Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p39700 Brassica napus
A05p40470 Brassica napus
A06p36210 Brassica napus
Aa31LG11G4600 Aethionema arabicum
Aa31LG5G18320 Aethionema arabicum
Actinidia13250 Actinidia chinensis
Actinidia22361 Actinidia chinensis
Actinidia27651 Actinidia chinensis
Actinidia27652 Actinidia chinensis
Ah.05g172490 Amaranthus hybridus
Ah.08g209290 Amaranthus hybridus
Ah.16g102520 Amaranthus hybridus
AL3G19110 Arabidopsis lyrata
AL6G37300 Arabidopsis lyrata
Aqoxy2G01045 Aquilegia oxysepala
Aqoxy3G03159 Aquilegia oxysepala
Aqoxy4G02593 Aquilegia oxysepala
Aqoxy5G03332 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DIZ14G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VW2QG0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea
AT3G07750 Arabidopsis thaliana
AT5G25500 Arabidopsis thaliana
ATR0624G131 Amborella trichopoda
ATR1156G046 Amborella trichopoda
Atru.chr6.3380 Acer truncatum
Atru.chr7.2264 Acer truncatum
Atru.chr7.2385 Acer truncatum
Atru.chr7.2387 Acer truncatum
AUR62004701 Chenopodium quinoa
AUR62006368 Chenopodium quinoa
AUR62012126 Chenopodium quinoa
AUR62023617 Chenopodium quinoa
AUR62029701 Chenopodium quinoa
AUR62040710 Chenopodium quinoa
BcaB04g21272 Brassica carinata
BcaB07g29994 Brassica carinata
BcaC05g29568 Brassica carinata
BcaNung07110 Brassica carinata
BolC1t05536H Brassica oleracea
BolC2t12011H Brassica oleracea
BolC5t34612H Brassica oleracea
BolC7t44761H Brassica oleracea
BraA01t04366Z Brassica rapa
BraA02t08935Z Brassica rapa
BraA05t22780Z Brassica rapa
BraA06t26543Z Brassica rapa
C02p59480 Brassica napus
C05p59570 Brassica napus
C07p42320 Brassica napus
CAN.G1394.37 Capsicum annuum
CANSAT21G0573 Cannabis sativa
CANSAT21G2220 Cannabis sativa
CANSAT54G2252 Cannabis sativa
CARHR082460 Cardamine hirsuta
CARHR187880 Cardamine hirsuta
Carub.0003s0733 Capsella rubella
Carub.0006s2336 Capsella rubella
Ca_12576_v3 Cicer arietinum L.
Ca_12577_v3 Cicer arietinum L.
Ca_22317_v3 Cicer arietinum L.
CBR_g31491 Chara braunii
Cc02_g30130 Coffea canephora
Cc08_g00970 Coffea canephora
CDE05G0385 Ceratophyllum demersum
CDE05G1607 Ceratophyllum demersum
Cfa016290 Carpinus fangiana
Cfa026312 Carpinus fangiana
Ciclev10010344m.g Citrus clementina
Ciclev10016158m.g Citrus clementina
CiPaw.01G209500 Carya illinoinensis
CiPaw.05G262300 Carya illinoinensis
ClCG05G017070 Citrullus lanatus
COL.COLO4_00195 Corchorus olitorius
COL.COLO4_17143 Corchorus olitorius
Cpa.g.sc211.23 Carica papaya
Cpa.g.sc533.2 Carica papaya
Cre03.g188200 Chlamydomonas reinhardtii
CsaV3_1G001380 Cucumis sativus L.
CsaV3_3G046550 Cucumis sativus L.
