Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p32710 Brassica napus
A03p42740 Brassica napus
A04p00230 Brassica napus
A05p26430 Brassica napus
Aa31LG10G17010 Aethionema arabicum
Aa31LG8G8910 Aethionema arabicum
Actinidia08503 Actinidia chinensis
Actinidia23483 Actinidia chinensis
Actinidia36974 Actinidia chinensis
Actinidia36975 Actinidia chinensis
Actinidia36976 Actinidia chinensis
Actinidia36977 Actinidia chinensis
Actinidia36978 Actinidia chinensis
Actinidia40179 Actinidia chinensis
Actinidia40180 Actinidia chinensis
Ah.13g073850 Amaranthus hybridus
Ah.13g073860 Amaranthus hybridus
Ah.13g073870 Amaranthus hybridus
AL3G36660 Arabidopsis lyrata
AL5G46020 Arabidopsis lyrata
AL7G40870 Arabidopsis lyrata
Aqoxy2G03363 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5R3DYZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C339P9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DHG9YX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GGU5D9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q6BK6L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZKNE4R Arachis hypogaea
AT3G22380 Arabidopsis thaliana
AT3G63180 Arabidopsis thaliana
ATR0332G080 Amborella trichopoda
ATR0743G011 Amborella trichopoda
Atru.chr4.2501 Acer truncatum
Atru.chr4.2502 Acer truncatum
Atru.chr5.1448 Acer truncatum
AUR62038105 Chenopodium quinoa
AUR62038630 Chenopodium quinoa
BcaB04g19200 Brassica carinata
BcaB04g20522 Brassica carinata
BcaB06g26339 Brassica carinata
BcaC01g03446 Brassica carinata
BcaC02g10349 Brassica carinata
BcaC05g28079 Brassica carinata
BcaC09g49170 Brassica carinata
BolC1t04147H Brassica oleracea
BolC3t17519H Brassica oleracea
BolC4t24537H Brassica oleracea
BolC5t32844H Brassica oleracea
BraA01t03399Z Brassica rapa
BraA03t13421Z Brassica rapa
BraA04t15742Z Brassica rapa
BraA05t21516Z Brassica rapa
C01p41910 Brassica napus
C03p52490 Brassica napus
C04p30050 Brassica napus
C05p41010 Brassica napus
CAN.G907.19 Capsicum annuum
CARHR098270 Cardamine hirsuta
CARHR173500 Cardamine hirsuta
Carub.0003s2254 Capsella rubella
Carub.0005s2985 Capsella rubella
Carub.0007s2714 Capsella rubella
Ca_09753_v3 Cicer arietinum L.
Ca_10916_v3 Cicer arietinum L.
Cc03_g03560 Coffea canephora
CDE08G0117 Ceratophyllum demersum
CDE10G0467 Ceratophyllum demersum
CDE10G0571 Ceratophyllum demersum
Cfa006148 Carpinus fangiana
Cfa006694 Carpinus fangiana
Cfa017748 Carpinus fangiana
Ciclev10004136m.g Citrus clementina
Ciclev10018523m.g Citrus clementina
CiPaw.01G164400 Carya illinoinensis
CiPaw.02G096000 Carya illinoinensis
CiPaw.08G109100 Carya illinoinensis
ClCG06G006080 Citrullus lanatus
ClCG09G007080 Citrullus lanatus
COL.COLO4_09085 Corchorus olitorius
COL.COLO4_10231 Corchorus olitorius
Cpa.g.sc52.41 Carica papaya
Cpa.g.sc58.130 Carica papaya
CsaV3_6G038190 Cucumis sativus L.
CsaV3_7G028090 Cucumis sativus L.
