Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p21400 Brassica napus
A03p49630 Brassica napus
A07p19380 Brassica napus
A08p12370 Brassica napus
Aa31LG10G5960 Aethionema arabicum
Aa31LG5G7320 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3892 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1645 Anthoceros agrestis
Actinidia13365 Actinidia chinensis
Actinidia14262 Actinidia chinensis
Actinidia15593 Actinidia chinensis
Actinidia23940 Actinidia chinensis
Actinidia40361 Actinidia chinensis
Ah.02g115840 Amaranthus hybridus
Ah.12g058520 Amaranthus hybridus
AL4G23430 Arabidopsis lyrata
AL7G38950 Arabidopsis lyrata
Aqoxy2G02125 Aquilegia oxysepala
Aqoxy2G02777 Aquilegia oxysepala
Aqoxy4G02927 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.LMI6R7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M8VE2Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T3PDCV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UNW18Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X88BGH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XZ5MVW Arachis hypogaea
AT2G28900 Arabidopsis thaliana
AT4G16160 Arabidopsis thaliana
ATR0559G109 Amborella trichopoda
ATR0707G001 Amborella trichopoda
Atru.chr3.3905 Acer truncatum
Atru.chr4.2988 Acer truncatum
AUR62010472 Chenopodium quinoa
AUR62016131 Chenopodium quinoa
AUR62030424 Chenopodium quinoa
AUR62041404 Chenopodium quinoa
BcaB02g10211 Brassica carinata
BcaB04g18368 Brassica carinata
BcaC02g11023 Brassica carinata
BcaC06g32992 Brassica carinata
BcaC06g33460 Brassica carinata
BcaC07g37957 Brassica carinata
BcaC07g37960 Brassica carinata
BcaC09g50313 Brassica carinata
BolC1t02615H Brassica oleracea
BolC4t23731H Brassica oleracea
BolC7t45295H Brassica oleracea
BolC8t48339H Brassica oleracea
BolC8t48340H Brassica oleracea
BraA01t02045Z Brassica rapa
BraA03t14062Z Brassica rapa
BraA07t29643Z Brassica rapa
BraA08t33218Z Brassica rapa
C01p26740 Brassica napus
C04p22080 Brassica napus
C07p47700 Brassica napus
CAN.G111.45 Capsicum annuum
CAN.G197.4 Capsicum annuum
CANSAT54G0240 Cannabis sativa
CANSAT78G0160 Cannabis sativa
CARHR122070 Cardamine hirsuta
CARHR222530 Cardamine hirsuta
Carub.0004s0989 Capsella rubella
Carub.0007s2539 Capsella rubella
Ca_01326_v3 Cicer arietinum L.
Ca_01872_v3 Cicer arietinum L.
Ca_21451_v3 Cicer arietinum L.
Cc01_g12870 Coffea canephora
Cc03_g00990 Coffea canephora
Cc03_g01000 Coffea canephora
CDE01G0513 Ceratophyllum demersum
CDE04G1891 Ceratophyllum demersum
CDE09G0525 Ceratophyllum demersum
CDE12G0150 Ceratophyllum demersum
Cfa009013 Carpinus fangiana
Cfa011503 Carpinus fangiana
Cfa015340 Carpinus fangiana
Ciclev10006030m.g Citrus clementina
Ciclev10029517m.g Citrus clementina
CiPaw.01G139900 Carya illinoinensis
CiPaw.13G094300 Carya illinoinensis
ClCG03G001540 Citrullus lanatus
ClCG06G004650 Citrullus lanatus
COL.COLO4_34650 Corchorus olitorius
Cpa.g.sc81.151 Carica papaya
Cpa.g.sc9.88 Carica papaya
CsaV3_1G034170 Cucumis sativus L.
CsaV3_6G022380 Cucumis sativus L.
