Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p15250 Brassica napus
A03p54870 Brassica napus
A07p37660 Brassica napus
A09p41880 Brassica napus
Aa31LG6G7190 Aethionema arabicum
Aa31LG7G6880 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5274 Anthoceros agrestis
Actinidia01545 Actinidia chinensis
Actinidia01546 Actinidia chinensis
Actinidia22173 Actinidia chinensis
Actinidia23297 Actinidia chinensis
Ah.05g170400 Amaranthus hybridus
Ah.12g052680 Amaranthus hybridus
AL1G36430 Arabidopsis lyrata
AL2G31020 Arabidopsis lyrata
AL7G29360 Arabidopsis lyrata
Aqoxy6G00050 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1SL9SW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.32VGA6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6P6FL8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E9E0TM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FN14EQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q3JEBE Arachis hypogaea
AT1G22882 Arabidopsis thaliana
AT1G71360 Arabidopsis thaliana
AT4G23950 Arabidopsis thaliana
ATR0602G241 Amborella trichopoda
ATR1089G140 Amborella trichopoda
Atru.chr13.2529 Acer truncatum
Atru.chr13.2536 Acer truncatum
Atru.chr4.19 Acer truncatum
Atru.chr9.1925 Acer truncatum
AUR62010861 Chenopodium quinoa
AUR62013385 Chenopodium quinoa
AUR62019860 Chenopodium quinoa
AUR62038536 Chenopodium quinoa
BcaB03g14894 Brassica carinata
BcaB03g14895 Brassica carinata
BcaB03g15602 Brassica carinata
BcaB07g32283 Brassica carinata
BcaC05g26194 Brassica carinata
BcaC08g45782 Brassica carinata
BcaC08g46569 Brassica carinata
BcaC09g50927 Brassica carinata
BcaNung01102 Brassica carinata
BcaNung04075 Brassica carinata
BcaNung04076 Brassica carinata
BolC1t01844H Brassica oleracea
BolC5t30893H Brassica oleracea
BolC6t38690H Brassica oleracea
BolC6t39601H Brassica oleracea
BolC7t45820H Brassica oleracea
BraA01t01465Z Brassica rapa
BraA07t31330Z Brassica rapa
BraA09t39676Z Brassica rapa
C01p19180 Brassica napus
C05p21970 Brassica napus
C06p45430 Brassica napus
C07p53250 Brassica napus
CAN.G43.9 Capsicum annuum
CAN.G567.10 Capsicum annuum
CANSAT21G0917 Cannabis sativa
CANSAT54G0037 Cannabis sativa
CARHR023240 Cardamine hirsuta
CARHR064640 Cardamine hirsuta
CARHR231370 Cardamine hirsuta
Carub.0001s2239 Capsella rubella
Carub.0002s1822 Capsella rubella
Carub.0007s1713 Capsella rubella
Ca_14159_v3 Cicer arietinum L.
Ca_27296_v3 Cicer arietinum L.
CBR_g49418 Chara braunii
Cc03_g12160 Coffea canephora
Cc08_g16250 Coffea canephora
Cc10_g13500 Coffea canephora
Cc10_g16030 Coffea canephora
CDE05G1808 Ceratophyllum demersum
CDE05G3281 Ceratophyllum demersum
CDE08G0772 Ceratophyllum demersum
CDE09G1086 Ceratophyllum demersum
Cfa008052 Carpinus fangiana
Cfa011984 Carpinus fangiana
Cfa024608 Carpinus fangiana
Ciclev10019431m.g Citrus clementina
Ciclev10024632m.g Citrus clementina
Ciclev10025294m.g Citrus clementina
CiPaw.03G013300 Carya illinoinensis
CiPaw.12G081500 Carya illinoinensis
ClCG01G001740 Citrullus lanatus
ClCG11G008380 Citrullus lanatus
COL.COLO4_10723 Corchorus olitorius
COL.COLO4_25135 Corchorus olitorius
Cpa.g.sc142.13 Carica papaya
Cpa.g.sc6.58 Carica papaya
Cpa.g.sc79.9 Carica papaya
Cre12.g517300 Chlamydomonas reinhardtii
CsaV3_2G033260 Cucumis sativus L.
CsaV3_5G001880 Cucumis sativus L.
