Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p30510 Brassica napus
A07p43530 Brassica napus
A09p02570 Brassica napus
Aa31LG4G8250 Aethionema arabicum
Aa31LG5G2760 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1185 Anthoceros agrestis
Actinidia10329 Actinidia chinensis
Actinidia10330 Actinidia chinensis
Actinidia30495 Actinidia chinensis
Actinidia30781 Actinidia chinensis
Ah.05g169880 Amaranthus hybridus
AL2G38580 Arabidopsis lyrata
AL6G49670 Arabidopsis lyrata
Aqoxy4G00784 Aquilegia oxysepala
Aqoxy5G01901 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.03CQRM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.08G8AR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BH8VCP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D6EEK4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LTHX1H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WEDR4A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XXM254 Arachis hypogaea
AT1G78230 Arabidopsis thaliana
AT4G03260 Arabidopsis thaliana
ATR0782G120 Amborella trichopoda
ATR1132G090 Amborella trichopoda
Atru.chr13.1173 Acer truncatum
Atru.chr6.3096 Acer truncatum
AUR62018929 Chenopodium quinoa
AUR62025148 Chenopodium quinoa
AUR62027773 Chenopodium quinoa
AUR62033726 Chenopodium quinoa
BcaB01g01962 Brassica carinata
BcaB01g02515 Brassica carinata
BcaB03g15998 Brassica carinata
BcaC01g06694 Brassica carinata
BcaC03g15051 Brassica carinata
BcaC04g23986 Brassica carinata
BcaC08g47399 Brassica carinata
BolC2t08672H Brassica oleracea
BolC3t15999H Brassica oleracea
BolC6t40240H Brassica oleracea
BolC9t53191H Brassica oleracea
BraA03t12232Z Brassica rapa
BraA07t31865Z Brassica rapa
BraA09t35903Z Brassica rapa
C02p17510 Brassica napus
C02p25950 Brassica napus
C03p36920 Brassica napus
C06p52170 Brassica napus
C09p02630 Brassica napus
CAN.G193.32 Capsicum annuum
CAN.G640.24 Capsicum annuum
CANSAT25G1612 Cannabis sativa
CANSAT64G1962 Cannabis sativa
CARHR071690 Cardamine hirsuta
CARHR251710 Cardamine hirsuta
Carub.0002s2514 Capsella rubella
Carub.0006s3380 Capsella rubella
Ca_11470_v3 Cicer arietinum L.
Ca_15253_v3 Cicer arietinum L.
Ca_19097_v3 Cicer arietinum L.
Ca_30277_v3 Cicer arietinum L.
CBR_g13023 Chara braunii
Cc05_g05690 Coffea canephora
Cc10_g07090 Coffea canephora
CDE01G0144 Ceratophyllum demersum
CDE10G0135 Ceratophyllum demersum
CDE10G0212 Ceratophyllum demersum
CDE10G0424 Ceratophyllum demersum
CDE12G0644 Ceratophyllum demersum
Cfa013646 Carpinus fangiana
Cfa014493 Carpinus fangiana
Ciclev10000471m.g Citrus clementina
Ciclev10018305m.g Citrus clementina
CiPaw.03G166700 Carya illinoinensis
CiPaw.07G178800 Carya illinoinensis
CiPaw.08G045900 Carya illinoinensis
ClCG02G001480 Citrullus lanatus
ClCG11G014130 Citrullus lanatus
COL.COLO4_12056 Corchorus olitorius
COL.COLO4_13058 Corchorus olitorius
Cpa.g.sc34.55 Carica papaya
Cpa.g.sc36.143 Carica papaya
CsaV3_3G047530 Cucumis sativus L.
CsaV3_7G003980 Cucumis sativus L.
