Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p31260 Brassica napus
A03p43370 Brassica napus
A04p08190 Brassica napus
A07p08560 Brassica napus
A08p06520 Brassica napus
Aa31LG8G10390 Aethionema arabicum
Aa31LG9G3630 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2860 Anthoceros agrestis
Actinidia16203 Actinidia chinensis
Actinidia16204 Actinidia chinensis
Actinidia21261 Actinidia chinensis
Actinidia35839 Actinidia chinensis
Ah.04g149430 Amaranthus hybridus
Ah.13g077940 Amaranthus hybridus
AL3G38710 Arabidopsis lyrata
AL7G42570 Arabidopsis lyrata
Aqoxy2G03926 Aquilegia oxysepala
Aqoxy3G01357 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9SLV88 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L1AD9S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T3H8L6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U846X0 Arachis hypogaea
AT3G23810 Arabidopsis thaliana
AT4G13940 Arabidopsis thaliana
ATR0561G223 Amborella trichopoda
Atru.chr4.1575 Acer truncatum
AUR62018554 Chenopodium quinoa
AUR62020865 Chenopodium quinoa
BcaB02g08643 Brassica carinata
BcaB04g17636 Brassica carinata
BcaB04g20420 Brassica carinata
BcaB06g26543 Brassica carinata
BcaC01g03364 Brassica carinata
BcaC02g09378 Brassica carinata
BcaC06g35574 Brassica carinata
BcaC07g37317 Brassica carinata
BolC1t03934H Brassica oleracea
BolC3t17590H Brassica oleracea
BolC4t25781H Brassica oleracea
BolC7t41832H Brassica oleracea
BolC8t47600H Brassica oleracea
BraA01t03250Z Brassica rapa
BraA03t13475Z Brassica rapa
BraA04t16510Z Brassica rapa
BraA07t28645Z Brassica rapa
BraA08t32665Z Brassica rapa
C01p39830 Brassica napus
C01p50570 Brassica napus
C03p53290 Brassica napus
C04p41910 Brassica napus
C06p07910 Brassica napus
C07p13370 Brassica napus
C08p07560 Brassica napus
CAN.G1155.36 Capsicum annuum
CAN.G1155.37 Capsicum annuum
CAN.G1377.2 Capsicum annuum
CAN.G1565.24 Capsicum annuum
CAN.G1565.25 Capsicum annuum
CAN.G201.8 Capsicum annuum
CAN.G353.6 Capsicum annuum
CAN.G767.14 Capsicum annuum
CAN.G767.15 Capsicum annuum
CANSAT78G2025 Cannabis sativa
CARHR099810 Cardamine hirsuta
CARHR219830 Cardamine hirsuta
Carub.0003s2412 Capsella rubella
Carub.0007s2853 Capsella rubella
Ca_16409_v3 Cicer arietinum L.
Ca_16418_v3 Cicer arietinum L.
Ca_17985_v3 Cicer arietinum L.
CBR_g11063 Chara braunii
CBR_g32317 Chara braunii
CBR_g48580 Chara braunii
CBR_g6529 Chara braunii
Cc03_g08490 Coffea canephora
Cc04_g10710 Coffea canephora
CDE02G0046 Ceratophyllum demersum
CDE02G1295 Ceratophyllum demersum
CDE02G3350 Ceratophyllum demersum
CDE02G4145 Ceratophyllum demersum
CDE03G0470 Ceratophyllum demersum
CDE06G0917 Ceratophyllum demersum
CDE09G1358 Ceratophyllum demersum
CDE12G0566 Ceratophyllum demersum
Cfa014963 Carpinus fangiana
Cfa026536 Carpinus fangiana
Ciclev10004852m.g Citrus clementina
Ciclev10010493m.g Citrus clementina
Ciclev10023569m.g Citrus clementina
Ciclev10030363m.g Citrus clementina
CiPaw.01G116600 Carya illinoinensis
CiPaw.02G064300 Carya illinoinensis
ClCG05G003090 Citrullus lanatus
ClCG06G007930 Citrullus lanatus
COL.COLO4_13767 Corchorus olitorius
COL.COLO4_16023 Corchorus olitorius
Cpa.g.sc157.46 Carica papaya
Cpa.g.sc83.10 Carica papaya
Cpa.g.sc83.6 Carica papaya
Cpa.g.sc83.7 Carica papaya
Cre03.g204250 Chlamydomonas reinhardtii
CsaV3_2G011670 Cucumis sativus L.
CsaV3_3G010720 Cucumis sativus L.