CSS0015125 Camellia sinensis var. sinensis
CSS0032500 Camellia sinensis var. sinensis
CSS0035678 Camellia sinensis var. sinensis
DCAR_006233 Daucus carota
Dinv21284 Davidia involucrata
Dinv26619 Davidia involucrata
Dinv26620 Davidia involucrata
Dinv30168 Davidia involucrata
Duzib114G0194 Durio zibethinus
Duzib168G0728 Durio zibethinus
Duzib187G0736 Durio zibethinus
ECA233G3411 Erigeron canadensis
ECA236G2666 Erigeron canadensis
ECA238G4099 Erigeron canadensis
EL10Ac1g00031 Beta vulgaris
EL10Ac1g00032 Beta vulgaris
EL10Ac2g04715 Beta vulgaris
Eucgr.C01786 Eucalyptus grandis
Eucgr.G01770 Eucalyptus grandis
Eucgr.G02573 Eucalyptus grandis
FAN02G1526 Fragaria x ananassa
FAN05G0939 Fragaria x ananassa
FAN09G1531 Fragaria x ananassa
FAN14G0117 Fragaria x ananassa
FAN20G0928 Fragaria x ananassa
FAN24G3345 Fragaria x ananassa
FAN27G0629 Fragaria x ananassa
FvH4_2g29530 Fragaria vesca
FvH4_6g40740 Fragaria vesca
Glyma.02G070100 Glycine max
Glyma.05G173000 Glycine max
Glyma.09G122801 Glycine max
Glyma.14G004366 Glycine max
Glyma.16G151700 Glycine max
Gohir.1Z049673 Gossypium hirsutum
Gohir.A05G411500 Gossypium hirsutum
Gohir.A09G019700 Gossypium hirsutum
Gohir.D04G004500 Gossypium hirsutum
Gohir.D09G019000 Gossypium hirsutum
Gorai.006G022700 Gossypium raimondii
Gorai.012G005700 Gossypium raimondii
GSVIVG01035523001 Vitis vinifera
GSVIVG01035933001 Vitis vinifera
HanXRQChr04g0126541 Helianthus annuus
HanXRQChr13g0402681 Helianthus annuus
HanXRQChr15g0466681 Helianthus annuus
HanXRQChr17g0537591 Helianthus annuus
Haze_00046 Corylus avellana
Hma1.2p1_0017F.1_g011480 Hydrangea macrophylla
Hma1.2p1_0108F.1_g051790 Hydrangea macrophylla
HPP92_000893 Vanilla planifolia
HPP92_016911 Vanilla planifolia
Hund01750 Selenicereus undatus
Lalb_Chr10g0095971 Lupinus albus
Lalb_Chr25g0279781 Lupinus albus
Lj1A789T53 Lonicera japonica
Lj1A794T53 Lonicera japonica
Lj2g0027163 Lotus japonicus
Lj5g0011751 Lotus japonicus
Lj5g0021748 Lotus japonicus
Lj8C25T21 Lonicera japonica
Lsat_1_v5_gn_5_105001 Lactuca sativa
Lsat_1_v5_gn_7_95300 Lactuca sativa
Manes.03G101000 Manihot esculenta
Manes.16G120100 Manihot esculenta
Mapoly0032s0043 Marchantia polymorpha
MBI04_g24206_MAGBIO Magnolia biondii
MBI07_g04746_MAGBIO Magnolia biondii
MBI07_g09667_MAGBIO Magnolia biondii
MBI16_g03601_MAGBIO Magnolia biondii
MBI16_g14386_MAGBIO Magnolia biondii
MBI16_g20582_MAGBIO Magnolia biondii
MBI16_g34946_MAGBIO Magnolia biondii
MCO02G242 Micromonas commoda
MD08G1146200 Malus domestica
MD09G1125700 Malus domestica
MD15G1118500 Malus domestica
MD15G1119600 Malus domestica
MD15G1122300 Malus domestica
MD17G1115700 Malus domestica
Medtr1g031820 Medicago truncatula
Medtr3g118420 Medicago truncatula
Medtr8g077430 Medicago truncatula
MELO3C003684.2 Cucumis melo
MELO3C008154.2 Cucumis melo
Migut.A00055 Erythranthe guttata
Migut.N01823 Erythranthe guttata
MSTRG.27160 Avicennia marina
Nitab4.5_0001265g0080 Nicotiana tabacum
Nitab4.5_0001816g0140 Nicotiana tabacum
Nitab4.5_0002007g0090 Nicotiana tabacum
Nitab4.5_0002007g0100 Nicotiana tabacum
Nitab4.5_0002007g0110 Nicotiana tabacum
Nitab4.5_0004440g0020 Nicotiana tabacum
Nitab4.5_0004440g0040 Nicotiana tabacum
Nitab4.5_0009119g0010 Nicotiana tabacum
Nitab4.5_0009247g0010 Nicotiana tabacum
Nitab4.5_0011591g0010 Nicotiana tabacum
Nitab4.5_0011591g0020 Nicotiana tabacum
Nitab4.5_0011728g0010 Nicotiana tabacum
Nitab4.5_0011728g0020 Nicotiana tabacum
Nitab4.5_0012587g0010 Nicotiana tabacum
Nitab4.5_0012587g0020 Nicotiana tabacum
Nitab4.5_0012587g0030 Nicotiana tabacum
Nitab4.5_0013543g0010 Nicotiana tabacum
Nitab4.5_0017994g0010 Nicotiana tabacum
Nn2g11964 Nelumbo nucifera
Nn3g19738 Nelumbo nucifera
Oeu009627.1 Olea europaea