CSS0019585 Camellia sinensis var. sinensis
CSS0021059 Camellia sinensis var. sinensis
CSS0029165 Camellia sinensis var. sinensis
CSS0031428 Camellia sinensis var. sinensis
DCAR_012968 Daucus carota
DCAR_019222 Daucus carota
DCAR_021206 Daucus carota
Dinv02571 Davidia involucrata
Dinv13854 Davidia involucrata
Dinv13855 Davidia involucrata
Dinv14339 Davidia involucrata
Dinv44784 Davidia involucrata
Duzib041G0062 Durio zibethinus
Duzib052G1084 Durio zibethinus
Duzib093G1829 Durio zibethinus
Duzib116G0517 Durio zibethinus
Duzib132G0377 Durio zibethinus
Duzib248G0068 Durio zibethinus
ECA246G2824 Erigeron canadensis
EL10Ac1g01206 Beta vulgaris
EL10Ac9g20705 Beta vulgaris
Eucgr.B00027 Eucalyptus grandis
Eucgr.K00889 Eucalyptus grandis
FAN02G4012 Fragaria x ananassa
FAN05G3709 Fragaria x ananassa
FAN08G3415 Fragaria x ananassa
FAN09G0224 Fragaria x ananassa
FAN13G1947 Fragaria x ananassa
FAN14G0729 Fragaria x ananassa
FAN18G3225 Fragaria x ananassa
FvH4_5g37110 Fragaria vesca
FvH4_6g44290 Fragaria vesca
Glyma.04G101000 Glycine max
Glyma.06G102700 Glycine max
Glyma.06G300800 Glycine max
Glyma.12G103900 Glycine max
Glyma.13G089600 Glycine max
Glyma.14G174400 Glycine max
Gohir.A03G161700 Gossypium hirsutum
Gohir.A05G225600 Gossypium hirsutum
Gohir.D02G185000 Gossypium hirsutum
Gohir.D05G228300 Gossypium hirsutum
Gorai.005G207300 Gossypium raimondii
Gorai.009G236200 Gossypium raimondii
GSVIVG01000442001 Vitis vinifera
GSVIVG01009041001 Vitis vinifera
HanXRQChr01g0019931 Helianthus annuus
HanXRQChr05g0162691 Helianthus annuus
HanXRQChr17g0543131 Helianthus annuus
Haze_13027 Corylus avellana
Haze_22283 Corylus avellana
Hma1.2p1_0575F.1_g181670 Hydrangea macrophylla
Hma1.2p1_1090F.1_g255760 Hydrangea macrophylla
Hma1.2p1_3430F.1_g336000 Hydrangea macrophylla
HPP92_001795 Vanilla planifolia
HPP92_013354 Vanilla planifolia
HPP92_014086 Vanilla planifolia
HPP92_019305 Vanilla planifolia
Hund12427 Selenicereus undatus
Hund16899 Selenicereus undatus
Hund26968 Selenicereus undatus
Lalb_Chr03g0029011 Lupinus albus
Lalb_Chr08g0242091 Lupinus albus
Lalb_Chr19g0135581 Lupinus albus
Lalb_Chr23g0270541 Lupinus albus
Lj1A744T31 Lonicera japonica
Lj1g0004815 Lotus japonicus
Lj1g0005597 Lotus japonicus
Lj3g0009272 Lotus japonicus
Lj4A101G75 Lonicera japonica
Lsat_1_v5_gn_3_41820 Lactuca sativa
Lsat_1_v5_gn_4_69721 Lactuca sativa
Lsat_1_v5_gn_6_103260 Lactuca sativa
Manes.13G087750 Manihot esculenta
Manes.18G066400 Manihot esculenta
Mapoly0181s0005 Marchantia polymorpha
MBI02_g35744_MAGBIO Magnolia biondii
MBI02_g43405_MAGBIO Magnolia biondii
MBI05_g02439_MAGBIO Magnolia biondii
MBI05_g39047_MAGBIO Magnolia biondii
MD00G1009800 Malus domestica
MD08G1184400 Malus domestica
MD09G1099100 Malus domestica
MD17G1087400 Malus domestica
Medtr0148s0050 Medicago truncatula
Medtr3g074720 Medicago truncatula
Medtr5g064040 Medicago truncatula
MELO3C003571.2 Cucumis melo
MELO3C018781.2 Cucumis melo
Migut.H01194 Erythranthe guttata
Migut.M00371 Erythranthe guttata
MSTRG.14169 Avicennia marina
MSTRG.24451 Avicennia marina
Nitab4.5_0000017g0030 Nicotiana tabacum
Nitab4.5_0000232g0080 Nicotiana tabacum
Nitab4.5_0001948g0010 Nicotiana tabacum
Nitab4.5_0006653g0060 Nicotiana tabacum
Nitab4.5_0007108g0010 Nicotiana tabacum
Nitab4.5_0008821g0020 Nicotiana tabacum
Nn1g05386 Nelumbo nucifera
Nn1g06837 Nelumbo nucifera
Nn2g15617 Nelumbo nucifera
Nn3g20949 Nelumbo nucifera
Nn5g30079 Nelumbo nucifera
Oeu025473.1 Olea europaea
Oeu025478.1 Olea europaea
Oeu029435.1 Olea europaea
Oeu037166.1 Olea europaea
