Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p04040 Brassica napus
A07p20130 Brassica napus
Aa31LG3G17890 Aethionema arabicum
Aa31LG9G1680 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3392 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.744 Anthoceros agrestis
Actinidia06079 Actinidia chinensis
Actinidia16534 Actinidia chinensis
Ah.06g191700 Amaranthus hybridus
Ah.12g065420 Amaranthus hybridus
AL6G19380 Arabidopsis lyrata
AL7G50230 Arabidopsis lyrata
Aqoxy3G03307 Aquilegia oxysepala
Aqoxy5G02414 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7V0FWY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.867A3R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.92987I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A2RU10 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GBNN5P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GNX9M7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZYPR1Z Arachis hypogaea
AT5G08650 Arabidopsis thaliana
AT5G39900 Arabidopsis thaliana
ATR0051G047 Amborella trichopoda
ATR0684G052 Amborella trichopoda
ATR0983G001 Amborella trichopoda
ATR1120G025 Amborella trichopoda
ATR1120G100 Amborella trichopoda
ATR1120G203 Amborella trichopoda
ATR1149G038 Amborella trichopoda
Atru.chr4.1181 Acer truncatum
Atru.chr8.2580 Acer truncatum
AUR62004792 Chenopodium quinoa
AUR62031626 Chenopodium quinoa
AUR62038862 Chenopodium quinoa
AUR62039045 Chenopodium quinoa
BcaB02g07962 Brassica carinata
BcaB05g21577 Brassica carinata
BcaB06g27396 Brassica carinata
BcaC03g13236 Brassica carinata
BcaC08g44436 Brassica carinata
BolC2t06327H Brassica oleracea
BolC3t12980H Brassica oleracea
BolC6t37084H Brassica oleracea
BraA02t04962Z Brassica rapa
BraA03t09747Z Brassica rapa
BraA07t29712Z Brassica rapa
C02p03680 Brassica napus
C06p18790 Brassica napus
C07p38360 Brassica napus
CAN.G34.2 Capsicum annuum
CAN.G34.3 Capsicum annuum
CAN.G676.46 Capsicum annuum
CANSAT54G0435 Cannabis sativa
CANSAT64G2777 Cannabis sativa
CARHR204330 Cardamine hirsuta
CARHR262280 Cardamine hirsuta
Carub.0006s0764 Capsella rubella
Carub.0007s3582 Capsella rubella
Ca_17016_v3 Cicer arietinum L.
CBR_g32286 Chara braunii
CBR_g41196 Chara braunii
Cc07_g03130 Coffea canephora
Cc07_g20230 Coffea canephora
Cc07_g20240 Coffea canephora
CDE02G4430 Ceratophyllum demersum
CDE04G1124 Ceratophyllum demersum
CDE08G1546 Ceratophyllum demersum
Cfa002224 Carpinus fangiana
Cfa007523 Carpinus fangiana
Cfa022627 Carpinus fangiana
Ciclev10011231m.g Citrus clementina
Ciclev10025061m.g Citrus clementina
CiPaw.03G254700 Carya illinoinensis
CiPaw.04G018900 Carya illinoinensis
ClCG04G003120 Citrullus lanatus
ClCG04G003150 Citrullus lanatus
ClCG04G003160 Citrullus lanatus
ClCG09G018370 Citrullus lanatus
COL.COLO4_07358 Corchorus olitorius
COL.COLO4_08184 Corchorus olitorius
Cpa.g.sc14.31 Carica papaya
Cpa.g.sc37.73 Carica papaya
Cpa.g.sc37.74 Carica papaya
Cre03.g165000 Chlamydomonas reinhardtii
Cre03.g174000 Chlamydomonas reinhardtii
CsaV3_4G029800 Cucumis sativus L.
CsaV3_5G037910 Cucumis sativus L.
