Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p38530 Brassica napus
A07p10080 Brassica napus
A08p24710 Brassica napus
A08p24720 Brassica napus
A09p36390 Brassica napus
A10p30030 Brassica napus
Aa31LG3G3490 Aethionema arabicum
Aa31LG6G5560 Aethionema arabicum
Aa31sc52G160 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2291 Anthoceros agrestis
Actinidia03836 Actinidia chinensis
Actinidia06687 Actinidia chinensis
Actinidia18444 Actinidia chinensis
Ah.03g137290 Amaranthus hybridus
Ah.04g162530 Amaranthus hybridus
AL1G44010 Arabidopsis lyrata
AL3G22090 Arabidopsis lyrata
AL6G16400 Arabidopsis lyrata
Aqoxy1G00671 Aquilegia oxysepala
Aqoxy3G04018 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.48QRQ3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6YV4AU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.81IRQD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8W2N5I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JK5FYK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U15T1V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X26R4N Arachis hypogaea
AT1G30110 Arabidopsis thaliana
AT3G10620 Arabidopsis thaliana
AT5G06340 Arabidopsis thaliana
ATR0772G008 Amborella trichopoda
ATR0772G015 Amborella trichopoda
ATR0772G052 Amborella trichopoda
ATR1102G052 Amborella trichopoda
Atru.chr11.499 Acer truncatum
Atru.chr12.1065 Acer truncatum
Atru.chr8.1372 Acer truncatum
AUR62002758 Chenopodium quinoa
AUR62014177 Chenopodium quinoa
AUR62034171 Chenopodium quinoa
AUR62041549 Chenopodium quinoa
BcaB03g12194 Brassica carinata
BcaB03g13842 Brassica carinata
BcaB07g32613 Brassica carinata
BcaC01g00155 Brassica carinata
BcaC05g27037 Brassica carinata
BcaC05g29442 Brassica carinata
BcaC06g32368 Brassica carinata
BcaC06g35491 Brassica carinata
BcaNung06318 Brassica carinata
BolC3t19894H Brassica oleracea
BolC5t31616H Brassica oleracea
BolC5t34399H Brassica oleracea
BolC7t42037H Brassica oleracea
BolC9t59790H Brassica oleracea
BraA05t22644Z Brassica rapa
BraA07t28800Z Brassica rapa
BraA08t34426Z Brassica rapa
BraA09t39163Z Brassica rapa
BraA10t45043Z Brassica rapa
C03p76390 Brassica napus
C05p28940 Brassica napus
C05p57430 Brassica napus
C07p15460 Brassica napus
C09p70440 Brassica napus
CAN.G1298.27 Capsicum annuum
CAN.G1298.30 Capsicum annuum
CAN.G143.19 Capsicum annuum
CANSAT56G3041 Cannabis sativa
CANSAT64G2276 Cannabis sativa
CARHR029300 Cardamine hirsuta
CARHR085200 Cardamine hirsuta
CARHR207080 Cardamine hirsuta
Carub.0001s2833 Capsella rubella
Carub.0003s0985 Capsella rubella
Carub.0006s0523 Capsella rubella
Ca_10430_v3 Cicer arietinum L.
Ca_12598_v3 Cicer arietinum L.
CBR_g4841 Chara braunii
CBR_g4842 Chara braunii
Cc02_g09450 Coffea canephora
Cc11_g08550 Coffea canephora
CDE06G2055 Ceratophyllum demersum
CDE08G1623 Ceratophyllum demersum
Cfa008620 Carpinus fangiana
Cfa010527 Carpinus fangiana
Ciclev10012547m.g Citrus clementina
Ciclev10016625m.g Citrus clementina
Ciclev10016942m.g Citrus clementina
CiPaw.05G250500 Carya illinoinensis
CiPaw.06G011300 Carya illinoinensis
CiPaw.13G043300 Carya illinoinensis
ClCG05G021910 Citrullus lanatus
ClCG07G006670 Citrullus lanatus
ClCG10G018380 Citrullus lanatus
COL.COLO4_07826 Corchorus olitorius
COL.COLO4_20495 Corchorus olitorius
COL.COLO4_29581 Corchorus olitorius
Cpa.g.sc104.36 Carica papaya
Cpa.g.sc54.26 Carica papaya
Cpa.g.sc54.27 Carica papaya
Cpa.g.sc65.148 Carica papaya
CsaV3_3G037900 Cucumis sativus L.
CsaV3_5G013910 Cucumis sativus L.
CsaV3_5G035230 Cucumis sativus L.
