Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p15830 Brassica napus
Aa31LG5G6890 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.185 Anthoceros agrestis
Actinidia29670 Actinidia chinensis
Actinidia33951 Actinidia chinensis
Actinidia34442 Actinidia chinensis
Ah.08g220430 Amaranthus hybridus
Ah.10g036710 Amaranthus hybridus
Ah.14g082670 Amaranthus hybridus
AL1G17520 Arabidopsis lyrata
AL2G30730 Arabidopsis lyrata
AL4G24280 Arabidopsis lyrata
AL4G24290 Arabidopsis lyrata
AL4G32460 Arabidopsis lyrata
Aqoxy1G00741 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.03KRNB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2VD0DE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6QL4ST Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7KT8N3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C93DVI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L4PA5N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PUR3G8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U7GG8I Arachis hypogaea
AT1G07370 Arabidopsis thaliana
AT2G29570 Arabidopsis thaliana
ATR0618G446 Amborella trichopoda
ATR0680G321 Amborella trichopoda
Atru.chr3.4053 Acer truncatum
AUR62001707 Chenopodium quinoa
AUR62012192 Chenopodium quinoa
AUR62020074 Chenopodium quinoa
AUR62022826 Chenopodium quinoa
BcaB02g10263 Brassica carinata
BcaB05g22504 Brassica carinata
BcaC07g42007 Brassica carinata
BcaC07g42462 Brassica carinata
BolC4t23656H Brassica oleracea
BolC8t47099H Brassica oleracea
BolC8t52592H Brassica oleracea
BraA05t20496Z Brassica rapa
BraA09t41985Z Brassica rapa
C04p21270 Brassica napus
C05p05420 Brassica napus
C08p02990 Brassica napus
C08p50640 Brassica napus
CAN.G394.99 Capsicum annuum
CANSAT54G2750 Cannabis sativa
CANSAT78G2202 Cannabis sativa
CANSAT78G2483 Cannabis sativa
CARHR007080 Cardamine hirsuta
CARHR122910 Cardamine hirsuta
Carub.0001s0667 Capsella rubella
Carub.0004s1062 Capsella rubella
Carub.0004s1063 Capsella rubella
Ca_14888_v3 Cicer arietinum L.
CBR_g8027 Chara braunii
Cc01_g09170 Coffea canephora
Cc01_g13700 Coffea canephora
Cc01_g19170 Coffea canephora
Cc02_g02530 Coffea canephora
Cc02_g07010 Coffea canephora
CDE02G0969 Ceratophyllum demersum
CDE09G0989 Ceratophyllum demersum
Cfa011630 Carpinus fangiana
Ciclev10029070m.g Citrus clementina
Ciclev10030011m.g Citrus clementina
CiPaw.01G294900 Carya illinoinensis
CiPaw.13G083600 Carya illinoinensis
CiPaw.14G062600 Carya illinoinensis
CiPaw.15G124600 Carya illinoinensis
ClCG02G019790 Citrullus lanatus
ClCG07G003870 Citrullus lanatus
COL.COLO4_19083 Corchorus olitorius
Cpa.g.sc112.81 Carica papaya
Cre12.g515850 Chlamydomonas reinhardtii
CsaV3_5G008820 Cucumis sativus L.
CsaV3_6G016510 Cucumis sativus L.
