Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p29150 Brassica napus
A03p02530 Brassica napus
A03p02550 Brassica napus
A03p37070 Brassica napus
A05p37890 Brassica napus
A06p46600 Brassica napus
Aa31LG3G4780 Aethionema arabicum
Aa31LG3G4810 Aethionema arabicum
Aa31LG9G7580 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.101 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1252 Anthoceros agrestis
Actinidia01527 Actinidia chinensis
Actinidia01697 Actinidia chinensis
Ah.09g228410 Amaranthus hybridus
Ah.12g053690 Amaranthus hybridus
Ah.14g085290 Amaranthus hybridus
AL3G22990 Arabidopsis lyrata
AL6G16060 Arabidopsis lyrata
Aqoxy2G00069 Aquilegia oxysepala
Aqoxy3G02523 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2HCW1A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IXY6UZ Arachis hypogaea
AT3G11450 Arabidopsis thaliana
AT5G06110 Arabidopsis thaliana
AT5G45420 Arabidopsis thaliana
ATR0706G254 Amborella trichopoda
ATR1096G014 Amborella trichopoda
Atru.chr6.1776 Acer truncatum
Atru.chr8.2275 Acer truncatum
AUR62007223 Chenopodium quinoa
AUR62018777 Chenopodium quinoa
AUR62018932 Chenopodium quinoa
AUR62027776 Chenopodium quinoa
BcaB01g05739 Brassica carinata
BcaB01g05741 Brassica carinata
BcaB01g05745 Brassica carinata
BcaB01g05971 Brassica carinata
BcaB01g05973 Brassica carinata
BcaB04g18640 Brassica carinata
BcaB04g21135 Brassica carinata
BcaB06g25623 Brassica carinata
BcaC01g04119 Brassica carinata
BcaC01g04120 Brassica carinata
BcaC01g04986 Brassica carinata
BcaC03g16748 Brassica carinata
BcaC05g29373 Brassica carinata
BcaC06g31551 Brassica carinata
BcaC06g34433 Brassica carinata
BolC2t10678H Brassica oleracea
BolC3t12842H Brassica oleracea
BolC3t12844H Brassica oleracea
BolC3t16752H Brassica oleracea
BolC5t34333H Brassica oleracea
BolC7t43391H Brassica oleracea
BraA02t07122Z Brassica rapa
BraA03t09614Z Brassica rapa
BraA03t09616Z Brassica rapa
BraA03t12869Z Brassica rapa
BraA05t22583Z Brassica rapa
BraA06t27534Z Brassica rapa
C02p46230 Brassica napus
C03p02870 Brassica napus
C03p02880 Brassica napus
C03p44910 Brassica napus
C03p44920 Brassica napus
C05p56680 Brassica napus
C06p44380 Brassica napus
C07p28510 Brassica napus
CAN.G134.32 Capsicum annuum
CAN.G1445.16 Capsicum annuum
CAN.G74.14 Capsicum annuum
CANSAT01G1933 Cannabis sativa
CARHR086000 Cardamine hirsuta
CARHR176650 Cardamine hirsuta
CARHR206810 Cardamine hirsuta
Carub.0003s1077 Capsella rubella
Carub.0006s0498 Capsella rubella
Carub.0008s0269 Capsella rubella
Ca_15481_v3 Cicer arietinum L.
Ca_17655_v3 Cicer arietinum L.
CBR_g1010 Chara braunii
CBR_g17970 Chara braunii
Cc07_g11350 Coffea canephora
Cc08_g01890 Coffea canephora
CDE02G4687 Ceratophyllum demersum
CDE06G0617 Ceratophyllum demersum
CDE08G0904 Ceratophyllum demersum
Cfa014517 Carpinus fangiana
Cfa026155 Carpinus fangiana
Ciclev10011261m.g Citrus clementina
Ciclev10032127m.g Citrus clementina
CiPaw.05G050700 Carya illinoinensis
CiPaw.06G144200 Carya illinoinensis
CiPaw.12G060200 Carya illinoinensis
ClCG05G009460 Citrullus lanatus
COL.COLO4_17111 Corchorus olitorius
COL.COLO4_32862 Corchorus olitorius
Cpa.g.sc33.153 Carica papaya
Cpa.g.sc516.1 Carica papaya
Cre01.g003376 Chlamydomonas reinhardtii
Cre16.g695600 Chlamydomonas reinhardtii
CsaV3_3G019250 Cucumis sativus L.
CsaV3_3G049540 Cucumis sativus L.