Oeu053213.1 Olea europaea
Os03g0190300 Oryza sativa ssp. japonica
Os05g0501600 Oryza sativa ssp. japonica
Os07g0106100 Oryza sativa ssp. japonica
Os10g0376200 Oryza sativa ssp. japonica
Peaxi162Scf00007g01817 Petunia axillaris
Peaxi162Scf00392g00317 Petunia axillaris
Peaxi162Scf00937g00010 Petunia axillaris
PGR031G0688 Punica granatum
PGR142G2855 Punica granatum
PGSC0003DMG400005292 Solanum tuberosum
PGSC0003DMG400026180 Solanum tuberosum
PGSC0003DMG400031471 Solanum tuberosum
Phvul.008G173900 Phaseolus vulgaris
Phvul.009G031700 Phaseolus vulgaris
Phvul.011G108900 Phaseolus vulgaris
Potri.002G097800 Populus trichocarpa
Potri.005G164000 Populus trichocarpa
Potri.013G150300 Populus trichocarpa
Potri.019G119300 Populus trichocarpa
Potri.019G119500 Populus trichocarpa
Pp3c16_8430 Physcomitrium patens
Pp3c1_7360 Physcomitrium patens
Pp3c25_2420 Physcomitrium patens
Prupe.1G518600 Prunus persica
Prupe.3G227100 Prunus persica
Psat0s3883g0040 Pisum sativum
Psat0ss2010g0120 Pisum sativum
Psat2g071800 Pisum sativum
Psat4g102920 Pisum sativum
Psat4g118680 Pisum sativum
Psat5g139720 Pisum sativum
PSO210G4340 Papaver somniferum
PSO447G0245 Papaver somniferum
PSO541G3406 Papaver somniferum
PSO675G7175 Papaver somniferum
QL08p036030 Quercus lobata
QL12p037001 Quercus lobata
RcHm_v2.0_Chr2g0161151 Rosa chinensis
RcHm_v2.0_Chr7g0238651 Rosa chinensis
RcHm_v2.0_Chr7g0243931 Rosa chinensis
RcHm_v2.0_Chr7g0243941 Rosa chinensis
Rhsim04G0058800 Rhododendron simsii
Rhsim06G0081100 Rhododendron simsii
RhsimUnG0197700 Rhododendron simsii
Sabra02G0076800 Salix brachista
Sabra19G0120100 Salix brachista
Sabra19G0133700 Salix brachista
Sabra19G0133900 Salix brachista
SalBow7G0997 Salvia bowleyana
Sc12g0002600 Simmondsia chinensis
Sc21g0002120 Simmondsia chinensis
Sc23g0000250 Simmondsia chinensis
Sed0005855 Sechium edule
Sed0017143 Sechium edule
Sed0026585 Sechium edule
SEGI_29472 Sequoiadendron giganteum
SGA_v2.0_scaffold49G18318 Striga asiatica
SHI19851 Sapria himalayana
SMO334G0027 Selaginella moellendorffii
SMO365G0036 Selaginella moellendorffii
Solyc04g074270.3 Solanum lycopersicum
Solyc07g053180.3 Solanum lycopersicum
Sopen04g029400 Solanum pennellii
Sopen07g026740 Solanum pennellii
Sp5g33370 Schrenkiella parvula
Sp6g03300 Schrenkiella parvula
SpUn0091_0020 Schrenkiella parvula
TAR376G1069 Trochodendron aralioides
TAR381G0365 Trochodendron aralioides
TAR625G0861 Trochodendron aralioides
TAR627G1012 Trochodendron aralioides
TAR628G0430 Trochodendron aralioides
TAR629G0894 Trochodendron aralioides
THA.LOC104801192 Tarenaya hassleriana
THA.LOC104807123 Tarenaya hassleriana
THA.LOC104810738 Tarenaya hassleriana
THA.LOC104826020 Tarenaya hassleriana
Thecc.02G167100 Theobroma cacao
Thecc.08G105400 Theobroma cacao
Thhalv10018319m.g Eutrema salsugineum
Thhalv10028489m.g Eutrema salsugineum
TPR.G24748 Trifolium pratense
TPR.G26157 Trifolium pratense
TPR.G30071 Trifolium pratense
TPR.G34975 Trifolium pratense
TWI12G0495 Tripterygium wilfordii
TWI18G0410 Tripterygium wilfordii
TWI36G1031 Tripterygium wilfordii
unitig_26.g9933 Utricularia gibba
unitig_26.g9934 Utricularia gibba
unitig_32.g11122 Utricularia gibba
unitig_52.g17338 Utricularia gibba
vmacro09308 Vaccinium macrocarpon
vmacro21263 Vaccinium macrocarpon
VMungo0647G1174 Vigna mungo
VMungo1127G0648 Vigna mungo
VMungo1309G1178 Vigna mungo
Zm00001eb006860 Zea mays
Zm00001eb027820 Zea mays
Zm00001eb298300 Zea mays
Zm00001eb401390 Zea mays

User provided reference genes

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