CSS0009385 Camellia sinensis var. sinensis
CSS0010809 Camellia sinensis var. sinensis
CSS0011297 Camellia sinensis var. sinensis
CSS0016657 Camellia sinensis var. sinensis
CSS0017414 Camellia sinensis var. sinensis
CSS0023675 Camellia sinensis var. sinensis
CSS0023790 Camellia sinensis var. sinensis
CSS0030382 Camellia sinensis var. sinensis
CSS0047928 Camellia sinensis var. sinensis
DCAR_011150 Daucus carota
DCAR_012727 Daucus carota
Dinv05907 Davidia involucrata
Dinv33734 Davidia involucrata
Duzib147G0870 Durio zibethinus
Duzib147G1704 Durio zibethinus
ECA232G2441 Erigeron canadensis
ECA248G0559 Erigeron canadensis
EL10Ac2g02947 Beta vulgaris
EL10Ac4g08949 Beta vulgaris
EL10Ac4g08950 Beta vulgaris
Eucgr.J01223 Eucalyptus grandis
Eucgr.L00739 Eucalyptus grandis
FAN05G5119 Fragaria x ananassa
FAN09G1930 Fragaria x ananassa
FAN09G4543 Fragaria x ananassa
FAN23G1260 Fragaria x ananassa
FAN23G1666 Fragaria x ananassa
FAN28G1337 Fragaria x ananassa
FvH4_1g11350 Fragaria vesca
FvH4_4g12911 Fragaria vesca
FvH4_6g49130 Fragaria vesca
Glyma.04G168701 Glycine max
Glyma.04G168800 Glycine max
Glyma.04G206300 Glycine max
Glyma.06G159400 Glycine max
Glyma.09G258100 Glycine max
Glyma.18G234533 Glycine max
Gohir.A05G375700 Gossypium hirsutum
Gohir.A09G022600 Gossypium hirsutum
Gohir.D04G040100 Gossypium hirsutum
Gohir.D09G021900 Gossypium hirsutum
Gorai.006G025800 Gossypium raimondii
Gorai.012G045200 Gossypium raimondii
GSVIVG01011357001 Vitis vinifera
GSVIVG01022409001 Vitis vinifera
HanXRQChr09g0265491 Helianthus annuus
HanXRQChr11g0343541 Helianthus annuus
Haze_14565 Corylus avellana
Haze_25401 Corylus avellana
Haze_26552 Corylus avellana
Hma1.2p1_0627F.1_g191660 Hydrangea macrophylla
Hma1.2p1_0627F.1_g191670 Hydrangea macrophylla
HPP92_000632 Vanilla planifolia
HPP92_024255 Vanilla planifolia
HPP92_024266 Vanilla planifolia
Hund06882 Selenicereus undatus
Hund06883 Selenicereus undatus
Hund15628 Selenicereus undatus
Lalb_Chr08g0237811 Lupinus albus
Lalb_Chr10g0093461 Lupinus albus
Lj1g0012635 Lotus japonicus
Lj1g0013321 Lotus japonicus
Lj4A817G44 Lonicera japonica
Lj4A817T44 Lonicera japonica
Lj4C817T5 Lonicera japonica
Lj7A399T57 Lonicera japonica
Lsat_1_v5_gn_1_80721 Lactuca sativa
Lsat_1_v5_gn_4_177001 Lactuca sativa
Manes.13G077445 Manihot esculenta
Manes.13G078601 Manihot esculenta
Manes.17G023200 Manihot esculenta
Mapoly0004s0135 Marchantia polymorpha
Mapoly0018s0022 Marchantia polymorpha
Mapoly0067s0096 Marchantia polymorpha
MBI03_g11148_MAGBIO Magnolia biondii
MBI03_g40054_MAGBIO Magnolia biondii
MBI04_g05744_MAGBIO Magnolia biondii
MCO13G039 Micromonas commoda
MCO14G556 Micromonas commoda
MD02G1127200 Malus domestica
MD09G1048400 Malus domestica
MD17G1048500 Malus domestica
Medtr2g438030 Medicago truncatula
Medtr3g097250 Medicago truncatula
Medtr7g009740 Medicago truncatula
MELO3C003261.2 Cucumis melo
MELO3C021977.2 Cucumis melo
Migut.H00899 Erythranthe guttata
Migut.K01328 Erythranthe guttata
Migut.L00555 Erythranthe guttata
Migut.L00580 Erythranthe guttata
MSTRG.15260 Avicennia marina
MSTRG.23955 Avicennia marina
Nitab4.5_0000002g0410 Nicotiana tabacum
Nitab4.5_0000147g0070 Nicotiana tabacum
Nitab4.5_0001663g0160 Nicotiana tabacum
Nitab4.5_0008519g0020 Nicotiana tabacum
