Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p01860 Brassica napus
A04p32020 Brassica napus
A05p04580 Brassica napus
A09p50800 Brassica napus
A09p52410 Brassica napus
Aa31LG10G12690 Aethionema arabicum
Aa31LG10G14270 Aethionema arabicum
Aa31LG1G25980 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_327.5 Anthoceros agrestis
Actinidia15857 Actinidia chinensis
Actinidia16286 Actinidia chinensis
Actinidia21575 Actinidia chinensis
Actinidia21577 Actinidia chinensis
Actinidia22027 Actinidia chinensis
Actinidia40435 Actinidia chinensis
Ah.06g193300 Amaranthus hybridus
Ah.13g075960 Amaranthus hybridus
AL4G43430 Arabidopsis lyrata
AL5G39630 Arabidopsis lyrata
AL5G42320 Arabidopsis lyrata
Aqoxy5G03994 Aquilegia oxysepala
Aqoxy5G04013 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.S1X8C1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T7BWXM Arachis hypogaea
AT2G42150 Arabidopsis thaliana
AT2G44430 Arabidopsis thaliana
AT3G57980 Arabidopsis thaliana
AT3G60110 Arabidopsis thaliana
ATR0605G035 Amborella trichopoda
ATR0605G388 Amborella trichopoda
ATR1096G077 Amborella trichopoda
Atru.chr11.2693 Acer truncatum
Atru.chr3.2428 Acer truncatum
Atru.chr8.1085 Acer truncatum
AUR62000050 Chenopodium quinoa
AUR62012043 Chenopodium quinoa
AUR62019222 Chenopodium quinoa
AUR62024311 Chenopodium quinoa
BcaB02g08192 Brassica carinata
BcaB02g08814 Brassica carinata
BcaB02g08816 Brassica carinata
BcaB02g08817 Brassica carinata
BcaB02g08818 Brassica carinata
BcaC02g07260 Brassica carinata
BcaC02g10112 Brassica carinata
BcaC02g12315 Brassica carinata
BcaC07g40168 Brassica carinata
BcaC07g40171 Brassica carinata
BcaC07g40172 Brassica carinata
BcaC07g40407 Brassica carinata
BcaC07g40528 Brassica carinata
BcaNung05748 Brassica carinata
BcaNung05750 Brassica carinata
BolC4t22171H Brassica oleracea
BolC4t24829H Brassica oleracea
BolC4t28452H Brassica oleracea
BolC8t50950H Brassica oleracea
BolC8t51110H Brassica oleracea
BraA04t15909Z Brassica rapa
BraA04t18659Z Brassica rapa
BraA05t19432Z Brassica rapa
BraA09t40527Z Brassica rapa
BraA09t40670Z Brassica rapa
C04p05310 Brassica napus
C04p32620 Brassica napus
C04p69540 Brassica napus
C08p33550 Brassica napus
C08p35150 Brassica napus
CAN.G261.18 Capsicum annuum
CANSAT54G1317 Cannabis sativa
CANSAT54G2004 Cannabis sativa
CARHR137220 Cardamine hirsuta
CARHR139590 Cardamine hirsuta
CARHR168290 Cardamine hirsuta
CARHR168300 Cardamine hirsuta
CARHR170420 Cardamine hirsuta
Carub.0004s2701 Capsella rubella
Carub.0005s2482 Capsella rubella
Carub.0005s2684 Capsella rubella
Ca_02930_v3 Cicer arietinum L.
CBR_g4894 Chara braunii
Cc02_g27100 Coffea canephora
Cc06_g16040 Coffea canephora
CDE04G3369 Ceratophyllum demersum
CDE07G0383 Ceratophyllum demersum
Cfa010715 Carpinus fangiana
Cfa020179 Carpinus fangiana
Ciclev10013312m.g Citrus clementina
Ciclev10014485m.g Citrus clementina
Ciclev10033813m.g Citrus clementina
CiPaw.13G001000 Carya illinoinensis
CiPaw.13G169400 Carya illinoinensis
ClCG02G023470 Citrullus lanatus
ClCG09G003810 Citrullus lanatus
COL.COLO4_07451 Corchorus olitorius
COL.COLO4_11265 Corchorus olitorius
Cpa.g.sc189.21 Carica papaya
Cpa.g.sc85.76 Carica papaya
CsaV3_4G024020 Cucumis sativus L.
CsaV3_7G031420 Cucumis sativus L.