CSS0009676 Camellia sinensis var. sinensis
CSS0010641 Camellia sinensis var. sinensis
CSS0020289 Camellia sinensis var. sinensis
CSS0031075 Camellia sinensis var. sinensis
CSS0033871 Camellia sinensis var. sinensis
CSS0038197 Camellia sinensis var. sinensis
DCAR_005912 Daucus carota
DCAR_005914 Daucus carota
DCAR_015889 Daucus carota
DCAR_024107 Daucus carota
DCAR_026653 Daucus carota
Dinv08664 Davidia involucrata
Dinv20571 Davidia involucrata
Dinv27198 Davidia involucrata
Dinv38166 Davidia involucrata
Dinv38490 Davidia involucrata
Dinv40393 Davidia involucrata
Duzib151G0527 Durio zibethinus
Duzib205G1878 Durio zibethinus
Duzib212G0579 Durio zibethinus
Duzib212G0767 Durio zibethinus
Duzib268G1695 Durio zibethinus
ECA233G1467 Erigeron canadensis
ECA238G0543 Erigeron canadensis
ECA248G2204 Erigeron canadensis
EL10Ac3g07452 Beta vulgaris
Eucgr.D00281 Eucalyptus grandis
Eucgr.H02678 Eucalyptus grandis
Eucgr.H03173 Eucalyptus grandis
Eucgr.H03174 Eucalyptus grandis
Eucgr.H03176 Eucalyptus grandis
Eucgr.H03177 Eucalyptus grandis
Eucgr.H03180 Eucalyptus grandis
FAN07G0492 Fragaria x ananassa
FAN11G1430 Fragaria x ananassa
FAN12G3895 Fragaria x ananassa
FAN17G1886 Fragaria x ananassa
FAN22G2394 Fragaria x ananassa
FvH4_4g13280 Fragaria vesca
Glyma.05G152000 Glycine max
Glyma.08G108800 Glycine max
Glyma.11G254700 Glycine max
Gohir.A02G019000 Gossypium hirsutum
Gohir.A03G063300 Gossypium hirsutum
Gohir.A09G206600 Gossypium hirsutum
Gohir.A10G127200 Gossypium hirsutum
Gohir.D02G022300 Gossypium hirsutum
Gohir.D03G103000 Gossypium hirsutum
Gohir.D09G200200 Gossypium hirsutum
Gohir.D10G138700 Gossypium hirsutum
Gorai.003G108500 Gossypium raimondii
Gorai.005G027700 Gossypium raimondii
Gorai.006G223900 Gossypium raimondii
Gorai.011G154000 Gossypium raimondii
GSVIVG01007578001 Vitis vinifera
GSVIVG01021041001 Vitis vinifera
HanXRQChr01g0022151 Helianthus annuus
HanXRQChr07g0185591 Helianthus annuus
HanXRQChr15g0485791 Helianthus annuus
Haze_11655 Corylus avellana
Haze_26514 Corylus avellana
Haze_27309 Corylus avellana
Hma1.2p1_0014F.1_g009920 Hydrangea macrophylla
Hma1.2p1_0349F.1_g132080 Hydrangea macrophylla
Hma1.2p1_1286F.1_g273080 Hydrangea macrophylla
HPP92_003547 Vanilla planifolia
HPP92_008212 Vanilla planifolia
HPP92_024211 Vanilla planifolia
Hund19011 Selenicereus undatus
Hund24423 Selenicereus undatus
Lalb_Chr08g0230461 Lupinus albus
Lalb_Chr12g0205641 Lupinus albus
Lalb_Chr13g0294811 Lupinus albus
Lalb_Chr13g0294821 Lupinus albus
Lalb_Chr23g0278301 Lupinus albus
Lj4g0004092 Lotus japonicus
Lj6A380T29 Lonicera japonica
Lj6C380G5 Lonicera japonica
Lj6g0016083 Lotus japonicus
Lj9A473T56 Lonicera japonica
Lju912A1T32 Lonicera japonica
Lsat_1_v5_gn_1_70780 Lactuca sativa
Lsat_1_v5_gn_2_47620 Lactuca sativa
Lsat_1_v5_gn_6_59101 Lactuca sativa
Manes.03G143900 Manihot esculenta
Manes.15G057000 Manihot esculenta
Mapoly0069s0006 Marchantia polymorpha
MBI02_g44627_MAGBIO Magnolia biondii
MBI06_g27725_MAGBIO Magnolia biondii
MBI07_g24020_MAGBIO Magnolia biondii
MBI08_g29407_MAGBIO Magnolia biondii
MBI11_g07404_MAGBIO Magnolia biondii
MCO10G068 Micromonas commoda
MD05G1230000 Malus domestica
MD05G1230100 Malus domestica
MD13G1281900 Malus domestica
Medtr3g084340 Medicago truncatula
Medtr8g083090 Medicago truncatula
MELO3C006291.2 Cucumis melo
MELO3C020432.2 Cucumis melo
Migut.G00773 Erythranthe guttata
Migut.G00774 Erythranthe guttata
Migut.N00421 Erythranthe guttata
MSTRG.4247 Avicennia marina
MSTRG.4248 Avicennia marina
MSTRG.9794 Avicennia marina
Nitab4.5_0000697g0210 Nicotiana tabacum