CSS0007494 Camellia sinensis var. sinensis
CSS0035653 Camellia sinensis var. sinensis
CSS0046628 Camellia sinensis var. sinensis
CSS0048523 Camellia sinensis var. sinensis
DCAR_005338 Daucus carota
DCAR_005971 Daucus carota
DCAR_027009 Daucus carota
DCAR_027011 Daucus carota
Dinv12425 Davidia involucrata
Dinv15195 Davidia involucrata
Dinv17002 Davidia involucrata
Dinv42951 Davidia involucrata
Dinv43149 Davidia involucrata
Dinv44304 Davidia involucrata
Duzib150G1375 Durio zibethinus
Duzib151G0365 Durio zibethinus
ECA233G3490 Erigeron canadensis
ECA236G0657 Erigeron canadensis
ECA246G2588 Erigeron canadensis
EL10Ac3g05462 Beta vulgaris
EL10Ac5g12576 Beta vulgaris
Eucgr.A00350 Eucalyptus grandis
Eucgr.J02053 Eucalyptus grandis
FAN07G0871 Fragaria x ananassa
FAN07G2201 Fragaria x ananassa
FAN11G2331 Fragaria x ananassa
FAN12G1286 Fragaria x ananassa
FAN12G1542 Fragaria x ananassa
FAN16G0236 Fragaria x ananassa
FAN21G2955 Fragaria x ananassa
FAN21G3326 Fragaria x ananassa
FAN22G0740 Fragaria x ananassa
FAN23G0566 Fragaria x ananassa
FAN25G1103 Fragaria x ananassa
FvH4_3g36080 Fragaria vesca
FvH4_4g12790 Fragaria vesca
FvH4_4g19460 Fragaria vesca
Glyma.02G184800 Glycine max
Glyma.07G241400 Glycine max
Glyma.09G037800 Glycine max
Glyma.13G336100 Glycine max
Glyma.15G038200 Glycine max
Glyma.15G142900 Glycine max
Gohir.A07G098500 Gossypium hirsutum
Gohir.A09G235200 Gossypium hirsutum
Gohir.A10G171200 Gossypium hirsutum
Gohir.D07G102800 Gossypium hirsutum
Gohir.D09G236000 Gossypium hirsutum
Gohir.D10G178300 Gossypium hirsutum
Gorai.001G110700 Gossypium raimondii
Gorai.006G259100 Gossypium raimondii
Gorai.011G199300 Gossypium raimondii
GSVIVG01024962001 Vitis vinifera
GSVIVG01035019001 Vitis vinifera
HanXRQChr05g0145771 Helianthus annuus
HanXRQChr12g0364891 Helianthus annuus
HanXRQChr13g0395301 Helianthus annuus
Haze_01275 Corylus avellana
Haze_12046 Corylus avellana
Hma1.2p1_0035F.1_g022420 Hydrangea macrophylla
Hma1.2p1_0418F.1_g149160 Hydrangea macrophylla
Hma1.2p1_0418F.1_g149170 Hydrangea macrophylla
Hma1.2p1_0418F.1_g149180 Hydrangea macrophylla
Hma1.2p1_1542F.1_g289710 Hydrangea macrophylla
HPP92_001059 Vanilla planifolia
HPP92_001148 Vanilla planifolia
Hund14299 Selenicereus undatus
Lalb_Chr06g0165391 Lupinus albus
Lalb_Chr07g0182101 Lupinus albus
Lalb_Chr13g0298411 Lupinus albus
Lalb_Chr14g0375101 Lupinus albus
Lalb_Chr18g0048831 Lupinus albus
Lj3C829T9 Lonicera japonica
Lj3g0015229 Lotus japonicus
Lj4g0009380 Lotus japonicus
Lj6A689T50 Lonicera japonica
Lj6A689T51 Lonicera japonica
Lj6g0023775 Lotus japonicus
Lsat_1_v5_gn_6_114360 Lactuca sativa
Lsat_1_v5_gn_6_18361 Lactuca sativa
Manes.01G174000 Manihot esculenta
Manes.07G090900 Manihot esculenta
Manes.07G091400 Manihot esculenta
Manes.15G005500 Manihot esculenta
Mapoly0051s0077 Marchantia polymorpha
Mapoly0097s0034 Marchantia polymorpha
Mapoly0133s0032 Marchantia polymorpha
MBI02_g25405_MAGBIO Magnolia biondii
MBI04_g37587_MAGBIO Magnolia biondii
MBI12_g12388_MAGBIO Magnolia biondii
MBI14_g20104_MAGBIO Magnolia biondii
MBI15_g25005_MAGBIO Magnolia biondii
MBI18_g31671_MAGBIO Magnolia biondii
MD03G1093500 Malus domestica
MD11G1108300 Malus domestica
MD11G1108500 Malus domestica
MD11G1108700 Malus domestica
MD13G1156400 Malus domestica
MD16G1157300 Malus domestica
Medtr2g034550 Medicago truncatula
Medtr2g096900 Medicago truncatula
Medtr2g096920 Medicago truncatula
Medtr4g121900 Medicago truncatula
MELO3C020637.2 Cucumis melo
MELO3C021274.2 Cucumis melo
Migut.D02101 Erythranthe guttata
Migut.G00088 Erythranthe guttata
Migut.N00049 Erythranthe guttata
MSTRG.17832 Avicennia marina
MSTRG.3864 Avicennia marina
Nitab4.5_0000272g0180 Nicotiana tabacum
