Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00910 Brassica napus
A02p08770 Brassica napus
A06p11480 Brassica napus
A08p31580 Brassica napus
A09p61400 Brassica napus
A10p26480 Brassica napus
Aa31LG3G13660 Aethionema arabicum
Aa31LG3G15950 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis
Actinidia01770 Actinidia chinensis
Actinidia02885 Actinidia chinensis
Actinidia13376 Actinidia chinensis
Actinidia13377 Actinidia chinensis
Actinidia13378 Actinidia chinensis
Actinidia14272 Actinidia chinensis
Actinidia15798 Actinidia chinensis
Actinidia15799 Actinidia chinensis
Actinidia15800 Actinidia chinensis
Actinidia15801 Actinidia chinensis
Ah.04g155130 Amaranthus hybridus
AL1G27540 Arabidopsis lyrata
AL6G21870 Arabidopsis lyrata
Aqoxy7G01538 Aquilegia oxysepala
Aqoxy7G02081 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3PI56D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C0TKG5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea
AT1G15420 Arabidopsis thaliana
AT5G11240 Arabidopsis thaliana
ATR0580G098 Amborella trichopoda
ATR0693G215 Amborella trichopoda
Atru.chr1.3116 Acer truncatum
Atru.chr4.2932 Acer truncatum
AUR62011569 Chenopodium quinoa
AUR62016160 Chenopodium quinoa
AUR62016386 Chenopodium quinoa
AUR62035074 Chenopodium quinoa
AUR62044456 Chenopodium quinoa
BcaB03g13061 Brassica carinata
BcaB03g14539 Brassica carinata
BcaB08g37077 Brassica carinata
BcaC03g13360 Brassica carinata
BcaC04g19248 Brassica carinata
BcaC05g25485 Brassica carinata
BcaC07g38789 Brassica carinata
BcaC07g41500 Brassica carinata
BcaNung01920 Brassica carinata
BolC2t06451H Brassica oleracea
BolC5t30096H Brassica oleracea
BolC8t49348H Brassica oleracea
BolC8t52042H Brassica oleracea
BolC9t59386H Brassica oleracea
BraA02t05075Z Brassica rapa
BraA02t05947Z Brassica rapa
BraA06t24325Z Brassica rapa
BraA08t35080Z Brassica rapa
BraA09t41510Z Brassica rapa
BraA09t41511Z Brassica rapa
BraA10t44705Z Brassica rapa
C02p04930 Brassica napus
C05p13600 Brassica napus
C08p17190 Brassica napus
C08p44950 Brassica napus
C09p65630 Brassica napus
CAN.G14.15 Capsicum annuum
CAN.G14.16 Capsicum annuum
CAN.G306.6 Capsicum annuum
CAN.G385.14 Capsicum annuum
CAN.G407.112 Capsicum annuum
CANSAT35G1122 Cannabis sativa
CANSAT56G4088 Cannabis sativa
CARHR015980 Cardamine hirsuta
CARHR202020 Cardamine hirsuta
CARHR202030 Cardamine hirsuta
CARHR202090 Cardamine hirsuta
CARHR202100 Cardamine hirsuta
Carub.0001s1522 Capsella rubella
Carub.0006s0971 Capsella rubella
Ca_20422_v3 Cicer arietinum L.
Ca_21469_v3 Cicer arietinum L.
CBR_g57080 Chara braunii
Cc03_g01330 Coffea canephora
Cc04_g04050 Coffea canephora
CDE05G3405 Ceratophyllum demersum
CDE06G0942 Ceratophyllum demersum
CDE07G0270 Ceratophyllum demersum
CDE11G1255 Ceratophyllum demersum
Cfa006257 Carpinus fangiana
Cfa015451 Carpinus fangiana
Cfa025422 Carpinus fangiana
Ciclev10004544m.g Citrus clementina
Ciclev10025131m.g Citrus clementina
CiPaw.01G144200 Carya illinoinensis
CiPaw.01G244200 Carya illinoinensis
CiPaw.02G154700 Carya illinoinensis
ClCG06G004860 Citrullus lanatus
ClCG09G002680 Citrullus lanatus
COL.COLO4_03675 Corchorus olitorius
COL.COLO4_12890 Corchorus olitorius
COL.COLO4_23901 Corchorus olitorius
COL.COLO4_34694 Corchorus olitorius
Cpa.g.sc336.4 Carica papaya
Cpa.g.sc9.113 Carica papaya
Cre12.g538500 Chlamydomonas reinhardtii
CsaV3_6G022650 Cucumis sativus L.
