Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p24810 Brassica napus
A02p10980 Brassica napus
A04p15080 Brassica napus
A06p35210 Brassica napus
A07p21020 Brassica napus
A10p11010 Brassica napus
Aa31LG11G3660 Aethionema arabicum
Aa31LG3G9750 Aethionema arabicum
Aa31LG4G17900 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1884 Anthoceros agrestis
Actinidia08680 Actinidia chinensis
Actinidia27287 Actinidia chinensis
Actinidia34252 Actinidia chinensis
Ah.07g197930 Amaranthus hybridus
Ah.07g204960 Amaranthus hybridus
Ah.12g053190 Amaranthus hybridus
Ah.13g070680 Amaranthus hybridus
AL5G29110 Arabidopsis lyrata
AL6G35970 Arabidopsis lyrata
AL7G47280 Arabidopsis lyrata
AL7G50530 Arabidopsis lyrata
AL8G28300 Arabidopsis lyrata
Aqoxy5G04263 Aquilegia oxysepala
Aqoxy7G00021 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.UWK6R0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V55W7Y Arachis hypogaea
AT3G49350 Arabidopsis thaliana
AT5G24390 Arabidopsis thaliana
AT5G41940 Arabidopsis thaliana
AT5G53570 Arabidopsis thaliana
ATR0620G147 Amborella trichopoda
Atru.chr12.2333 Acer truncatum
Atru.chr9.1888 Acer truncatum
Atru.chr9.1889 Acer truncatum
Atru.chr9.1890 Acer truncatum
AUR62006035 Chenopodium quinoa
AUR62007051 Chenopodium quinoa
AUR62019915 Chenopodium quinoa
AUR62035591 Chenopodium quinoa
BcaB05g22057 Brassica carinata
BcaB05g23107 Brassica carinata
BcaB06g27681 Brassica carinata
BcaB06g27682 Brassica carinata
BcaB08g35723 Brassica carinata
BcaC02g08902 Brassica carinata
BcaC02g08903 Brassica carinata
BcaC03g14406 Brassica carinata
BcaC04g20438 Brassica carinata
BcaC04g21812 Brassica carinata
BcaC06g35645 Brassica carinata
BcaC08g44570 Brassica carinata
BcaC09g49938 Brassica carinata
BcaNung01229 Brassica carinata
BcaNung02034 Brassica carinata
BolC1t03034H Brassica oleracea
BolC2t07951H Brassica oleracea
BolC4t26519H Brassica oleracea
BolC6t37213H Brassica oleracea
BolC7t41746H Brassica oleracea
BolC7t44862H Brassica oleracea
BolC9t57232H Brassica oleracea
BraA01t02392Z Brassica rapa
BraA02t06163Z Brassica rapa
BraA04t17150Z Brassica rapa
BraA06t26443Z Brassica rapa
BraA07t29788Z Brassica rapa
BraA07t29789Z Brassica rapa
BraA10t43193Z Brassica rapa
C01p31000 Brassica napus
C02p18180 Brassica napus
C06p20350 Brassica napus
C07p12620 Brassica napus
C07p43340 Brassica napus
C09p27210 Brassica napus
C09p43450 Brassica napus
CAN.G414.11 Capsicum annuum
CAN.G481.68 Capsicum annuum
CANSAT21G0381 Cannabis sativa
CARHR158290 Cardamine hirsuta
CARHR189030 Cardamine hirsuta
CARHR212620 Cardamine hirsuta
CARHR266700 Cardamine hirsuta
Carub.0005s1572 Capsella rubella
Carub.0006s2222 Capsella rubella
Carub.0007s3344 Capsella rubella
Carub.0008s1374 Capsella rubella
Ca_12774_v3 Cicer arietinum L.
Ca_16748_v3 Cicer arietinum L.
CBR_g31439 Chara braunii
Cc02_g01050 Coffea canephora
Cc08_g16720 Coffea canephora
CDE02G0873 Ceratophyllum demersum
CDE02G3034 Ceratophyllum demersum
CDE11G0198 Ceratophyllum demersum
Cfa011926 Carpinus fangiana
Cfa016187 Carpinus fangiana
Cfa019811 Carpinus fangiana
Ciclev10019458m.g Citrus clementina
Ciclev10019568m.g Citrus clementina
CiPaw.05G201700 Carya illinoinensis
CiPaw.06G043200 Carya illinoinensis
CiPaw.11G112600 Carya illinoinensis
CiPaw.12G077500 Carya illinoinensis
ClCG01G000200 Citrullus lanatus
ClCG05G009160 Citrullus lanatus
COL.COLO4_14338 Corchorus olitorius
Cpa.g.sc3.130 Carica papaya
Cpa.g.sc3.131 Carica papaya
Cre12.g532600 Chlamydomonas reinhardtii
Cre17.g715400 Chlamydomonas reinhardtii
CsaV3_3G019620 Cucumis sativus L.