Nitab4.5_0001414g0010 Nicotiana tabacum
Nitab4.5_0002836g0030 Nicotiana tabacum
Nitab4.5_0003294g0030 Nicotiana tabacum
Nn2g10364 Nelumbo nucifera
Nn3g21677 Nelumbo nucifera
Nn5g26913 Nelumbo nucifera
Nn5g26914 Nelumbo nucifera
Oeu016484.2 Olea europaea
Oeu033900.1 Olea europaea
Oeu053913.2 Olea europaea
Os01g0303300 Oryza sativa ssp. japonica
Os01g0974100 Oryza sativa ssp. japonica
Os03g0305600 Oryza sativa ssp. japonica
Os05g0111200 Oryza sativa ssp. japonica
Peaxi162Scf00032g02518 Petunia axillaris
Peaxi162Scf00065g00015 Petunia axillaris
Peaxi162Scf00587g00410 Petunia axillaris
PGR031G3841 Punica granatum
PGR119G2250 Punica granatum
PGSC0003DMG400009672 Solanum tuberosum
PGSC0003DMG400026692 Solanum tuberosum
Phvul.009G255100 Phaseolus vulgaris
Phvul.L005543 Phaseolus vulgaris
Potri.001G239900 Populus trichocarpa
Potri.008G107200 Populus trichocarpa
Potri.010G142300 Populus trichocarpa
Pp3c10_18330 Physcomitrium patens
Pp3c12_16880 Physcomitrium patens
Pp3c14_26410 Physcomitrium patens
Pp3c17_23180 Physcomitrium patens
Pp3c1_40570 Physcomitrium patens
Pp3c2_610 Physcomitrium patens
Pp3c3_19150 Physcomitrium patens
Pp3c3_28050 Physcomitrium patens
Pp3c4_12600 Physcomitrium patens
Prupe.1G122200 Prunus persica
Prupe.6G077600 Prunus persica
Psat0s2066g0040 Pisum sativum
Psat3g002000 Pisum sativum
Psat3g023720 Pisum sativum
Psat3g023760 Pisum sativum
Psat5g284600 Pisum sativum
PSO210G4136 Papaver somniferum
PSO339G1022 Papaver somniferum
PSO384G4692 Papaver somniferum
PSO761G0631 Papaver somniferum
QL01p032005 Quercus lobata
QL06p011615 Quercus lobata
RcHm_v2.0_Chr4g0412121 Rosa chinensis
RcHm_v2.0_Chr4g0424511 Rosa chinensis
RcHm_v2.0_Chr5g0064511 Rosa chinensis
Rhsim01G0227500 Rhododendron simsii
Rhsim02G0005200 Rhododendron simsii
Rhsim04G0234100 Rhododendron simsii
Sabra08G0081100 Salix brachista
Sabra10G0110000 Salix brachista
Sabra16G0144600 Salix brachista
Sabra16G0144700 Salix brachista
SalBow3G3211 Salvia bowleyana
SalBow5G1439 Salvia bowleyana
SalBow8G1198 Salvia bowleyana
SalBow8G1617 Salvia bowleyana
Sc07g0007940 Simmondsia chinensis
Sc25g0003390 Simmondsia chinensis
Sed0011045 Sechium edule
Sed0016872 Sechium edule
SEGI_00670 Sequoiadendron giganteum
SEGI_11453 Sequoiadendron giganteum
SEGI_35288 Sequoiadendron giganteum
SEGI_36733 Sequoiadendron giganteum
SGA_v2.0_scaffold119G32666 Striga asiatica
SMO147G0192 Selaginella moellendorffii
SMO147G0258 Selaginella moellendorffii
SMO358G0166 Selaginella moellendorffii
SMO358G0445 Selaginella moellendorffii
Solyc01g060070.3 Solanum lycopersicum
Sopen01g026250 Solanum pennellii
Sopen06g001450 Solanum pennellii
Sp4g11710 Schrenkiella parvula
Sp7g14670 Schrenkiella parvula
TAR365G0957 Trochodendron aralioides
TAR633G2335 Trochodendron aralioides
TAR636G3015 Trochodendron aralioides
TAR636G3310 Trochodendron aralioides
THA.LOC104800661 Tarenaya hassleriana
THA.LOC104802605 Tarenaya hassleriana
THA.LOC104820299 Tarenaya hassleriana
Thecc.04G297400 Theobroma cacao
Thecc.09G322000 Theobroma cacao
Thhalv10017379m.g Eutrema salsugineum
Thhalv10026380m.g Eutrema salsugineum
TPR.G139 Trifolium pratense
TPR.G16828 Trifolium pratense
TPR.G34319 Trifolium pratense
TPR.G34323 Trifolium pratense
TWI09G1315 Tripterygium wilfordii
TWI79G0621 Tripterygium wilfordii
unitig_32.g10635 Utricularia gibba
unitig_747.g22031 Utricularia gibba
vmacro08063 Vaccinium macrocarpon
vmacro14518 Vaccinium macrocarpon
vmacro15190 Vaccinium macrocarpon
VMungo1080G1891 Vigna mungo
VMungo1309G3089 Vigna mungo
Zm00001eb014550 Zea mays
Zm00001eb130200 Zea mays
Zm00001eb266860 Zea mays
Zm00001eb266870 Zea mays
Zm00001eb355790 Zea mays

User provided reference genes

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