CsaV3_7G032650 Cucumis sativus L.
CSS0020497 Camellia sinensis var. sinensis
CSS0048718 Camellia sinensis var. sinensis
DCAR_025482 Daucus carota
DCAR_027041 Daucus carota
Dinv29708 Davidia involucrata
Dinv30569 Davidia involucrata
Dinv44338 Davidia involucrata
Duzib052G0572 Durio zibethinus
Duzib192G0585 Durio zibethinus
Duzib235G0185 Durio zibethinus
ECA240G0914 Erigeron canadensis
ECA247G0800 Erigeron canadensis
EL10Ac3g04935 Beta vulgaris
Eucgr.A01301 Eucalyptus grandis
Eucgr.A01314 Eucalyptus grandis
Eucgr.I02097 Eucalyptus grandis
FAN02G0515 Fragaria x ananassa
FAN05G0042 Fragaria x ananassa
FAN09G1184 Fragaria x ananassa
FAN11G0586 Fragaria x ananassa
FAN11G2064 Fragaria x ananassa
FAN14G3556 Fragaria x ananassa
FAN16G2654 Fragaria x ananassa
FAN21G1567 Fragaria x ananassa
FAN25G3025 Fragaria x ananassa
FvH4_3g30180 Fragaria vesca
FvH4_3g44480 Fragaria vesca
FvH4_6g31810 Fragaria vesca
Glyma.07G032500 Glycine max
Glyma.07G244100 Glycine max
Glyma.08G210000 Glycine max
Glyma.10G110200 Glycine max
Glyma.13G363200 Glycine max
Glyma.14G118600 Glycine max
Glyma.15G010600 Glycine max
Glyma.17G029800 Glycine max
Gohir.A05G124900 Gossypium hirsutum
Gohir.A09G063800 Gossypium hirsutum
Gohir.D05G125900 Gossypium hirsutum
Gohir.D09G062700 Gossypium hirsutum
Gorai.006G077500 Gossypium raimondii
Gorai.009G129900 Gossypium raimondii
GSVIVG01017246001 Vitis vinifera
GSVIVG01035079001 Vitis vinifera
GSVIVG01035087001 Vitis vinifera
HanXRQChr00c0540g0575621 Helianthus annuus
HanXRQChr03g0084951 Helianthus annuus
HanXRQChr04g0096701 Helianthus annuus
HanXRQChr04g0097161 Helianthus annuus
HanXRQChr04g0097181 Helianthus annuus
HanXRQChr04g0097191 Helianthus annuus
HanXRQChr04g0097221 Helianthus annuus
Haze_01137 Corylus avellana
Haze_01140 Corylus avellana
Haze_04567 Corylus avellana
Haze_05779 Corylus avellana
HPP92_021476 Vanilla planifolia
HPP92_021486 Vanilla planifolia
HPP92_021532 Vanilla planifolia
HPP92_021536 Vanilla planifolia
Hund00550 Selenicereus undatus
Hund06582 Selenicereus undatus
Hund11944 Selenicereus undatus
Lalb_Chr04g0262501 Lupinus albus
Lalb_Chr12g0201081 Lupinus albus
Lalb_Chr25g0279501 Lupinus albus
Lj3A826G75 Lonicera japonica
Lj3g0004862 Lotus japonicus
Lj3g0012512 Lotus japonicus
Lj4g0005439 Lotus japonicus
Lj4g0022588 Lotus japonicus
Lj5A688G9 Lonicera japonica
Lj5A68G60 Lonicera japonica
Lsat_1_v5_gn_1_33521 Lactuca sativa
Lsat_1_v5_gn_5_171140 Lactuca sativa
Lsat_1_v5_gn_6_76141 Lactuca sativa
Manes.04G116700 Manihot esculenta
Manes.15G008900 Manihot esculenta
Mapoly0078s0006 Marchantia polymorpha
MBI04_g10418_MAGBIO Magnolia biondii
MBI19_g05149_MAGBIO Magnolia biondii
MCO14G074 Micromonas commoda
MD12G1094800 Malus domestica
MD12G1094900 Malus domestica
MD13G1161900 Malus domestica
MD14G1090800 Malus domestica
MD15G1387900 Malus domestica
MD15G1388000 Malus domestica
MD16G1161700 Malus domestica
Medtr4g011300 Medicago truncatula
Medtr4g120740 Medicago truncatula
MELO3C021295.2 Cucumis melo
MELO3C023398.2 Cucumis melo
Migut.C01081 Erythranthe guttata
Migut.G00119 Erythranthe guttata
MSTRG.10121 Avicennia marina
MSTRG.1400 Avicennia marina
