Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p37040 Brassica napus
A05p37990 Brassica napus
Aa31LG2G19750 Aethionema arabicum
Aa31LG3G4720 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2488 Anthoceros agrestis
Actinidia02914 Actinidia chinensis
Actinidia11286 Actinidia chinensis
Actinidia26494 Actinidia chinensis
Actinidia33960 Actinidia chinensis
Ah.08g220200 Amaranthus hybridus
AL3G22920 Arabidopsis lyrata
AL3G47690 Arabidopsis lyrata
AL5G36330 Arabidopsis lyrata
AL6G15960 Arabidopsis lyrata
Aqoxy1G00550 Aquilegia oxysepala
Aqoxy2G02345 Aquilegia oxysepala
Aqoxy4G02843 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.EZ06IQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F5T9UV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I9RV0S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L4WEQ9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RT3WI0 Arachis hypogaea
AT3G11400 Arabidopsis thaliana
AT5G06000 Arabidopsis thaliana
ATR0626G155 Amborella trichopoda
ATR0730G027 Amborella trichopoda
ATR0730G196 Amborella trichopoda
ATR0811G002 Amborella trichopoda
Atru.chr3.4009 Acer truncatum
Atru.chr3.4010 Acer truncatum
AUR62001728 Chenopodium quinoa
AUR62020047 Chenopodium quinoa
BcaB04g18638 Brassica carinata
BcaB04g21139 Brassica carinata
BcaB06g25629 Brassica carinata
BcaC01g04124 Brassica carinata
BcaC05g29380 Brassica carinata
BcaC05g29381 Brassica carinata
BcaC05g29382 Brassica carinata
BcaC06g32310 Brassica carinata
BcaC06g32314 Brassica carinata
BcaC06g32315 Brassica carinata
BcaC09g48168 Brassica carinata
BcaNung06231 Brassica carinata
BolC1t05319H Brassica oleracea
BolC1t05320H Brassica oleracea
BolC3t16748H Brassica oleracea
BolC5t34339H Brassica oleracea
BolC9t59838H Brassica oleracea
BraA01t04188Z Brassica rapa
BraA03t12866Z Brassica rapa
BraA05t22590Z Brassica rapa
C03p44880 Brassica napus
C05p56750 Brassica napus
C09p70790 Brassica napus
CAN.G1214.2 Capsicum annuum
CANSAT35G0998 Cannabis sativa
CANSAT54G2150 Cannabis sativa
CARHR041210 Cardamine hirsuta
CARHR085940 Cardamine hirsuta
CARHR207200 Cardamine hirsuta
Carub.0003s1071 Capsella rubella
Carub.0006s0490 Capsella rubella
Carub.0007s0988 Capsella rubella
Ca_17190_v3 Cicer arietinum L.
Ca_23667_v3 Cicer arietinum L.
CBR_g23734 Chara braunii
Cc01_g13420 Coffea canephora
CDE04G2802 Ceratophyllum demersum
CDE07G1870 Ceratophyllum demersum
CDE10G0483 Ceratophyllum demersum
CDE10G0570 Ceratophyllum demersum
Cfa001419 Carpinus fangiana
Cfa001420 Carpinus fangiana
Ciclev10013635m.g Citrus clementina
Ciclev10028957m.g Citrus clementina
CiPaw.13G087800 Carya illinoinensis
CiPaw.14G064600 Carya illinoinensis
ClCG04G012610 Citrullus lanatus
ClCG05G011940 Citrullus lanatus
COL.COLO4_18586 Corchorus olitorius
COL.COLO4_25504 Corchorus olitorius
COL.COLO4_34086 Corchorus olitorius
Cpa.g.sc119.20 Carica papaya
Cpa.g.sc19.264 Carica papaya
Cpa.g.sc33.164 Carica papaya
Cpa.g.sc81.88 Carica papaya
Cre06.g269450 Chlamydomonas reinhardtii
CsaV3_1G005090 Cucumis sativus L.
CsaV3_3G020490 Cucumis sativus L.