CSS0005054 Camellia sinensis var. sinensis
DCAR_027191 Daucus carota
DCAR_027192 Daucus carota
Dinv38434 Davidia involucrata
Dinv44512 Davidia involucrata
Duzib052G1002 Durio zibethinus
Duzib133G0624 Durio zibethinus
Duzib138G1894 Durio zibethinus
Duzib151G0448 Durio zibethinus
Duzib177G0858 Durio zibethinus
Duzib211G0657 Durio zibethinus
Duzib212G0865 Durio zibethinus
ECA234G2398 Erigeron canadensis
Eucgr.H03537 Eucalyptus grandis
FAN07G2387 Fragaria x ananassa
FAN12G3852 Fragaria x ananassa
FAN15G0058 Fragaria x ananassa
FAN17G1063 Fragaria x ananassa
FAN20G2514 Fragaria x ananassa
FAN22G1385 Fragaria x ananassa
FAN24G1830 Fragaria x ananassa
FAN27G3032 Fragaria x ananassa
FvH4_2g23490 Fragaria vesca
FvH4_4g15230 Fragaria vesca
Glyma.02G146900 Glycine max
Glyma.06G095800 Glycine max
Glyma.10G027000 Glycine max
Glyma.10G249300 Glycine max
Glyma.17G162500 Glycine max
Glyma.20G144400 Glycine max
Gohir.A09G214700 Gossypium hirsutum
Gohir.A10G117100 Gossypium hirsutum
Gohir.A12G004700 Gossypium hirsutum
Gohir.A12G004800 Gossypium hirsutum
Gohir.D09G217200 Gossypium hirsutum
Gohir.D10G151700 Gossypium hirsutum
Gohir.D12G004400 Gossypium hirsutum
Gorai.006G237700 Gossypium raimondii
Gorai.008G004200 Gossypium raimondii
Gorai.011G169000 Gossypium raimondii
GSVIVG01001149001 Vitis vinifera
GSVIVG01017938001 Vitis vinifera
HanXRQChr04g0111791 Helianthus annuus
HanXRQChr04g0111801 Helianthus annuus
HanXRQChr09g0263401 Helianthus annuus
Haze_00920 Corylus avellana
Haze_04701 Corylus avellana
Haze_09582 Corylus avellana
Hma1.2p1_3606F.1_g337000 Hydrangea macrophylla
HPP92_006103 Vanilla planifolia
HPP92_024373 Vanilla planifolia
HPP92_024374 Vanilla planifolia
HPP92_024375 Vanilla planifolia
HPP92_024376 Vanilla planifolia
HPP92_024476 Vanilla planifolia
HPP92_024870 Vanilla planifolia
HPP92_027911 Vanilla planifolia
HPP92_027912 Vanilla planifolia
Hund12142 Selenicereus undatus
Lalb_Chr02g0142731 Lupinus albus
Lalb_Chr05g0210931 Lupinus albus
Lalb_Chr09g0319791 Lupinus albus
Lj1g0011785 Lotus japonicus
Lj5g0016334 Lotus japonicus
Lj5g0016690 Lotus japonicus
Lj6A599G41 Lonicera japonica
Lj6C594G25 Lonicera japonica
Lj6C599T3 Lonicera japonica
Lsat_1_v5_gn_5_148881 Lactuca sativa
Manes.15G026500 Manihot esculenta
Manes.15G027400 Manihot esculenta
MBI04_g44890_MAGBIO Magnolia biondii
MBI06_g41726_MAGBIO Magnolia biondii
MBI15_g05486_MAGBIO Magnolia biondii
MD03G1263800 Malus domestica
MD11G1284500 Malus domestica
MD13G1190800 Malus domestica
MD16G1127600 Malus domestica
MD16G1191200 Malus domestica
Medtr1g072160 Medicago truncatula
Medtr1g104710 Medicago truncatula
Medtr8g031380 Medicago truncatula
MELO3C014484.2 Cucumis melo
MELO3C015830.2 Cucumis melo
Migut.D00304 Erythranthe guttata
Migut.G00324 Erythranthe guttata
Migut.N00175 Erythranthe guttata
MSTRG.18236 Avicennia marina
MSTRG.21555 Avicennia marina
MSTRG.21848 Avicennia marina
MSTRG.24745 Avicennia marina
MSTRG.4019 Avicennia marina
Nitab4.5_0000795g0080 Nicotiana tabacum
Nitab4.5_0007048g0010 Nicotiana tabacum
Nn1g00911 Nelumbo nucifera
Nn1g01515 Nelumbo nucifera
Nn1g01516 Nelumbo nucifera
Nn1g02265 Nelumbo nucifera
Nn2g10699 Nelumbo nucifera
Nn4g22442 Nelumbo nucifera
Nn4g25030 Nelumbo nucifera
Nn4g26275 Nelumbo nucifera