Oeu027351.4 Olea europaea
Oeu034743.2 Olea europaea
Os11g0207300 Oryza sativa ssp. japonica
Os12g0403800 Oryza sativa ssp. japonica
Peaxi162Scf00002g00372 Petunia axillaris
Peaxi162Scf00015g02010 Petunia axillaris
Peaxi162Scf00015g02018 Petunia axillaris
Peaxi162Scf00065g01518 Petunia axillaris
Peaxi162Scf00108g00048 Petunia axillaris
Peaxi162Scf00108g00056 Petunia axillaris
Peaxi162Scf00108g00063 Petunia axillaris
Peaxi162Scf00327g00039 Petunia axillaris
Peaxi162Scf00365g00013 Petunia axillaris
Peaxi162Scf00365g00022 Petunia axillaris
PGR042G2797 Punica granatum
PGR044G1809 Punica granatum
PGSC0003DMG400012510 Solanum tuberosum
PGSC0003DMG400020787 Solanum tuberosum
Phvul.003G021200 Phaseolus vulgaris
Phvul.004G077200 Phaseolus vulgaris
Phvul.008G288600 Phaseolus vulgaris
Potri.006G251400 Populus trichocarpa
Potri.014G166200 Populus trichocarpa
Pp3c22_2380 Physcomitrium patens
PRCOL_00003395 Prasinoderma coloniale
Prupe.1G474900 Prunus persica
Prupe.3G198900 Prunus persica
Prupe.6G340200 Prunus persica
Psat6g044800 Pisum sativum
PSO017G3814 Papaver somniferum
PSO349G0250 Papaver somniferum
PSO541G0351 Papaver somniferum
PSO675G0487 Papaver somniferum
QL01p053808 Quercus lobata
QL02p019830 Quercus lobata
QL02p101242 Quercus lobata
QL02p101256 Quercus lobata
QL02p101294 Quercus lobata
QL02p101303 Quercus lobata
QL02p101482 Quercus lobata
QL09p012798 Quercus lobata
QL10p065406 Quercus lobata
QL10p065634 Quercus lobata
RcHm_v2.0_Chr2g0156191 Rosa chinensis
RcHm_v2.0_Chr4g0385201 Rosa chinensis
RcHm_v2.0_Chr6g0298391 Rosa chinensis
Rhsim01G0200000 Rhododendron simsii
Rhsim01G0212800 Rhododendron simsii
Rhsim02G0195500 Rhododendron simsii
Rhsim02G0198300 Rhododendron simsii
Rhsim06G0175300 Rhododendron simsii
Rhsim09G0014000 Rhododendron simsii
Sabra06G0196500 Salix brachista
Sabra14G0126500 Salix brachista
Sabra18G0031600 Salix brachista
SalBow1G0040 Salvia bowleyana
SalBow1G1877 Salvia bowleyana
SalBow4G2450 Salvia bowleyana
SalBow6G2105 Salvia bowleyana
SalBow7G3196 Salvia bowleyana
Sc04g0009070 Simmondsia chinensis
Sc11g0007780 Simmondsia chinensis
Sed0000756 Sechium edule
Sed0013246 Sechium edule
Sed0014080 Sechium edule
SEGI_02051 Sequoiadendron giganteum
SEGI_32706 Sequoiadendron giganteum
SEGI_38138 Sequoiadendron giganteum
SEGI_41370 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09144 Striga asiatica
SGA_v2.0_scaffold347G49567 Striga asiatica
SGA_v2.0_scaffold391G50648 Striga asiatica
SGA_v2.0_scaffold63G21756 Striga asiatica
SGA_v2.0_scaffold63G21761 Striga asiatica
SGA_v2.0_scaffold7G04028 Striga asiatica
SGA_v2.0_scaffold96G29097 Striga asiatica
SHI10149 Sapria himalayana
SHI18572 Sapria himalayana
SMO141G0199 Selaginella moellendorffii
Solyc08g007520.4 Solanum lycopersicum
Solyc08g061450.3 Solanum lycopersicum
Sopen08g003480 Solanum pennellii
Sopen08g016790 Solanum pennellii
Sp2g22030 Schrenkiella parvula
Sp3g06680 Schrenkiella parvula
TAR625G0243 Trochodendron aralioides
TAR629G0143 Trochodendron aralioides
THA.LOC104810431 Tarenaya hassleriana
THA.LOC104819037 Tarenaya hassleriana
Thecc.09G149800 Theobroma cacao
Thecc.10G082400 Theobroma cacao
Thhalv10005310m.g Eutrema salsugineum
Thhalv10021262m.g Eutrema salsugineum
TPR.G24144 Trifolium pratense
TPR.G36878 Trifolium pratense
TWI32G0967 Tripterygium wilfordii
TWI36G1349 Tripterygium wilfordii
unitig_32.g11479 Utricularia gibba
unitig_52.g17116 Utricularia gibba
vmacro03834 Vaccinium macrocarpon
vmacro12095 Vaccinium macrocarpon
VMungo1215G1712 Vigna mungo
Zm00001eb090760 Zea mays
Zm00001eb228810 Zea mays
Zm00001eb228830 Zea mays
Zm00001eb228850 Zea mays

User provided reference genes

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