CSS0005404 Camellia sinensis var. sinensis
CSS0029686 Camellia sinensis var. sinensis
DCAR_011739 Daucus carota
DCAR_015638 Daucus carota
DCAR_018928 Daucus carota
Dinv16259 Davidia involucrata
Dinv17054 Davidia involucrata
Dinv31272 Davidia involucrata
Dinv34473 Davidia involucrata
Dinv35562 Davidia involucrata
Dinv42998 Davidia involucrata
Dinv43099 Davidia involucrata
Duzib083G0007 Durio zibethinus
Duzib093G0270 Durio zibethinus
Duzib106G1203 Durio zibethinus
Duzib114G0500 Durio zibethinus
Duzib168G2184 Durio zibethinus
ECA232G4723 Erigeron canadensis
ECA234G4573 Erigeron canadensis
ECA236G2472 Erigeron canadensis
ECA238G2277 Erigeron canadensis
EL10Ac7g16078 Beta vulgaris
Eucgr.G02978 Eucalyptus grandis
Eucgr.G02983 Eucalyptus grandis
Eucgr.G02987 Eucalyptus grandis
FAN11G0891 Fragaria x ananassa
FAN11G0902 Fragaria x ananassa
FAN11G2136 Fragaria x ananassa
FAN16G2103 Fragaria x ananassa
FAN16G2255 Fragaria x ananassa
FAN16G3558 Fragaria x ananassa
FAN18G4035 Fragaria x ananassa
FAN19G3198 Fragaria x ananassa
FAN21G0285 Fragaria x ananassa
FAN21G1967 Fragaria x ananassa
FAN23G1818 Fragaria x ananassa
FAN25G1318 Fragaria x ananassa
FAN25G1904 Fragaria x ananassa
FAN26G0405 Fragaria x ananassa
FAN26G2022 Fragaria x ananassa
FAN28G1447 Fragaria x ananassa
FvH4_1g06650 Fragaria vesca
FvH4_3g37030 Fragaria vesca
FvH4_3g37040 Fragaria vesca
FvH4_3g37070 Fragaria vesca
FvH4_4g04231 Fragaria vesca
FvH4_5g15960 Fragaria vesca
FvH4_5g15961 Fragaria vesca
Glyma.08G290700 Glycine max
Glyma.18G133400 Glycine max
Gohir.A03G045400 Gossypium hirsutum
Gohir.A06G166000 Gossypium hirsutum
Gohir.A10G223000 Gossypium hirsutum
Gohir.A13G225800 Gossypium hirsutum
Gohir.D03G121600 Gossypium hirsutum
Gohir.D06G171400 Gossypium hirsutum
Gohir.D07G145201 Gossypium hirsutum
Gohir.D10G235300 Gossypium hirsutum
Gohir.D13G231200 Gossypium hirsutum
Gorai.001G157100 Gossypium raimondii
Gorai.003G128700 Gossypium raimondii
Gorai.010G200400 Gossypium raimondii
Gorai.011G268900 Gossypium raimondii
Gorai.013G261800 Gossypium raimondii
GSVIVG01016472001 Vitis vinifera
GSVIVG01024872001 Vitis vinifera
GSVIVG01034107001 Vitis vinifera
HanXRQChr03g0064031 Helianthus annuus
HanXRQChr04g0122891 Helianthus annuus
HanXRQChr15g0496481 Helianthus annuus
Haze_17125 Corylus avellana
Haze_24187 Corylus avellana
Hma1.2p1_0026F.1_g016320 Hydrangea macrophylla
Hma1.2p1_0543F.1_g175450 Hydrangea macrophylla
HPP92_018130 Vanilla planifolia
HPP92_018169 Vanilla planifolia
Hund04914 Selenicereus undatus
Lalb_Chr05g0217161 Lupinus albus
Lalb_Chr05g0227941 Lupinus albus
Lalb_Chr09g0335141 Lupinus albus
Lalb_Chr16g0382451 Lupinus albus
Lj1A146G67 Lonicera japonica
Lj2g0017658 Lotus japonicus
Lj8A78G47 Lonicera japonica
LjContig00408g0010327 Lotus japonicus
Lsat_1_v5_gn_1_3841 Lactuca sativa
Lsat_1_v5_gn_1_63201 Lactuca sativa
Lsat_1_v5_gn_2_122081 Lactuca sativa
Lsat_1_v5_gn_7_97540 Lactuca sativa
Lsat_1_v5_gn_8_121520 Lactuca sativa
Lsat_1_v5_gn_8_125061 Lactuca sativa
Lsat_1_v5_gn_8_18580 Lactuca sativa
Lsat_1_v5_gn_8_72660 Lactuca sativa
Lsat_1_v5_gn_9_24141 Lactuca sativa
Manes.07G120100 Manihot esculenta
Manes.10G025200 Manihot esculenta
Mapoly0059s0037 Marchantia polymorpha
Mapoly0144s0016 Marchantia polymorpha
MBI05_g35174_MAGBIO Magnolia biondii
MBI14_g09017_MAGBIO Magnolia biondii
MBI14_g13886_MAGBIO Magnolia biondii
MCO14G118 Micromonas commoda
MD03G1048500 Malus domestica
MD11G1092800 Malus domestica
MD12G1084800 Malus domestica
Medtr5g017130 Medicago truncatula
Medtr8g031560 Medicago truncatula