CSS0029138 Camellia sinensis var. sinensis
CSS0038250 Camellia sinensis var. sinensis
CSS0047622 Camellia sinensis var. sinensis
DCAR_005088 Daucus carota
DCAR_017013 Daucus carota
DCAR_029605 Daucus carota
Dinv08062 Davidia involucrata
Dinv14285 Davidia involucrata
Dinv30724 Davidia involucrata
Dinv43488 Davidia involucrata
Dinv43929 Davidia involucrata
Duzib093G0996 Durio zibethinus
Duzib170G0686 Durio zibethinus
ECA232G2785 Erigeron canadensis
ECA246G0751 Erigeron canadensis
EL10Ac3g06928 Beta vulgaris
EL10Ac4g10325 Beta vulgaris
Eucgr.G03408 Eucalyptus grandis
FAN01G1711 Fragaria x ananassa
FAN01G2909 Fragaria x ananassa
FAN02G1644 Fragaria x ananassa
FAN03G0496 Fragaria x ananassa
FAN05G3754 Fragaria x ananassa
FAN05G4183 Fragaria x ananassa
FAN06G3402 Fragaria x ananassa
FAN09G0956 Fragaria x ananassa
FAN10G3462 Fragaria x ananassa
FAN11G0220 Fragaria x ananassa
FAN14G3792 Fragaria x ananassa
FAN14G5333 Fragaria x ananassa
FAN14G5503 Fragaria x ananassa
FAN16G3290 Fragaria x ananassa
FAN21G2033 Fragaria x ananassa
FAN25G1888 Fragaria x ananassa
FvH4_3g44130 Fragaria vesca
FvH4_6g22470 Fragaria vesca
FvH4_7g00180 Fragaria vesca
Glyma.08G149600 Glycine max
Glyma.15G269600 Glycine max
Gohir.A06G117800 Gossypium hirsutum
Gohir.A09G127600 Gossypium hirsutum
Gohir.A09G127700 Gossypium hirsutum
Gohir.D06G112100 Gossypium hirsutum
Gohir.D09G123700 Gossypium hirsutum
Gohir.D09G123800 Gossypium hirsutum
Gorai.006G142300 Gossypium raimondii
Gorai.006G142400 Gossypium raimondii
Gorai.010G127900 Gossypium raimondii
GSVIVG01001371001 Vitis vinifera
HanXRQChr01g0009591 Helianthus annuus
HanXRQChr13g0389351 Helianthus annuus
Haze_03264 Corylus avellana
Haze_19975 Corylus avellana
Haze_23026 Corylus avellana
Hma1.2p1_0005F.1_g004170 Hydrangea macrophylla
Hma1.2p1_0417F.1_g148900 Hydrangea macrophylla
HPP92_018954 Vanilla planifolia
HPP92_019678 Vanilla planifolia
Hund07555 Selenicereus undatus
Hund21658 Selenicereus undatus
Lalb_Chr25g0283511 Lupinus albus
Lj3g0024372 Lotus japonicus
Lj7A564T36 Lonicera japonica
Lju124A28T35 Lonicera japonica
Lsat_1_v5_gn_5_162941 Lactuca sativa
Lsat_1_v5_gn_9_26680 Lactuca sativa
Manes.06G169700 Manihot esculenta
Manes.10G150800 Manihot esculenta
Mapoly0032s0025 Marchantia polymorpha
MBI01_g01346_MAGBIO Magnolia biondii
MBI01_g33888_MAGBIO Magnolia biondii
MD02G1318400 Malus domestica
MD03G1017000 Malus domestica
MD07G1002900 Malus domestica
MD07G1247400 Malus domestica
MD11G1017600 Malus domestica
MD11G1018200 Malus domestica
MD12G1059100 Malus domestica
MD14G1058900 Malus domestica
Medtr2g060760 Medicago truncatula
MELO3C014621.2 Cucumis melo
MELO3C023515.2 Cucumis melo
Migut.K00040 Erythranthe guttata
MSTRG.10839 Avicennia marina
MSTRG.26087 Avicennia marina
Nitab4.5_0000324g0240 Nicotiana tabacum
Nitab4.5_0000892g0110 Nicotiana tabacum
Nitab4.5_0001146g0170 Nicotiana tabacum
Nitab4.5_0003792g0010 Nicotiana tabacum
Nn1g00445 Nelumbo nucifera
Nn2g15652 Nelumbo nucifera
Nn4g23030 Nelumbo nucifera