Nn1g08924 Nelumbo nucifera
Nn4g22868 Nelumbo nucifera
Nn4g23073 Nelumbo nucifera
Oeu011019.1 Olea europaea
Oeu062081.1 Olea europaea
Os06g0144800 Oryza sativa ssp. japonica
Peaxi162Scf00451g00937 Petunia axillaris
Peaxi162Scf01286g00123 Petunia axillaris
PGR083G2781 Punica granatum
PGR102G2135 Punica granatum
PGSC0003DMG400013207 Solanum tuberosum
PGSC0003DMG400027268 Solanum tuberosum
Phvul.008G061200 Phaseolus vulgaris
Phvul.009G157100 Phaseolus vulgaris
Potri.001G305300 Populus trichocarpa
Potri.017G079800 Populus trichocarpa
Pp3c1_4340 Physcomitrium patens
Pp3c26_13410 Physcomitrium patens
Pp3c2_35906 Physcomitrium patens
PRCOL_00004188 Prasinoderma coloniale
Prupe.3G270700 Prunus persica
Prupe.7G172400 Prunus persica
Psat3g196200 Pisum sativum
Psat5g057760 Pisum sativum
Psat5g057800 Pisum sativum
PSO017G6250 Papaver somniferum
PSO170G1031 Papaver somniferum
PSO591G0368 Papaver somniferum
PSO832G3780 Papaver somniferum
QL02p080902 Quercus lobata
QL10p040252 Quercus lobata
QL10p040373 Quercus lobata
RcHm_v2.0_Chr2g0098891 Rosa chinensis
RcHm_v2.0_Chr2g0169001 Rosa chinensis
Rhsim03G0269400 Rhododendron simsii
Rhsim08G0000900 Rhododendron simsii
RhsimUnG0056000 Rhododendron simsii
RhsimUnG0056200 Rhododendron simsii
RhsimUnG0199500 Rhododendron simsii
Sabra16G0191600 Salix brachista
Sabra17G0071400 Salix brachista
SalBow1G5571 Salvia bowleyana
SalBow5G1238 Salvia bowleyana
Sc09g0004380 Simmondsia chinensis
Sc14g0006010 Simmondsia chinensis
Sed0006106 Sechium edule
Sed0011884 Sechium edule
SEGI_02710 Sequoiadendron giganteum
SEGI_04722 Sequoiadendron giganteum
SEGI_07522 Sequoiadendron giganteum
SEGI_11485 Sequoiadendron giganteum
SEGI_15043 Sequoiadendron giganteum
SEGI_20932 Sequoiadendron giganteum
SEGI_24970 Sequoiadendron giganteum
SEGI_29777 Sequoiadendron giganteum
SEGI_34321 Sequoiadendron giganteum
SGA_v2.0_scaffold205G41766 Striga asiatica
SGA_v2.0_scaffold236G43780 Striga asiatica
SGA_v2.0_scaffold30G12357 Striga asiatica
SGA_v2.0_scaffold30G12363 Striga asiatica
SHI22248 Sapria himalayana
SHI36223 Sapria himalayana
SMO040G0002 Selaginella moellendorffii
SMO167G0017 Selaginella moellendorffii
SMO347G0398 Selaginella moellendorffii
SMO356G0079 Selaginella moellendorffii
Solyc03g058880.4 Solanum lycopersicum
Solyc04g015450.3 Solanum lycopersicum
Sopen03g012730 Solanum pennellii
Sopen04g007500 Solanum pennellii
Sp6g34210 Schrenkiella parvula
Sp7g02140 Schrenkiella parvula
TAR381G0395 Trochodendron aralioides
TAR381G1078 Trochodendron aralioides
TAR622G1056 Trochodendron aralioides
THA.LOC104805446 Tarenaya hassleriana
THA.LOC104818410 Tarenaya hassleriana
Thecc.01G238700 Theobroma cacao
Thecc.04G076800 Theobroma cacao
Thhalv10012870m.g Eutrema salsugineum
Thhalv10027676m.g Eutrema salsugineum
TPR.G28700 Trifolium pratense
TPR.G35586 Trifolium pratense
TPR.G4284 Trifolium pratense
TWI31G0626 Tripterygium wilfordii
TWI32G1331 Tripterygium wilfordii
TWI79G1125 Tripterygium wilfordii
unitig_37.g12358 Utricularia gibba
unitig_899.g15509 Utricularia gibba
vmacro05727 Vaccinium macrocarpon
vmacro18681 Vaccinium macrocarpon
VMungo1309G0797 Vigna mungo
Zm00001eb207820 Zea mays
Zm00001eb377210 Zea mays

User provided reference genes

Program Settings