Medtr8g107310 Medicago truncatula
MELO3C001947.2 Cucumis melo
MELO3C023779.2 Cucumis melo
Migut.B00987 Erythranthe guttata
Migut.D02319 Erythranthe guttata
MSTRG.20392 Avicennia marina
Nitab4.5_0000183g0090 Nicotiana tabacum
Nitab4.5_0001639g0050 Nicotiana tabacum
Nn1g04811 Nelumbo nucifera
Nn3g18450 Nelumbo nucifera
Oeu004180.1 Olea europaea
Oeu004181.1 Olea europaea
Oeu007668.3 Olea europaea
Os02g0788300 Oryza sativa ssp. japonica
Os02g0788400 Oryza sativa ssp. japonica
Os05g0303700 Oryza sativa ssp. japonica
Peaxi162Scf00445g00046 Petunia axillaris
Peaxi162Scf00611g00411 Petunia axillaris
PGR044G1890 Punica granatum
PGSC0003DMG400015702 Solanum tuberosum
PGSC0003DMG400016735 Solanum tuberosum
PGSC0003DMG400030074 Solanum tuberosum
PGSC0003DMG400038193 Solanum tuberosum
Phvul.003G054600 Phaseolus vulgaris
Phvul.004G012400 Phaseolus vulgaris
Potri.008G060000 Populus trichocarpa
Potri.010G199000 Populus trichocarpa
Pp3c15_21950 Physcomitrium patens
Pp3c9_17550 Physcomitrium patens
Pp3c9_20330 Physcomitrium patens
Prupe.6G068500 Prunus persica
Psat7g003600 Pisum sativum
Psat7g003640 Pisum sativum
PSO017G1767 Papaver somniferum
PSO017G3042 Papaver somniferum
PSO135G0930 Papaver somniferum
PSO170G1661 Papaver somniferum
PSO302G0264 Papaver somniferum
PSO591G0329 Papaver somniferum
PSO832G2038 Papaver somniferum
PSO832G3690 Papaver somniferum
QL01p028056 Quercus lobata
QL08p061462 Quercus lobata
QL08p061495 Quercus lobata
RcHm_v2.0_Chr2g0092401 Rosa chinensis
RcHm_v2.0_Chr5g0066421 Rosa chinensis
RcHm_v2.0_Chr5g0066441 Rosa chinensis
RcHm_v2.0_Chr5g0066451 Rosa chinensis
RcHm_v2.0_Chr6g0294311 Rosa chinensis
Rhsim01G0232600 Rhododendron simsii
Rhsim03G0136300 Rhododendron simsii
Rhsim05G0196200 Rhododendron simsii
Rhsim05G0198200 Rhododendron simsii
Sabra08G0044100 Salix brachista
Sabra10G0153200 Salix brachista
SalBow7G0543 Salvia bowleyana
Sc10g0001860 Simmondsia chinensis
Sc21g0006070 Simmondsia chinensis
Sed0012319 Sechium edule
Sed0012978 Sechium edule
Sed0023654 Sechium edule
SEGI_06546 Sequoiadendron giganteum
SEGI_14040 Sequoiadendron giganteum
SEGI_19103 Sequoiadendron giganteum
SGA_v2.0_scaffold4G01961 Striga asiatica
SMO202G0032 Selaginella moellendorffii
SMO334G0045 Selaginella moellendorffii
Solyc03g096680.2 Solanum lycopersicum
Solyc08g074790.3 Solanum lycopersicum
Solyc08g074840.1 Solanum lycopersicum
Solyc08g074860.1 Solanum lycopersicum
Sopen03g026900 Solanum pennellii
Sopen08g023390 Solanum pennellii
Sopen08g023450 Solanum pennellii
Sopen08g023460 Solanum pennellii
Sp3g09630 Schrenkiella parvula
Sp6g36880 Schrenkiella parvula
TAR369G1030 Trochodendron aralioides
TAR636G1259 Trochodendron aralioides
TAR636G2356 Trochodendron aralioides
THA.LOC104816580 Tarenaya hassleriana
THA.LOC104824289 Tarenaya hassleriana
Thecc.03G266300 Theobroma cacao
Thecc.09G313800 Theobroma cacao
Thecc.10G035300 Theobroma cacao
Thhalv10014839m.g Eutrema salsugineum
Thhalv10021248m.g Eutrema salsugineum
Thhalv10027172m.g Eutrema salsugineum
TPR.G1466 Trifolium pratense
TPR.G37806 Trifolium pratense
TPR.G4376 Trifolium pratense
TWI15G1231 Tripterygium wilfordii
TWI63G0850 Tripterygium wilfordii
unitig_37.g12926 Utricularia gibba
unitig_37.g12927 Utricularia gibba
vmacro04649 Vaccinium macrocarpon
vmacro10009 Vaccinium macrocarpon
vmacro10226 Vaccinium macrocarpon
vmacro14562 Vaccinium macrocarpon
VMungo0464G0067 Vigna mungo
VMungo0464G1823 Vigna mungo
Zm00001eb173560 Zea mays

User provided reference genes

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