CsaV3_5G000240 Cucumis sativus L.
CSS0004177 Camellia sinensis var. sinensis
CSS0013763 Camellia sinensis var. sinensis
CSS0027460 Camellia sinensis var. sinensis
CSS0045700 Camellia sinensis var. sinensis
DCAR_008965 Daucus carota
DCAR_015550 Daucus carota
DCAR_018825 Daucus carota
DCAR_020353 Daucus carota
Dinv02488 Davidia involucrata
Dinv12927 Davidia involucrata
Dinv29234 Davidia involucrata
Dinv35368 Davidia involucrata
Duzib068G1200 Durio zibethinus
Duzib084G0627 Durio zibethinus
Duzib205G0825 Durio zibethinus
Duzib205G1153 Durio zibethinus
ECA238G4055 Erigeron canadensis
ECA246G4514 Erigeron canadensis
EL10Ac3g05214 Beta vulgaris
EL10Ac5g12432 Beta vulgaris
Eucgr.A01427 Eucalyptus grandis
Eucgr.E01037 Eucalyptus grandis
FAN01G0424 Fragaria x ananassa
FAN03G0298 Fragaria x ananassa
FAN04G0680 Fragaria x ananassa
FAN08G0788 Fragaria x ananassa
FAN10G1042 Fragaria x ananassa
FAN10G1583 Fragaria x ananassa
FAN13G0141 Fragaria x ananassa
FAN18G0843 Fragaria x ananassa
FvH4_5g10940 Fragaria vesca
FvH4_7g32540 Fragaria vesca
Glyma.04G231700 Glycine max
Glyma.06G133400 Glycine max
Glyma.14G159000 Glycine max
Gohir.A08G101725 Gossypium hirsutum
Gohir.A11G016000 Gossypium hirsutum
Gohir.A11G019000 Gossypium hirsutum
Gohir.A12G239900 Gossypium hirsutum
Gohir.D08G114200 Gossypium hirsutum
Gohir.D11G012900 Gossypium hirsutum
Gohir.D11G018700 Gossypium hirsutum
Gohir.D12G241100 Gossypium hirsutum
Gorai.004G123000 Gossypium raimondii
Gorai.007G016600 Gossypium raimondii
Gorai.007G020000 Gossypium raimondii
Gorai.008G258300 Gossypium raimondii
GSVIVG01019648001 Vitis vinifera
GSVIVG01038614001 Vitis vinifera
HanXRQChr06g0166791 Helianthus annuus
HanXRQChr07g0206381 Helianthus annuus
HanXRQChr17g0534711 Helianthus annuus
Haze_00269 Corylus avellana
Haze_09173 Corylus avellana
Hma1.2p1_0094F.1_g047120 Hydrangea macrophylla
Hma1.2p1_0096F.1_g047890 Hydrangea macrophylla
HPP92_001461 Vanilla planifolia
HPP92_008883 Vanilla planifolia
HPP92_012906 Vanilla planifolia
HPP92_012928 Vanilla planifolia
Hund09686 Selenicereus undatus
Hund21036 Selenicereus undatus
Lalb_Chr08g0239911 Lupinus albus
Lalb_Chr11g0067171 Lupinus albus
Lalb_Chr23g0271741 Lupinus albus
Lj1C1025T11 Lonicera japonica
Lj1g0003950 Lotus japonicus
Lj2A157T58 Lonicera japonica
Lj3C901T15 Lonicera japonica
Lj8C200T4 Lonicera japonica
Lsat_1_v5_gn_2_135100 Lactuca sativa
Lsat_1_v5_gn_3_14161 Lactuca sativa
Manes.01G038300 Manihot esculenta
Manes.01G051600 Manihot esculenta
Manes.05G193200 Manihot esculenta
Mapoly0046s0105 Marchantia polymorpha
MBI04_g33417_MAGBIO Magnolia biondii
MBI12_g13708_MAGBIO Magnolia biondii
MD01G1226100 Malus domestica
MD06G1118300 Malus domestica
MD07G1296600 Malus domestica
MD14G1126300 Malus domestica
MD14G1126400 Malus domestica
Medtr1g007590 Medicago truncatula
Medtr3g092100 Medicago truncatula
Medtr5g065510 Medicago truncatula
MELO3C005908.2 Cucumis melo
MELO3C019385.2 Cucumis melo
Migut.E00623 Erythranthe guttata
Migut.E00631 Erythranthe guttata
Migut.F00168 Erythranthe guttata
MSTRG.13715 Avicennia marina
MSTRG.26998 Avicennia marina
MSTRG.8537 Avicennia marina
MSTRG.8623 Avicennia marina
Nitab4.5_0000015g0150 Nicotiana tabacum
Nitab4.5_0000319g0360 Nicotiana tabacum
Nitab4.5_0002575g0050 Nicotiana tabacum
Nitab4.5_0006368g0020 Nicotiana tabacum
Nitab4.5_0013781g0010 Nicotiana tabacum