CSS0011301 Camellia sinensis var. sinensis
CSS0018531 Camellia sinensis var. sinensis
CSS0042705 Camellia sinensis var. sinensis
DCAR_024978 Daucus carota
DCAR_029722 Daucus carota
Dinv04986 Davidia involucrata
Dinv25183 Davidia involucrata
Dinv28914 Davidia involucrata
Duzib068G0948 Durio zibethinus
Duzib114G1054 Durio zibethinus
Duzib128G0133 Durio zibethinus
Duzib205G1165 Durio zibethinus
ECA240G2921 Erigeron canadensis
ECA246G1023 Erigeron canadensis
ECA246G3634 Erigeron canadensis
ECA247G1498 Erigeron canadensis
EL10Ac1g01198 Beta vulgaris
EL10Ac1g01199 Beta vulgaris
EL10As14g24089 Beta vulgaris
Eucgr.E00315 Eucalyptus grandis
Eucgr.G03185 Eucalyptus grandis
FAN08G0952 Fragaria x ananassa
FAN13G2873 Fragaria x ananassa
FAN15G0402 Fragaria x ananassa
FAN18G1893 Fragaria x ananassa
FAN19G2233 Fragaria x ananassa
FAN24G1949 Fragaria x ananassa
FAN27G0852 Fragaria x ananassa
FvH4_1g11431 Fragaria vesca
FvH4_1g11450 Fragaria vesca
FvH4_2g17680 Fragaria vesca
FvH4_5g21140 Fragaria vesca
Glyma.05G189200 Glycine max
Glyma.08G188900 Glycine max
Glyma.10G122800 Glycine max
Glyma.12G168800 Glycine max
Gohir.A03G002800 Gossypium hirsutum
Gohir.A06G172300 Gossypium hirsutum
Gohir.A06G172500 Gossypium hirsutum
Gohir.D03G169500 Gossypium hirsutum
Gohir.D06G181100 Gossypium hirsutum
Gohir.D06G181300 Gossypium hirsutum
Gorai.003G179800 Gossypium raimondii
Gorai.010G212600 Gossypium raimondii
Gorai.010G212800 Gossypium raimondii
GSVIVG01011241001 Vitis vinifera
GSVIVG01012187001 Vitis vinifera
HanXRQChr02g0034471 Helianthus annuus
HanXRQChr03g0083651 Helianthus annuus
HanXRQChr03g0083661 Helianthus annuus
HanXRQChr03g0084781 Helianthus annuus
HanXRQChr06g0167311 Helianthus annuus
HanXRQChr07g0198621 Helianthus annuus
HanXRQChr17g0536391 Helianthus annuus
Haze_01812 Corylus avellana
Hma1.2p1_0233F.1_g098050 Hydrangea macrophylla
HPP92_025456 Vanilla planifolia
HPP92_028185 Vanilla planifolia
Hund11271 Selenicereus undatus
Lalb_Chr07g0184551 Lupinus albus
Lalb_Chr15g0090711 Lupinus albus
Lalb_Chr20g0123651 Lupinus albus
Lj4g0007705 Lotus japonicus
Lj6g0002670 Lotus japonicus
Lj9P652T21 Lonicera japonica
Lsat_1_v5_gn_3_22761 Lactuca sativa
Lsat_1_v5_gn_5_187701 Lactuca sativa
Lsat_1_v5_gn_6_76300 Lactuca sativa
Manes.15G172700 Manihot esculenta
Manes.15G172900 Manihot esculenta
Mapoly0042s0072 Marchantia polymorpha
Mapoly0114s0007 Marchantia polymorpha
MBI04_g31973_MAGBIO Magnolia biondii
MCO14G048 Micromonas commoda
MD05G1158000 Malus domestica
MD06G1040800 Malus domestica
MD10G1150700 Malus domestica
MD16G1268900 Malus domestica
Medtr3g113680 Medicago truncatula
Medtr3g114060 Medicago truncatula
Medtr7g109430 Medicago truncatula
Medtr8g093080 Medicago truncatula
MELO3C003372.2 Cucumis melo
MELO3C019433.2 Cucumis melo
Migut.A01004 Erythranthe guttata
Migut.I00387 Erythranthe guttata
MSTRG.11320 Avicennia marina
MSTRG.2508 Avicennia marina
Nitab4.5_0002055g0110 Nicotiana tabacum
Nitab4.5_0004168g0010 Nicotiana tabacum
Nitab4.5_0006693g0010 Nicotiana tabacum
Nitab4.5_0007610g0020 Nicotiana tabacum
Nn5g30795 Nelumbo nucifera
Nn7g37168 Nelumbo nucifera
Oeu004240.2 Olea europaea
Oeu028031.1 Olea europaea
Oeu037828.3 Olea europaea
Oeu050118.1 Olea europaea
