassa
FAN05G1163 Fragaria x ananassa
FAN08G0375 Fragaria x ananassa
FAN13G1549 Fragaria x ananassa
FAN14G2045 Fragaria x ananassa
FAN18G1557 Fragaria x ananassa
FvH4_5g36800 Fragaria vesca
FvH4_6g21050 Fragaria vesca
Glyma.03G205202 Glycine max
Glyma.04G100002 Glycine max
Glyma.06G101600 Glycine max
Glyma.13G164200 Glycine max
Glyma.19G202600 Glycine max
Gohir.A01G132300 Gossypium hirsutum
Gohir.A04G056100 Gossypium hirsutum
Gohir.A05G224700 Gossypium hirsutum
Gohir.D01G115200 Gossypium hirsutum
Gohir.D04G093400 Gossypium hirsutum
Gohir.D05G227200 Gossypium hirsutum
Gorai.002G140900 Gossypium raimondii
Gorai.009G234900 Gossypium raimondii
Gorai.009G395600 Gossypium raimondii
GSVIVG01009071001 Vitis vinifera
GSVIVG01022515001 Vitis vinifera
HanXRQChr09g0250381 Helianthus annuus
HanXRQChr13g0398791 Helianthus annuus
HanXRQChr13g0412101 Helianthus annuus
Haze_20131 Corylus avellana
Haze_20133 Corylus avellana
Haze_22295 Corylus avellana
Haze_26852 Corylus avellana
Hma1.2p1_0127F.1_g059733 Hydrangea macrophylla
Hma1.2p1_0237F.1_g099640 Hydrangea macrophylla
HPP92_011039 Vanilla planifolia
HPP92_011163 Vanilla planifolia
HPP92_011193 Vanilla planifolia
HPP92_011199 Vanilla planifolia
HPP92_011200 Vanilla planifolia
Hund21514 Selenicereus undatus
Hund26976 Selenicereus undatus
Lalb_Chr11g0065321 Lupinus albus
Lalb_Chr25g0287831 Lupinus albus
Lj1C1061G4 Lonicera japonica
Lj1g0003374 Lotus japonicus
Lj1g0014547 Lotus japonicus
Lj4C97T15 Lonicera japonica
Lsat_1_v5_gn_2_121640 Lactuca sativa
Lsat_1_v5_gn_7_71901 Lactuca sativa
Lsat_1_v5_gn_9_72780 Lactuca sativa
Manes.08G037632 Manihot esculenta
Manes.18G065400 Manihot esculenta
Mapoly0027s0020 Marchantia polymorpha
Mapoly0061s0019 Marchantia polymorpha
MBI02_g27963_MAGBIO Magnolia biondii
MBI02_g33236_MAGBIO Magnolia biondii
MBI05_g40563_MAGBIO Magnolia biondii
MCO03G159 Micromonas commoda
MCO04G486 Micromonas commoda
MCO05G537 Micromonas commoda
MCO09G322 Micromonas commoda
MCO09G347 Micromonas commoda
MCO09G355 Micromonas commoda
MD08G1186800 Malus domestica
MD12G1046300 Malus domestica
MD15G1372700 Malus domestica
Medtr3g099370 Medicago truncatula
Medtr7g106970 Medicago truncatula
Medtr7g106990 Medicago truncatula
MELO3C009577.2 Cucumis melo
MELO3C011038.2 Cucumis melo
Migut.L01840 Erythranthe guttata
Migut.N02884 Erythranthe guttata
MSTRG.22163 Avicennia marina
MSTRG.26594 Avicennia marina
MSTRG.8520 Avicennia marina
Nitab4.5_0000721g0010 Nicotiana tabacum
Nitab4.5_0000786g0170 Nicotiana tabacum
Nitab4.5_0006196g0020 Nicotiana tabacum
Nitab4.5_0012842g0010 Nicotiana tabacum
Nn1g05429 Nelumbo nucifera
Nn2g14553 Nelumbo nucifera
Oeu054770.1 Olea europaea
Os03g0389900 Oryza sativa ssp. japonica
Os11g0572800 Oryza sativa ssp. japonica
Peaxi162Scf00030g01716 Petunia axillaris
Peaxi162Scf00203g00029 Petunia axillaris
PGR004G0672 Punica granatum
PGR042G2032 Punica granatum
PGSC0003DMG400028132 Solanum tuberosum