MSTRG.21910 Avicennia marina
Nitab4.5_0000378g0050 Nicotiana tabacum
Nitab4.5_0001298g0020 Nicotiana tabacum
Nitab4.5_0002257g0110 Nicotiana tabacum
Nitab4.5_0004432g0020 Nicotiana tabacum
Nitab4.5_0006574g0100 Nicotiana tabacum
Nn2g11949 Nelumbo nucifera
Nn3g21580 Nelumbo nucifera
Nn8g40612 Nelumbo nucifera
Oeu006431.1 Olea europaea
Oeu045971.1 Olea europaea
Oeu047159.1 Olea europaea
Os01g0649000 Oryza sativa ssp. japonica
Os03g0300300 Oryza sativa ssp. japonica
Os12g0634800 Oryza sativa ssp. japonica
Peaxi162Scf00065g01016 Petunia axillaris
Peaxi162Scf00274g00850 Petunia axillaris
PGR031G0824 Punica granatum
PGR031G2323 Punica granatum
PGSC0003DMG400000602 Solanum tuberosum
PGSC0003DMG400011805 Solanum tuberosum
Phvul.003G108800 Phaseolus vulgaris
Phvul.010G153600 Phaseolus vulgaris
Potri.001G173300 Populus trichocarpa
Potri.003G060900 Populus trichocarpa
Potri.010G005400 Populus trichocarpa
Pp3c7_70 Physcomitrium patens
PRCOL_00000654 Prasinoderma coloniale
PRCOL_00005222 Prasinoderma coloniale
Prupe.1G129200 Prunus persica
Prupe.6G012700 Prunus persica
Psat4g024880 Pisum sativum
Psat7g255200 Pisum sativum
PSO170G0153 Papaver somniferum
PSO170G5250 Papaver somniferum
PSO339G0191 Papaver somniferum
PSO407G0173 Papaver somniferum
PSO782G5325 Papaver somniferum
QL05p027693 Quercus lobata
QL06p010943 Quercus lobata
QL06p023750 Quercus lobata
RcHm_v2.0_Chr1g0331681 Rosa chinensis
RcHm_v2.0_Chr4g0423831 Rosa chinensis
RcHm_v2.0_Chr5g0081181 Rosa chinensis
Rhsim02G0006600 Rhododendron simsii
Rhsim08G0216500 Rhododendron simsii
Sabra01G0138500 Salix brachista
Sabra03G0035200 Salix brachista
Sabra10G0004600 Salix brachista
SalBow1G0696 Salvia bowleyana
SalBow2G2202 Salvia bowleyana
Sc12g0008870 Simmondsia chinensis
Sc19g0003390 Simmondsia chinensis
Sed0003011 Sechium edule
Sed0017061 Sechium edule
Sed0027048 Sechium edule
SEGI_26113 Sequoiadendron giganteum
SGA_v2.0_scaffold146G36232 Striga asiatica
SGA_v2.0_scaffold52G18905 Striga asiatica
SHI00911 Sapria himalayana
SHI18081 Sapria himalayana
SMO361G0163 Selaginella moellendorffii
Solyc02g030080.4 Solanum lycopersicum
Solyc03g116380.4 Solanum lycopersicum
Sopen02g009400 Solanum pennellii
Sopen03g035310 Solanum pennellii
Sp1g13790 Schrenkiella parvula
Sp6g32320 Schrenkiella parvula
TAR365G0623 Trochodendron aralioides
TAR383G0492 Trochodendron aralioides
THA.LOC104805829 Tarenaya hassleriana
THA.LOC104812495 Tarenaya hassleriana
Thecc.04G291300 Theobroma cacao
Thecc.06G073800 Theobroma cacao
Thhalv10008433m.g Eutrema salsugineum
Thhalv10012983m.g Eutrema salsugineum
TPR.G38626 Trifolium pratense
TPR.G3896 Trifolium pratense
TPR.G4827 Trifolium pratense
TPR.G8058 Trifolium pratense
TWI09G1448 Tripterygium wilfordii
TWI18G0202 Tripterygium wilfordii
unitig_37.g12403 Utricularia gibba
unitig_747.g21506 Utricularia gibba
vmacro02293 Vaccinium macrocarpon
vmacro13795 Vaccinium macrocarpon
vmacro18959 Vaccinium macrocarpon
VMungo0331G0533 Vigna mungo
VMungo1215G3370 Vigna mungo
Zm00001eb013980 Zea mays
Zm00001eb294740 Zea mays
Zm00001eb396530 Zea mays

User provided reference genes

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