Nn4g23660 Nelumbo nucifera
Nn4g25676 Nelumbo nucifera
Nn5g27973 Nelumbo nucifera
Nn5g31045 Nelumbo nucifera
Nn7g36021 Nelumbo nucifera
Nn7g38304 Nelumbo nucifera
Nn8g39716 Nelumbo nucifera
Oeu029225.1 Olea europaea
Os08g0510700 Oryza sativa ssp. japonica
Os09g0491644 Oryza sativa ssp. japonica
Os09g0491660 Oryza sativa ssp. japonica
Peaxi162Scf00258g00314 Petunia axillaris
Peaxi162Scf00878g00327 Petunia axillaris
PGR031G2303 Punica granatum
PGSC0003DMG400006314 Solanum tuberosum
Phvul.005G039500 Phaseolus vulgaris
Potri.001G013600 Populus trichocarpa
Potri.001G229300 Populus trichocarpa
Potri.003G212500 Populus trichocarpa
Potri.009G023100 Populus trichocarpa
Potri.T042048 Populus trichocarpa
Prupe.2G004300 Prunus persica
Prupe.6G015400 Prunus persica
Prupe.7G075800 Prunus persica
Psat0s813g0040 Pisum sativum
PSO339G2748 Papaver somniferum
PSO339G4262 Papaver somniferum
PSO384G4020 Papaver somniferum
QL01p009136 Quercus lobata
QL04p000087 Quercus lobata
QL04p003134 Quercus lobata
QL07p023475 Quercus lobata
RcHm_v2.0_Chr1g0313431 Rosa chinensis
RcHm_v2.0_Chr3g0479881 Rosa chinensis
RcHm_v2.0_Chr5g0080461 Rosa chinensis
Rhsim01G0132800 Rhododendron simsii
Rhsim03G0007300 Rhododendron simsii
Rhsim05G0150900 Rhododendron simsii
Rhsim13G0226400 Rhododendron simsii
Sabra03G0155500 Salix brachista
Sabra03G0158700 Salix brachista
Sabra09G0014500 Salix brachista
Sabra16G0136800 Salix brachista
SalBow1G3943 Salvia bowleyana
Sc09g0000400 Simmondsia chinensis
Sed0005924 Sechium edule
Sed0006481 Sechium edule
Sed0025372 Sechium edule
SEGI_18002 Sequoiadendron giganteum
SGA_v2.0_scaffold274G46476 Striga asiatica
SGA_v2.0_scaffold94G28424 Striga asiatica
SHI30530 Sapria himalayana
Solyc01g073950.4 Solanum lycopersicum
Sopen01g033520 Solanum pennellii
Sp4g24350 Schrenkiella parvula
Sp4g26500 Schrenkiella parvula
Sp5g03100 Schrenkiella parvula
Sp5g04740 Schrenkiella parvula
TAR369G1008 Trochodendron aralioides
TAR369G1019 Trochodendron aralioides
TAR623G0010 Trochodendron aralioides
TAR633G0652 Trochodendron aralioides
THA.LOC104799085 Tarenaya hassleriana
THA.LOC104802495 Tarenaya hassleriana
THA.LOC104802516 Tarenaya hassleriana
THA.LOC104803086 Tarenaya hassleriana
THA.LOC104811121 Tarenaya hassleriana
THA.LOC104827578 Tarenaya hassleriana
Thecc.05G170300 Theobroma cacao
Thecc.09G219000 Theobroma cacao
Thhalv10001779m.g Eutrema salsugineum
Thhalv10005824m.g Eutrema salsugineum
Thhalv10005835m.g Eutrema salsugineum
TPR.G14356 Trifolium pratense
TWI34G0366 Tripterygium wilfordii
TWI53G1068 Tripterygium wilfordii
TWI73G0188 Tripterygium wilfordii
unitig_26.g8904 Utricularia gibba
unitig_26.g8905 Utricularia gibba
unitig_26.g8906 Utricularia gibba
unitig_736.g22299 Utricularia gibba
vmacro07925 Vaccinium macrocarpon
vmacro12584 Vaccinium macrocarpon
vmacro21159 Vaccinium macrocarpon
VMungo1080G1061 Vigna mungo
Zm00001eb035050 Zea mays
Zm00001eb316800 Zea mays

User provided reference genes

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