CSS0001422 Camellia sinensis var. sinensis
CSS0025335 Camellia sinensis var. sinensis
CSS0029507 Camellia sinensis var. sinensis
DCAR_007406 Daucus carota
DCAR_011777 Daucus carota
Dinv14480 Davidia involucrata
Dinv28595 Davidia involucrata
Dinv29454 Davidia involucrata
Dinv32451 Davidia involucrata
Dinv32452 Davidia involucrata
Dinv32454 Davidia involucrata
Dinv34434 Davidia involucrata
Duzib114G1052 Durio zibethinus
Duzib150G0009 Durio zibethinus
Duzib170G0557 Durio zibethinus
ECA233G2070 Erigeron canadensis
ECA248G2035 Erigeron canadensis
EL10Ac1g00531 Beta vulgaris
EL10Ac2g04771 Beta vulgaris
EL10Ac5g10804 Beta vulgaris
EL10Ac5g10992 Beta vulgaris
EL10Ac7g16103 Beta vulgaris
Eucgr.J01951 Eucalyptus grandis
FAN03G0088 Fragaria x ananassa
FAN03G3437 Fragaria x ananassa
FAN05G4258 Fragaria x ananassa
FAN06G0269 Fragaria x ananassa
FAN11G3986 Fragaria x ananassa
FAN12G0397 Fragaria x ananassa
FAN14G3520 Fragaria x ananassa
FAN16G1397 Fragaria x ananassa
FAN17G2398 Fragaria x ananassa
FAN21G0265 Fragaria x ananassa
FAN22G0348 Fragaria x ananassa
FAN25G0398 Fragaria x ananassa
FvH4_3g37710 Fragaria vesca
FvH4_4g13930 Fragaria vesca
FvH4_6g24870 Fragaria vesca
FvH4_7g20850 Fragaria vesca
Glyma.02G304300 Glycine max
Glyma.08G334900 Glycine max
Glyma.14G009500 Glycine max
Glyma.18G067800 Glycine max
Gohir.A03G048100 Gossypium hirsutum
Gohir.A13G225400 Gossypium hirsutum
Gohir.D03G118900 Gossypium hirsutum
Gohir.D13G230500 Gossypium hirsutum
Gorai.003G125300 Gossypium raimondii
Gorai.012G075000 Gossypium raimondii
Gorai.013G261100 Gossypium raimondii
GSVIVG01024814001 Vitis vinifera
GSVIVG01024815001 Vitis vinifera
HanXRQChr01g0011001 Helianthus annuus
HanXRQChr05g0135561 Helianthus annuus
HanXRQChr08g0222181 Helianthus annuus
HanXRQChr12g0369341 Helianthus annuus
HanXRQChr12g0369351 Helianthus annuus
Haze_24235 Corylus avellana
Haze_27443 Corylus avellana
Hma1.2p1_0342F.1_g130700 Hydrangea macrophylla
Hma1.2p1_0710F.1_g207410 Hydrangea macrophylla
HPP92_015505 Vanilla planifolia
HPP92_018042 Vanilla planifolia
Hund04899 Selenicereus undatus
Hund13825 Selenicereus undatus
Hund18869 Selenicereus undatus
Lalb_Chr15g0082601 Lupinus albus
Lalb_Chr18g0050611 Lupinus albus
Lj1A143T40 Lonicera japonica
Lj1A949T60 Lonicera japonica
Lj2A1074T37 Lonicera japonica
Lj6g0014589 Lotus japonicus
Lsat_1_v5_gn_5_171040 Lactuca sativa
Lsat_1_v5_gn_5_41881 Lactuca sativa
Lsat_1_v5_gn_8_12580 Lactuca sativa
Lsat_1_v5_gn_8_72200 Lactuca sativa
Manes.01G165500 Manihot esculenta
Manes.02G123000 Manihot esculenta
Mapoly0075s0032 Marchantia polymorpha
Mapoly0086s0078 Marchantia polymorpha
MBI05_g34474_MAGBIO Magnolia biondii
MBI05_g34805_MAGBIO Magnolia biondii
MBI05_g36637_MAGBIO Magnolia biondii
MBI14_g13658_MAGBIO Magnolia biondii
MBI14_g32930_MAGBIO Magnolia biondii
MBI16_g37732_MAGBIO Magnolia biondii
MBI17_g28777_MAGBIO Magnolia biondii
MBI18_g09770_MAGBIO Magnolia biondii
MBI18_g30544_MAGBIO Magnolia biondii
MCO09G325 Micromonas commoda
MD03G1078300 Malus domestica
MD11G1083000 Malus domestica
MD13G1227300 Malus domestica
Medtr3g462130 Medicago truncatula
MELO3C025142.2 Cucumis melo
MELO3C025879.2 Cucumis melo
Migut.D02143 Erythranthe guttata
Migut.F01239 Erythranthe guttata
Migut.F01240 Erythranthe guttata
Migut.F01525 Erythranthe guttata
Migut.F01526 Erythranthe guttata
Migut.F01527 Erythranthe guttata
Migut.F01528 Erythranthe guttata
MSTRG.18604 Avicennia marina
MSTRG.21172 Avicennia marina