Nitab4.5_0001360g0190 Nicotiana tabacum
Nitab4.5_0002260g0040 Nicotiana tabacum
Nitab4.5_0019528g0010 Nicotiana tabacum
Nn1g08165 Nelumbo nucifera
Nn2g10505 Nelumbo nucifera
Nn4g25631 Nelumbo nucifera
Oeu002928.1 Olea europaea
Oeu035839.1 Olea europaea
Oeu043436.1 Olea europaea
Oeu044603.1 Olea europaea
Oeu056424.3 Olea europaea
Os11g0455500 Oryza sativa ssp. japonica
Peaxi162Scf00047g00011 Petunia axillaris
Peaxi162Scf00089g00930 Petunia axillaris
Peaxi162Scf00423g00057 Petunia axillaris
Peaxi162Scf00652g00015 Petunia axillaris
PGR142G0604 Punica granatum
PGSC0003DMG400004572 Solanum tuberosum
Phvul.001G266500 Phaseolus vulgaris
Phvul.003G051200 Phaseolus vulgaris
Potri.001G320500 Populus trichocarpa
Potri.017G059400 Populus trichocarpa
Pp3c19_13650 Physcomitrium patens
Pp3c19_13710 Physcomitrium patens
Pp3c19_13810 Physcomitrium patens
Pp3c19_14520 Physcomitrium patens
Pp3c19_14590 Physcomitrium patens
PRCOL_00006293 Prasinoderma coloniale
Prupe.1G165200 Prunus persica
Psat1g115560 Pisum sativum
Psat4g060200 Pisum sativum
Psat5g099920 Pisum sativum
Psat7g075480 Pisum sativum
PSO017G1481 Papaver somniferum
PSO063G3140 Papaver somniferum
PSO063G6269 Papaver somniferum
PSO782G3253 Papaver somniferum
QL04p053918 Quercus lobata
QL10p005679 Quercus lobata
QL10p005684 Quercus lobata
QL10p041121 Quercus lobata
RcHm_v2.0_Chr4g0413571 Rosa chinensis
Rhsim02G0062100 Rhododendron simsii
Rhsim08G0182700 Rhododendron simsii
Rhsim08G0182800 Rhododendron simsii
Sabra16G0203100 Salix brachista
Sabra17G0053000 Salix brachista
SalBow3G0259 Salvia bowleyana
SalBow8G4034 Salvia bowleyana
Sc13g0000440 Simmondsia chinensis
Sc19g0007380 Simmondsia chinensis
Sed0010255 Sechium edule
Sed0012181 Sechium edule
Sed0015472 Sechium edule
Sed0020775 Sechium edule
Sed0025857 Sechium edule
SEGI_01156 Sequoiadendron giganteum
SEGI_02067 Sequoiadendron giganteum
SEGI_07239 Sequoiadendron giganteum
SEGI_12597 Sequoiadendron giganteum
SEGI_17057 Sequoiadendron giganteum
SEGI_27404 Sequoiadendron giganteum
SEGI_27892 Sequoiadendron giganteum
SEGI_32130 Sequoiadendron giganteum
SEGI_34472 Sequoiadendron giganteum
SGA_v2.0_scaffold102G29900 Striga asiatica
SGA_v2.0_scaffold19G08789 Striga asiatica
SGA_v2.0_scaffold270G46302 Striga asiatica
SHI23719 Sapria himalayana
SMO337G0106 Selaginella moellendorffii
Solyc05g032820.3 Solanum lycopersicum
Solyc09g092380.3 Solanum lycopersicum
Solyc09g092390.2 Solanum lycopersicum
Solyc12g098500.2 Solanum lycopersicum
Sopen05g023860 Solanum pennellii
Sopen09g035280 Solanum pennellii
Sopen09g035290 Solanum pennellii
Sopen12g033280 Solanum pennellii
Sp3g21520 Schrenkiella parvula
Sp7g11740 Schrenkiella parvula
TAR362G0620 Trochodendron aralioides
TAR374G0568 Trochodendron aralioides
TAR374G1513 Trochodendron aralioides
TAR633G2573 Trochodendron aralioides
THA.LOC104804797 Tarenaya hassleriana
THA.LOC104808692 Tarenaya hassleriana
THA.LOC104822224 Tarenaya hassleriana
Thecc.03G120100 Theobroma cacao
Thecc.04G194700 Theobroma cacao
Thhalv10002505m.g Eutrema salsugineum
Thhalv10024750m.g Eutrema salsugineum
TPR.G11821 Trifolium pratense
TPR.G25381 Trifolium pratense
TWI14G0090 Tripterygium wilfordii
TWI59G0694 Tripterygium wilfordii
TWI73G0486 Tripterygium wilfordii
TWI73G0947 Tripterygium wilfordii
unitig_899.g14641 Utricularia gibba
vmacro15568 Vaccinium macrocarpon
vmacro19258 Vaccinium macrocarpon
VMungo0540G1364 Vigna mungo
VMungo1383G0844 Vigna mungo
Zm00001eb090450 Zea mays
Zm00001eb170040 Zea mays

User provided reference genes

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