Nn1g00378 Nelumbo nucifera
Nn3g18805 Nelumbo nucifera
Oeu013385.1 Olea europaea
Oeu041374.1 Olea europaea
Oeu061015.4 Olea europaea
Os08g0547200 Oryza sativa ssp. japonica
Os09g0528800 Oryza sativa ssp. japonica
Os10g0518100 Oryza sativa ssp. japonica
Peaxi162Scf00618g00215 Petunia axillaris
Peaxi162Scf00740g00432 Petunia axillaris
PGR042G0318 Punica granatum
PGR042G2411 Punica granatum
PGSC0003DMG400005470 Solanum tuberosum
PGSC0003DMG400018512 Solanum tuberosum
Phvul.001G062700 Phaseolus vulgaris
Phvul.009G049000 Phaseolus vulgaris
Potri.001G084300 Populus trichocarpa
Potri.003G146300 Populus trichocarpa
Potri.012G024500 Populus trichocarpa
Potri.015G007400 Populus trichocarpa
Pp3c14_11420 Physcomitrium patens
Pp3c1_32810 Physcomitrium patens
PRCOL_00000337 Prasinoderma coloniale
Prupe.2G316200 Prunus persica
Prupe.5G129300 Prunus persica
Psat5g074160 Pisum sativum
Psat6g036640 Pisum sativum
PSO063G2927 Papaver somniferum
PSO135G0148 Papaver somniferum
PSO384G0575 Papaver somniferum
PSO782G4268 Papaver somniferum
QL02p028178 Quercus lobata
QL09p007533 Quercus lobata
RcHm_v2.0_Chr1g0382381 Rosa chinensis
RcHm_v2.0_Chr7g0186871 Rosa chinensis
Rhsim02G0251900 Rhododendron simsii
Rhsim03G0212800 Rhododendron simsii
Sabra03G0106500 Salix brachista
Sabra12G0006200 Salix brachista
Sabra12G0009600 Salix brachista
Sabra15G0005500 Salix brachista
SalBow1G6782 Salvia bowleyana
SalBow4G1262 Salvia bowleyana
Sc01g0010650 Simmondsia chinensis
Sc19g0000700 Simmondsia chinensis
Sc22g0004700 Simmondsia chinensis
Sed0000868 Sechium edule
Sed0005244 Sechium edule
Sed0009566 Sechium edule
Sed0020158 Sechium edule
SEGI_09447 Sequoiadendron giganteum
SEGI_24068 Sequoiadendron giganteum
SEGI_41133 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08450 Striga asiatica
SHI02328 Sapria himalayana
SHI06910 Sapria himalayana
SMO116G0238 Selaginella moellendorffii
Solyc03g082590.4 Solanum lycopersicum
Solyc06g053190.3 Solanum lycopersicum
Sopen03g022350 Solanum pennellii
Sopen06g018250 Solanum pennellii
Sp2g22940 Schrenkiella parvula
Sp5g12720 Schrenkiella parvula
Sp6g15710 Schrenkiella parvula
Sp7g00190 Schrenkiella parvula
TAR375G0670 Trochodendron aralioides
TAR629G0803 Trochodendron aralioides
TAR636G1024 Trochodendron aralioides
THA.LOC104803336 Tarenaya hassleriana
THA.LOC104809305 Tarenaya hassleriana
THA.LOC104825193 Tarenaya hassleriana
Thecc.03G205400 Theobroma cacao
Thecc.03G221400 Theobroma cacao
Thhalv10003978m.g Eutrema salsugineum
Thhalv10010270m.g Eutrema salsugineum
Thhalv10013153m.g Eutrema salsugineum
Thhalv10027703m.g Eutrema salsugineum
TPR.G24542 Trifolium pratense
TPR.G33615 Trifolium pratense
TWI14G0826 Tripterygium wilfordii
TWI15G0483 Tripterygium wilfordii
TWI39G0965 Tripterygium wilfordii
TWI60G0830 Tripterygium wilfordii
TWI81G0527 Tripterygium wilfordii
unitig_0.g2625 Utricularia gibba
unitig_0.g2626 Utricularia gibba
unitig_62.g23650 Utricularia gibba
unitig_744.g24424 Utricularia gibba
unitig_748.g7285 Utricularia gibba
vmacro06421 Vaccinium macrocarpon
vmacro11503 Vaccinium macrocarpon
VMungo0647G1243 Vigna mungo
VMungo1309G1014 Vigna mungo
Zm00001eb040250 Zea mays
Zm00001eb103300 Zea mays
Zm00001eb202610 Zea mays
Zm00001eb220120 Zea mays
Zm00001eb319110 Zea mays

User provided reference genes

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