CSS0009774 Camellia sinensis var. sinensis
CSS0011212 Camellia sinensis var. sinensis
CSS0017927 Camellia sinensis var. sinensis
CSS0018780 Camellia sinensis var. sinensis
DCAR_003508 Daucus carota
DCAR_030608 Daucus carota
Dinv22131 Davidia involucrata
Dinv37402 Davidia involucrata
Dinv37516 Davidia involucrata
Duzib068G0700 Durio zibethinus
Duzib116G0018 Durio zibethinus
ECA240G1497 Erigeron canadensis
ECA240G2397 Erigeron canadensis
ECA240G4646 Erigeron canadensis
ECA246G0396 Erigeron canadensis
ECA248G3678 Erigeron canadensis
EL10Ac1g01276 Beta vulgaris
EL10Ac5g12936 Beta vulgaris
Eucgr.E00881 Eucalyptus grandis
Eucgr.F02937 Eucalyptus grandis
Eucgr.H05061 Eucalyptus grandis
FAN04G1057 Fragaria x ananassa
FAN08G0678 Fragaria x ananassa
FAN13G1079 Fragaria x ananassa
FAN18G2206 Fragaria x ananassa
FvH4_2g00480 Fragaria vesca
FvH4_5g04871 Fragaria vesca
Glyma.01G226400 Glycine max
Glyma.04G110900 Glycine max
Glyma.06G323600 Glycine max
Glyma.09G002200 Glycine max
Glyma.11G016300 Glycine max
Glyma.12G242200 Glycine max
Gohir.A02G099600 Gossypium hirsutum
Gohir.A08G230300 Gossypium hirsutum
Gohir.D03G084100 Gossypium hirsutum
Gohir.D08G250700 Gossypium hirsutum
Gorai.003G078500 Gossypium raimondii
Gorai.004G267400 Gossypium raimondii
GSVIVG01019558001 Vitis vinifera
GSVIVG01037194001 Vitis vinifera
HanXRQChr03g0083371 Helianthus annuus
HanXRQChr11g0343561 Helianthus annuus
HanXRQChr17g0534941 Helianthus annuus
Haze_09088 Corylus avellana
Haze_13973 Corylus avellana
Hma1.2p1_0016F.1_g010870 Hydrangea macrophylla
HPP92_001199 Vanilla planifolia
HPP92_002036 Vanilla planifolia
Hund11379 Selenicereus undatus
Hund26942 Selenicereus undatus
Lalb_Chr03g0033791 Lupinus albus
Lalb_Chr15g0080081 Lupinus albus
Lalb_Chr16g0376871 Lupinus albus
Lalb_Chr16g0376881 Lupinus albus
Lalb_Chr18g0048461 Lupinus albus
Lj1A777T19 Lonicera japonica
Lj2A164G51 Lonicera japonica
Lj3g0005799 Lotus japonicus
Lj3g0006339 Lotus japonicus
Lj7A416G39 Lonicera japonica
Lj9A696T53 Lonicera japonica
LjContig00222g0002051 Lotus japonicus
Lsat_1_v5_gn_1_80781 Lactuca sativa
Lsat_1_v5_gn_3_11200 Lactuca sativa
Lsat_1_v5_gn_5_69280 Lactuca sativa
Lsat_1_v5_gn_6_83700 Lactuca sativa
Manes.02G008500 Manihot esculenta
Manes.02G204500 Manihot esculenta
Manes.18G112000 Manihot esculenta
Mapoly0045s0101 Marchantia polymorpha
Mapoly0050s0062 Marchantia polymorpha
MBI06_g32156_MAGBIO Magnolia biondii
MBI06_g44796_MAGBIO Magnolia biondii
MCO14G083 Micromonas commoda
MD05G1001800 Malus domestica
MD06G1109600 Malus domestica
MD10G1003000 Malus domestica
MD14G1130600 Malus domestica
MD14G1130700 Malus domestica
Medtr1g069420 Medicago truncatula
Medtr3g006320 Medicago truncatula
Medtr4g030960 Medicago truncatula
MELO3C005764.2 Cucumis melo
MELO3C008096.2 Cucumis melo
Migut.A00622 Erythranthe guttata
Migut.C01394 Erythranthe guttata
MSTRG.11914 Avicennia marina
MSTRG.1605 Avicennia marina
MSTRG.25502 Avicennia marina
Nitab4.5_0000009g0440 Nicotiana tabacum
Nitab4.5_0000798g0060 Nicotiana tabacum
Nitab4.5_0005962g0030 Nicotiana tabacum
Nitab4.5_0006797g0010 Nicotiana tabacum
Nn1g00254 Nelumbo nucifera
Nn5g27351 Nelumbo nucifera
Oeu020623.1 Olea europaea