CSS0001152 Camellia sinensis var. sinensis
CSS0010307 Camellia sinensis var. sinensis
CSS0013306 Camellia sinensis var. sinensis
CSS0013641 Camellia sinensis var. sinensis
CSS0013889 Camellia sinensis var. sinensis
CSS0016391 Camellia sinensis var. sinensis
CSS0018359 Camellia sinensis var. sinensis
CSS0019065 Camellia sinensis var. sinensis
CSS0022131 Camellia sinensis var. sinensis
CSS0028047 Camellia sinensis var. sinensis
CSS0028900 Camellia sinensis var. sinensis
CSS0031854 Camellia sinensis var. sinensis
CSS0032821 Camellia sinensis var. sinensis
CSS0035931 Camellia sinensis var. sinensis
CSS0037003 Camellia sinensis var. sinensis
CSS0038025 Camellia sinensis var. sinensis
CSS0045470 Camellia sinensis var. sinensis
DCAR_007300 Daucus carota
DCAR_019020 Daucus carota
DCAR_030224 Daucus carota
Dinv01493 Davidia involucrata
Dinv07656 Davidia involucrata
Dinv08414 Davidia involucrata
Duzib093G0765 Durio zibethinus
Duzib106G1497 Durio zibethinus
Duzib114G0416 Durio zibethinus
Duzib248G0715 Durio zibethinus
Duzib248G1532 Durio zibethinus
Duzib251G0846 Durio zibethinus
Duzib268G0189 Durio zibethinus
ECA232G2454 Erigeron canadensis
ECA234G2433 Erigeron canadensis
EL10Ac4g08715 Beta vulgaris
EL10Ac6g14046 Beta vulgaris
Eucgr.B02907 Eucalyptus grandis
Eucgr.J00282 Eucalyptus grandis
FAN12G1022 Fragaria x ananassa
FAN17G0378 Fragaria x ananassa
FAN19G0706 Fragaria x ananassa
FAN23G0338 Fragaria x ananassa
FAN26G2254 Fragaria x ananassa
FAN28G1664 Fragaria x ananassa
FvH4_1g22720 Fragaria vesca
FvH4_1g25050 Fragaria vesca
FvH4_4g23240 Fragaria vesca
FvH4_4g32510 Fragaria vesca
Glyma.07G165000 Glycine max
Glyma.09G117600 Glycine max
Glyma.10G195900 Glycine max
Glyma.20G194200 Glycine max
Gohir.A01G201700 Gossypium hirsutum
Gohir.A04G141700 Gossypium hirsutum
Gohir.A05G398700 Gossypium hirsutum
Gohir.D01G191600 Gossypium hirsutum
Gohir.D04G017200 Gossypium hirsutum
Gohir.D04G187200 Gossypium hirsutum
Gorai.002G235500 Gossypium raimondii
Gorai.012G019900 Gossypium raimondii
Gorai.012G181200 Gossypium raimondii
GSVIVG01011747001 Vitis vinifera
GSVIVG01029822001 Vitis vinifera
HanXRQChr05g0146141 Helianthus annuus
HanXRQChr16g0530191 Helianthus annuus
Haze_03465 Corylus avellana
Haze_10987 Corylus avellana
Hma1.2p1_0346F.1_g131380 Hydrangea macrophylla
HPP92_011926 Vanilla planifolia
Hund06804 Selenicereus undatus
Hund20677 Selenicereus undatus
Lalb_Chr02g0150961 Lupinus albus
Lalb_Chr10g0096151 Lupinus albus
Lalb_Chr17g0338631 Lupinus albus
Lj2C35G4 Lonicera japonica
Lj2g0007508 Lotus japonicus
Lj3C871T4 Lonicera japonica
Lj5g0008699 Lotus japonicus
Lj6A745T52 Lonicera japonica
Lju124C9T0 Lonicera japonica
Lsat_1_v5_gn_3_53200 Lactuca sativa
Lsat_1_v5_gn_4_13901 Lactuca sativa
Manes.07G085100 Manihot esculenta
Manes.09G045000 Manihot esculenta
Manes.15G128250 Manihot esculenta
Manes.17G077767 Manihot esculenta
Mapoly0016s0099 Marchantia polymorpha
MBI12_g46192_MAGBIO Magnolia biondii
MCO15G584 Micromonas commoda
MD03G1166000 Malus domestica
MD11G1185500 Malus domestica
MD13G1024600 Malus domestica
MD16G1027300 Malus domestica
Medtr1g031150 Medicago truncatula
Medtr1g090550 Medicago truncatula
MELO3C009535.2 Cucumis melo
MELO3C012337.2 Cucumis melo
MELO3C018305.2 Cucumis melo
Migut.F00851 Erythranthe guttata
Migut.L00357 Erythranthe guttata
MSTRG.27553 Avicennia marina
MSTRG.7619 Avicennia marina
MSTRG.904 Avicennia marina