Nn8g38749 Nelumbo nucifera
Oeu025732.3 Olea europaea
Oeu034964.1 Olea europaea
Oeu041218.1 Olea europaea
Os07g0571100 Oryza sativa ssp. japonica
Peaxi162Scf00437g00026 Petunia axillaris
PGR004G2462 Punica granatum
PGSC0003DMG400031808 Solanum tuberosum
Phvul.001G151600 Phaseolus vulgaris
Phvul.007G055400 Phaseolus vulgaris
Phvul.007G172500 Phaseolus vulgaris
Potri.002G052300 Populus trichocarpa
Potri.003G029500 Populus trichocarpa
Potri.005G210200 Populus trichocarpa
Potri.008G151200 Populus trichocarpa
Potri.010G089700 Populus trichocarpa
Prupe.1G011200 Prunus persica
Prupe.8G240200 Prunus persica
Psat2g052280 Pisum sativum
Psat3g032520 Pisum sativum
Psat5g269680 Pisum sativum
Psat6g060680 Pisum sativum
Psat6g208200 Pisum sativum
Psat7g167360 Pisum sativum
Psat7g167400 Pisum sativum
PSO210G7189 Papaver somniferum
PSO832G2586 Papaver somniferum
QL06p003139 Quercus lobata
QL07p041700 Quercus lobata
QL12p021604 Quercus lobata
RcHm_v2.0_Chr4g0416621 Rosa chinensis
RcHm_v2.0_Chr6g0290961 Rosa chinensis
Rhsim02G0022900 Rhododendron simsii
Sabra02G0042400 Salix brachista
Sabra03G0158500 Salix brachista
Sabra05G0160300 Salix brachista
Sabra08G0115000 Salix brachista
Sabra10G0053600 Salix brachista
SalBow2G0563 Salvia bowleyana
SalBow4G0092 Salvia bowleyana
SalBow4G2733 Salvia bowleyana
Sc13g0004300 Simmondsia chinensis
Sc25g0004400 Simmondsia chinensis
Sed0008106 Sechium edule
Sed0012197 Sechium edule
Sed0021914 Sechium edule
SEGI_33118 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05098 Striga asiatica
SGA_v2.0_scaffold138G35334 Striga asiatica
SGA_v2.0_scaffold191G40497 Striga asiatica
SGA_v2.0_scaffold1G00485 Striga asiatica
SGA_v2.0_scaffold257G45729 Striga asiatica
SGA_v2.0_scaffold39G15271 Striga asiatica
SGA_v2.0_scaffold96G29024 Striga asiatica
SHI00424 Sapria himalayana
Solyc09g075830.3 Solanum lycopersicum
Sopen09g030650 Solanum pennellii
Sp3g20150 Schrenkiella parvula
Sp5g00350 Schrenkiella parvula
TAR362G1005 Trochodendron aralioides
TAR365G0329 Trochodendron aralioides
TAR365G0729 Trochodendron aralioides
TAR365G0901 Trochodendron aralioides
TAR633G0416 Trochodendron aralioides
TAR633G1175 Trochodendron aralioides
TAR636G3152 Trochodendron aralioides
THA.LOC104802231 Tarenaya hassleriana
THA.LOC104803022 Tarenaya hassleriana
THA.LOC104805011 Tarenaya hassleriana
THA.LOC104808535 Tarenaya hassleriana
THA.LOC104822274 Tarenaya hassleriana
Thecc.01G277700 Theobroma cacao
Thecc.04G228600 Theobroma cacao
Thhalv10005768m.g Eutrema salsugineum
Thhalv10019888m.g Eutrema salsugineum
TPR.G10866 Trifolium pratense
TPR.G40647 Trifolium pratense
TPR.G5532 Trifolium pratense
TPR.G9122 Trifolium pratense
TWI09G0219 Tripterygium wilfordii
TWI53G2093 Tripterygium wilfordii
TWI73G0052 Tripterygium wilfordii
unitig_32.g10810 Utricularia gibba
unitig_32.g10811 Utricularia gibba
unitig_748.g8339 Utricularia gibba
unitig_748.g8544 Utricularia gibba
unitig_8.g3722 Utricularia gibba
vmacro15329 Vaccinium macrocarpon
VMungo0720G1158 Vigna mungo
VMungo0720G2301 Vigna mungo
VMungo1383G3670 Vigna mungo
Zm00001eb056670 Zea mays
Zm00001eb107250 Zea mays
Zm00001eb120290 Zea mays
Zm00001eb324930 Zea mays

User provided reference genes

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