Os04g0377932 Oryza sativa ssp. japonica
Os08g0159000 Oryza sativa ssp. japonica
Peaxi162Scf00084g00092 Petunia axillaris
Peaxi162Scf00220g00025 Petunia axillaris
PGR031G2891 Punica granatum
PGR042G0121 Punica granatum
PGSC0003DMG400003295 Solanum tuberosum
PGSC0003DMG400024213 Solanum tuberosum
Phvul.002G269900 Phaseolus vulgaris
Phvul.006G217200 Phaseolus vulgaris
Potri.001G035800 Populus trichocarpa
Potri.001G147000 Populus trichocarpa
Potri.003G190000 Populus trichocarpa
Pp3c12_1320 Physcomitrium patens
Pp3c14_5130 Physcomitrium patens
Pp3c17_1730 Physcomitrium patens
Pp3c20_16540 Physcomitrium patens
Pp3c23_9310 Physcomitrium patens
Pp3c24_8050 Physcomitrium patens
PRCOL_00001735 Prasinoderma coloniale
Prupe.5G047100 Prunus persica
Prupe.8G189400 Prunus persica
Psat0s1023g0040 Pisum sativum
Psat7g025360 Pisum sativum
Psat7g048120 Pisum sativum
PSO063G2459 Papaver somniferum
PSO478G0928 Papaver somniferum
PSO541G2672 Papaver somniferum
PSO541G2777 Papaver somniferum
PSO675G1354 Papaver somniferum
PSO675G2493 Papaver somniferum
PSO782G1486 Papaver somniferum
QL06p001430 Quercus lobata
QL12p007193 Quercus lobata
RcHm_v2.0_Chr2g0099031 Rosa chinensis
RcHm_v2.0_Chr6g0282661 Rosa chinensis
RcHm_v2.0_Chr7g0208261 Rosa chinensis
Rhsim01G0229700 Rhododendron simsii
Rhsim04G0038900 Rhododendron simsii
Rhsim07G0122300 Rhododendron simsii
Sabra01G0024900 Salix brachista
Sabra03G0139800 Salix brachista
Sc07g0008790 Simmondsia chinensis
Sc09g0004710 Simmondsia chinensis
Sed0003788 Sechium edule
Sed0011384 Sechium edule
Sed0018690 Sechium edule
Sed0020539 Sechium edule
SEGI_05673 Sequoiadendron giganteum
SEGI_19264 Sequoiadendron giganteum
SGA_v2.0_scaffold19G08809 Striga asiatica
SGA_v2.0_scaffold25G10982 Striga asiatica
SGA_v2.0_scaffold90G27898 Striga asiatica
SHI10334 Sapria himalayana
SHI11339 Sapria himalayana
SMO118G0142 Selaginella moellendorffii
SMO367G0595 Selaginella moellendorffii
Solyc01g096700.4 Solanum lycopersicum
Solyc08g077290.1 Solanum lycopersicum
Sopen01g040410 Solanum pennellii
Sopen08g025870 Solanum pennellii
Sp2g10370 Schrenkiella parvula
Sp3g09680 Schrenkiella parvula
Sp6g36800 Schrenkiella parvula
TAR375G0607 Trochodendron aralioides
TAR629G0471 Trochodendron aralioides
TAR629G0600 Trochodendron aralioides
THA.LOC104806190 Tarenaya hassleriana
THA.LOC104816587 Tarenaya hassleriana
THA.LOC104826826 Tarenaya hassleriana
Thecc.03G234200 Theobroma cacao
Thecc.10G132200 Theobroma cacao
Thhalv10012905m.g Eutrema salsugineum
Thhalv10020260m.g Eutrema salsugineum
TPR.G34548 Trifolium pratense
TPR.G34555 Trifolium pratense
TPR.G37318 Trifolium pratense
TWI12G1303 Tripterygium wilfordii
TWI31G1223 Tripterygium wilfordii
TWI75G0169 Tripterygium wilfordii
unitig_22.g6247 Utricularia gibba
unitig_32.g11505 Utricularia gibba
unitig_8.g3024 Utricularia gibba
unitig_8.g3025 Utricularia gibba
vmacro09396 Vaccinium macrocarpon
VMungo0251G1000 Vigna mungo
VMungo0540G0175 Vigna mungo
VMungo0540G1611 Vigna mungo
Zm00001eb085870 Zea mays
Zm00001eb085940 Zea mays
Zm00001eb391460 Zea mays
Zm00001eb391470 Zea mays
Zm00001eb391480 Zea mays
Zm00001eb415690 Zea mays

User provided reference genes

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