Oeu028625.1 Olea europaea
Oeu038549.1 Olea europaea
Oeu055031.1 Olea europaea
Os01g0599900 Oryza sativa ssp. japonica
Os01g0876400 Oryza sativa ssp. japonica
Peaxi162Scf00074g00626 Petunia axillaris
Peaxi162Scf00078g00927 Petunia axillaris
PGR042G0815 Punica granatum
PGR042G1872 Punica granatum
PGR102G0719 Punica granatum
PGSC0003DMG400012268 Solanum tuberosum
PGSC0003DMG400022869 Solanum tuberosum
Phvul.002G165300 Phaseolus vulgaris
Phvul.005G002700 Phaseolus vulgaris
Phvul.011G216000 Phaseolus vulgaris
Potri.001G089700 Populus trichocarpa
Potri.003G141500 Populus trichocarpa
Potri.019G068900 Populus trichocarpa
Pp3c18_19540 Physcomitrium patens
Pp3c21_2240 Physcomitrium patens
Prupe.5G122600 Prunus persica
Prupe.8G004700 Prunus persica
Psat2g186000 Pisum sativum
Psat5g232240 Pisum sativum
Psat7g226400 Pisum sativum
PSO017G6296 Papaver somniferum
PSO063G4681 Papaver somniferum
PSO170G5396 Papaver somniferum
PSO782G3205 Papaver somniferum
QL02p030067 Quercus lobata
QL03p014861 Quercus lobata
QL09p001459 Quercus lobata
RcHm_v2.0_Chr6g0250471 Rosa chinensis
RcHm_v2.0_Chr7g0194211 Rosa chinensis
Rhsim12G0002200 Rhododendron simsii
Sabra01G0066100 Salix brachista
Sabra19G0082400 Salix brachista
SalBow1G7163 Salvia bowleyana
SalBow7G1246 Salvia bowleyana
Sc01g0010370 Simmondsia chinensis
Sc23g0000030 Simmondsia chinensis
Sed0005802 Sechium edule
Sed0017112 Sechium edule
Sed0018766 Sechium edule
SEGI_32465 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32635 Striga asiatica
SGA_v2.0_scaffold443G51685 Striga asiatica
SGA_v2.0_scaffold726G53520 Striga asiatica
SHI16852 Sapria himalayana
SMO115G0064 Selaginella moellendorffii
SMO115G0220 Selaginella moellendorffii
SMO115G0296 Selaginella moellendorffii
SMO119G0139 Selaginella moellendorffii
SMO119G0177 Selaginella moellendorffii
SMO119G0211 Selaginella moellendorffii
SMO119G0222 Selaginella moellendorffii
SMO119G0343 Selaginella moellendorffii
SMO119G0512 Selaginella moellendorffii
SMO250G0013 Selaginella moellendorffii
Solyc08g082540.3 Solanum lycopersicum
Sopen08g030800 Solanum pennellii
Sopen11g020600 Solanum pennellii
Sp1g20360 Schrenkiella parvula
Sp5g26530 Schrenkiella parvula
Sp7g21920 Schrenkiella parvula
TAR381G0803 Trochodendron aralioides
TAR629G2074 Trochodendron aralioides
TAR636G0446 Trochodendron aralioides
TAR636G1061 Trochodendron aralioides
TAR636G3564 Trochodendron aralioides
THA.LOC104806441 Tarenaya hassleriana
THA.LOC104814484 Tarenaya hassleriana
Thecc.03G300500 Theobroma cacao
Thecc.08G181300 Theobroma cacao
Thhalv10006998m.g Eutrema salsugineum
Thhalv10018312m.g Eutrema salsugineum
Thhalv10027053m.g Eutrema salsugineum
TPR.G25545 Trifolium pratense
TPR.G34099 Trifolium pratense
TPR.G37955 Trifolium pratense
TWI15G0564 Tripterygium wilfordii
TWI18G0049 Tripterygium wilfordii
unitig_578.g16115 Utricularia gibba
unitig_748.g7409 Utricularia gibba
unitig_8.g4903 Utricularia gibba
vmacro00945 Vaccinium macrocarpon
vmacro11344 Vaccinium macrocarpon
VMungo1080G1204 Vigna mungo
VMungo1127G1289 Vigna mungo
VMungo1215G0377 Vigna mungo
Zm00001eb145970 Zea mays
Zm00001eb357660 Zea mays
Zm00001eb366390 Zea mays

User provided reference genes

Program Settings