Nitab4.5_0000744g0120 Nicotiana tabacum
Nitab4.5_0011134g0030 Nicotiana tabacum
Nn2g11338 Nelumbo nucifera
Nn2g13583 Nelumbo nucifera
Oeu032673.1 Olea europaea
Oeu035018.1 Olea europaea
Oeu049279.1 Olea europaea
Os02g0805200 Oryza sativa ssp. japonica
Peaxi162Scf01058g00150 Petunia axillaris
PGR044G0110 Punica granatum
PGR091G0001 Punica granatum
PGR102G0182 Punica granatum
PGR119G1764 Punica granatum
PGSC0003DMG400030432 Solanum tuberosum
Phvul.003G297300 Phaseolus vulgaris
Phvul.005G019800 Phaseolus vulgaris
Phvul.006G137800 Phaseolus vulgaris
Phvul.008G283900 Phaseolus vulgaris
Phvul.L010543 Phaseolus vulgaris
Potri.001G247700 Populus trichocarpa
Potri.009G040900 Populus trichocarpa
Potri.010G193950 Populus trichocarpa
Pp3c12_18160 Physcomitrium patens
Pp3c4_11630 Physcomitrium patens
PRCOL_00005339 Prasinoderma coloniale
Prupe.6G063300 Prunus persica
Psat5g162720 Pisum sativum
PSO384G1519 Papaver somniferum
PSO585G0022 Papaver somniferum
QL01p029015 Quercus lobata
QL08p062470 Quercus lobata
QL93p0331_0124 Quercus lobata
RcHm_v2.0_Chr1g0353761 Rosa chinensis
RcHm_v2.0_Chr1g0365091 Rosa chinensis
RcHm_v2.0_Chr5g0067981 Rosa chinensis
Rhsim01G0113400 Rhododendron simsii
Rhsim01G0113500 Rhododendron simsii
Rhsim01G0152300 Rhododendron simsii
Rhsim01G0234200 Rhododendron simsii
Rhsim01G0234300 Rhododendron simsii
Rhsim03G0139300 Rhododendron simsii
Sabra09G0028700 Salix brachista
Sabra16G0150400 Salix brachista
SalBow3G1232 Salvia bowleyana
SalBow3G1958 Salvia bowleyana
SalBow5G5047 Salvia bowleyana
SalBow5G5737 Salvia bowleyana
Sc10g0002110 Simmondsia chinensis
Sc12g0001020 Simmondsia chinensis
Sed0001054 Sechium edule
Sed0017261 Sechium edule
Sed0018009 Sechium edule
SEGI_13348 Sequoiadendron giganteum
SEGI_20540 Sequoiadendron giganteum
SEGI_27416 Sequoiadendron giganteum
SGA_v2.0_scaffold2G01058 Striga asiatica
SGA_v2.0_scaffold77G25326 Striga asiatica
SGA_v2.0_scaffold95G28680 Striga asiatica
SHI38242 Sapria himalayana
SMO172G0020 Selaginella moellendorffii
Solyc06g076660.3 Solanum lycopersicum
Sopen06g033050 Solanum pennellii
Sp1g06120 Schrenkiella parvula
Sp4g12300 Schrenkiella parvula
TAR374G0089 Trochodendron aralioides
TAR374G0509 Trochodendron aralioides
TAR374G0519 Trochodendron aralioides
TAR374G0620 Trochodendron aralioides
TAR374G0750 Trochodendron aralioides
TAR374G1334 Trochodendron aralioides
TAR374G1441 Trochodendron aralioides
TAR374G1473 Trochodendron aralioides
TAR374G1596 Trochodendron aralioides
TAR375G0102 Trochodendron aralioides
TAR375G0427 Trochodendron aralioides
TAR375G0508 Trochodendron aralioides
TAR627G0896 Trochodendron aralioides
TAR633G0461 Trochodendron aralioides
TAR636G0236 Trochodendron aralioides
TAR636G2785 Trochodendron aralioides
THA.LOC104815801 Tarenaya hassleriana
THA.LOC104826301 Tarenaya hassleriana
Thecc.09G307900 Theobroma cacao
Thhalv10008509m.g Eutrema salsugineum
Thhalv10017099m.g Eutrema salsugineum
TPR.G15751 Trifolium pratense
TPR.G30115 Trifolium pratense
TWI31G0565 Tripterygium wilfordii
TWI59G0093 Tripterygium wilfordii
TWI59G0891 Tripterygium wilfordii
TWI75G1109 Tripterygium wilfordii
TWI81G0926 Tripterygium wilfordii
unitig_0.g1546 Utricularia gibba
unitig_747.g22020 Utricularia gibba
vmacro07002 Vaccinium macrocarpon
vmacro14574 Vaccinium macrocarpon
VMungo0540G1433 Vigna mungo
VMungo0647G0649 Vigna mungo
Zm00001eb192050 Zea mays
Zm00001eb258230 Zea mays

User provided reference genes

Program Settings