PGSC0003DMG400030813 Solanum tuberosum
Phvul.001G198700 Phaseolus vulgaris
Phvul.009G032400 Phaseolus vulgaris
Potri.002G099400 Populus trichocarpa
Potri.016G065400 Populus trichocarpa
Pp3c11_17580 Physcomitrium patens
Pp3c20_15460 Physcomitrium patens
Pp3c23_15970 Physcomitrium patens
Pp3c7_15150 Physcomitrium patens
PRCOL_00000421 Prasinoderma coloniale
PRCOL_00000836 Prasinoderma coloniale
PRCOL_00001542 Prasinoderma coloniale
PRCOL_00002305 Prasinoderma coloniale
PRCOL_00004110 Prasinoderma coloniale
PRCOL_00006314 Prasinoderma coloniale
Prupe.1G521300 Prunus persica
Prupe.7G089800 Prunus persica
Psat3g026960 Pisum sativum
Psat5g051160 Pisum sativum
PSO210G3704 Papaver somniferum
PSO339G5312 Papaver somniferum
PSO384G3383 Papaver somniferum
PSO447G0244 Papaver somniferum
QL07p026269 Quercus lobata
QL12p037399 Quercus lobata
QL12p038698 Quercus lobata
RcHm_v2.0_Chr2g0139391 Rosa chinensis
RcHm_v2.0_Chr3g0477431 Rosa chinensis
RcHm_v2.0_Chr7g0242931 Rosa chinensis
RcHm_v2.0_Chr7g0242951 Rosa chinensis
RcHm_v2.0_Chr7g0242991 Rosa chinensis
RcHm_v2.0_Chr7g0243001 Rosa chinensis
RcHm_v2.0_Chr7g0243011 Rosa chinensis
RcHm_v2.0_Chr7g0243141 Rosa chinensis
RcHm_v2.0_Chr7g0243151 Rosa chinensis
RcHm_v2.0_Chr7g0243161 Rosa chinensis
RcHm_v2.0_Chr7g0243351 Rosa chinensis
Rhsim05G0230700 Rhododendron simsii
Rhsim06G0078900 Rhododendron simsii
Sabra02G0078000 Salix brachista
Sabra16G0066900 Salix brachista
SalBow8G1618 Salvia bowleyana
Sc07g0006360 Simmondsia chinensis
Sc23g0000320 Simmondsia chinensis
Sed0004577 Sechium edule
Sed0005289 Sechium edule
SEGI_24064 Sequoiadendron giganteum
SGA_v2.0_scaffold184G40036 Striga asiatica
SGA_v2.0_scaffold28G11909 Striga asiatica
SGA_v2.0_scaffold84G26485 Striga asiatica
SMO351G0300 Selaginella moellendorffii
SMO361G0478 Selaginella moellendorffii
Solyc04g074490.3 Solanum lycopersicum
Solyc10g081630.2 Solanum lycopersicum
Sopen04g029500 Solanum pennellii
Sopen10g032140 Solanum pennellii
Sp5g33400 Schrenkiella parvula
Sp6g36310 Schrenkiella parvula
TAR369G1073 Trochodendron aralioides
TAR381G1131 Trochodendron aralioides
TAR381G1374 Trochodendron aralioides
TAR622G0887 Trochodendron aralioides
THA.LOC104799263 Tarenaya hassleriana
THA.LOC104810709 Tarenaya hassleriana
Thecc.05G183800 Theobroma cacao
Thecc.08G103800 Theobroma cacao
Thecc.09G097900 Theobroma cacao
Thhalv10013290m.g Eutrema salsugineum
Thhalv10018079m.g Eutrema salsugineum
TPR.G14216 Trifolium pratense
TPR.G20515 Trifolium pratense
TPR.G34450 Trifolium pratense
TWI12G1349 Tripterygium wilfordii
TWI74G1304 Tripterygium wilfordii
unitig_8.g3608 Utricularia gibba
unitig_8.g4735 Utricularia gibba
vmacro21245 Vaccinium macrocarpon
vmacro21299 Vaccinium macrocarpon
VMungo0251G2803 Vigna mungo
VMungo0331G0446 Vigna mungo
Zm00001eb018970 Zea mays
Zm00001eb200180 Zea mays

User provided reference genes

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