Nitab4.5_0000688g0140 Nicotiana tabacum
Nitab4.5_0007799g0020 Nicotiana tabacum
Nn4g24187 Nelumbo nucifera
Nn6g34701 Nelumbo nucifera
Oeu015294.3 Olea europaea
Oeu015503.1 Olea europaea
Oeu022821.1 Olea europaea
Os04g0685800 Oryza sativa ssp. japonica
Peaxi162Scf00159g00912 Petunia axillaris
Peaxi162Scf00725g00520 Petunia axillaris
PGR044G0275 Punica granatum
PGR102G2152 Punica granatum
PGR142G0650 Punica granatum
PGR142G2238 Punica granatum
PGR142G2701 Punica granatum
PGR142G3218 Punica granatum
PGSC0003DMG400030491 Solanum tuberosum
Phvul.003G033100 Phaseolus vulgaris
Phvul.007G138600 Phaseolus vulgaris
Potri.006G203700 Populus trichocarpa
Potri.008G017900 Populus trichocarpa
Potri.008G130100 Populus trichocarpa
Potri.010G112000 Populus trichocarpa
Potri.010G242100 Populus trichocarpa
Potri.016G070900 Populus trichocarpa
Pp3c1_27180 Physcomitrium patens
PRCOL_00001250 Prasinoderma coloniale
PRCOL_00001254 Prasinoderma coloniale
Prupe.1G325900 Prunus persica
Prupe.4G266400 Prunus persica
Psat1g223760 Pisum sativum
Psat6g043440 Pisum sativum
Psat6g172040 Pisum sativum
PSO210G4565 Papaver somniferum
PSO339G3004 Papaver somniferum
PSO384G3628 Papaver somniferum
QL01p001515 Quercus lobata
QL01p001539 Quercus lobata
QL02p065358 Quercus lobata
QL04p047365 Quercus lobata
QL04p047504 Quercus lobata
QL04p047862 Quercus lobata
QL04p047880 Quercus lobata
RcHm_v2.0_Chr2g0117011 Rosa chinensis
RcHm_v2.0_Chr4g0441391 Rosa chinensis
Rhsim03G0096300 Rhododendron simsii
Rhsim09G0066200 Rhododendron simsii
Sabra06G0156900 Salix brachista
Sabra08G0011500 Salix brachista
Sabra08G0098700 Salix brachista
Sabra10G0082400 Salix brachista
Sabra10G0189400 Salix brachista
Sabra16G0071000 Salix brachista
Sabra16G0073200 Salix brachista
SalBow3G0114 Salvia bowleyana
Sc14g0007080 Simmondsia chinensis
Sc19g0003120 Simmondsia chinensis
Sed0011996 Sechium edule
Sed0019939 Sechium edule
Sed0025789 Sechium edule
SEGI_12913 Sequoiadendron giganteum
SEGI_14714 Sequoiadendron giganteum
SEGI_40911 Sequoiadendron giganteum
SGA_v2.0_scaffold115G32109 Striga asiatica
SGA_v2.0_scaffold115G32111 Striga asiatica
SGA_v2.0_scaffold38G15127 Striga asiatica
SMO347G0427 Selaginella moellendorffii
Solyc05g008000.3 Solanum lycopersicum
Solyc11g006580.3 Solanum lycopersicum
Sopen05g003850 Solanum pennellii
Sopen11g002520 Solanum pennellii
Sp1g25970 Schrenkiella parvula
Sp3g08930 Schrenkiella parvula
Sp6g36510 Schrenkiella parvula
TAR371G0116 Trochodendron aralioides
TAR623G0138 Trochodendron aralioides
THA.LOC104809957 Tarenaya hassleriana
THA.LOC104812672 Tarenaya hassleriana
THA.LOC104814304 Tarenaya hassleriana
THA.LOC104816473 Tarenaya hassleriana
Thecc.02G282600 Theobroma cacao
Thecc.05G103700 Theobroma cacao
Thecc.10G116500 Theobroma cacao
Thhalv10008899m.g Eutrema salsugineum
Thhalv10014104m.g Eutrema salsugineum
Thhalv10021498m.g Eutrema salsugineum
TPR.G36366 Trifolium pratense
TWI31G0039 Tripterygium wilfordii
TWI38G0136 Tripterygium wilfordii
TWI53G2012 Tripterygium wilfordii
TWI63G1643 Tripterygium wilfordii
TWI75G1226 Tripterygium wilfordii
TWI79G0504 Tripterygium wilfordii
unitig_46.g18643 Utricularia gibba
unitig_899.g15600 Utricularia gibba
vmacro00412 Vaccinium macrocarpon
vmacro07269 Vaccinium macrocarpon
VMungo0720G0332 Vigna mungo
VMungo1215G0041 Vigna mungo
Zm00001eb434200 Zea mays

User provided reference genes

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