Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p05100 Brassica napus
A09p47650 Brassica napus
A10p19980 Brassica napus
A10p19990 Brassica napus
Aa31sc392G10 Aethionema arabicum
Actinidia03957 Actinidia chinensis
Actinidia17516 Actinidia chinensis
Actinidia17517 Actinidia chinensis
Actinidia26606 Actinidia chinensis
Actinidia26607 Actinidia chinensis
Actinidia32647 Actinidia chinensis
Actinidia37783 Actinidia chinensis
Actinidia39778 Actinidia chinensis
Ah.02g127290 Amaranthus hybridus
AL5G35800 Arabidopsis lyrata
AL6G31260 Arabidopsis lyrata
Aqoxy1G00573 Aquilegia oxysepala
Aqoxy7G01386 Aquilegia oxysepala
Aqoxy7G04127 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.77RLVP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.828D94 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JXA1U4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N9VJFB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NGJ5WT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NSGB9G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R5ZN5G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SS6DX1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UAR69D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W2NK5T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W9K7LW Arachis hypogaea
AT3G54720 Arabidopsis thaliana
AT4G07670 Arabidopsis thaliana
AT5G19740 Arabidopsis thaliana
ATR0697G073 Amborella trichopoda
ATR0705G099 Amborella trichopoda
ATR0705G108 Amborella trichopoda
Atru.chr7.1476 Acer truncatum
Atru.chr8.1252 Acer truncatum
AUR62002957 Chenopodium quinoa
AUR62007762 Chenopodium quinoa
BcaB01g00165 Brassica carinata
BcaB02g08454 Brassica carinata
BcaB02g08456 Brassica carinata
BcaB05g23030 Brassica carinata
BcaB08g36570 Brassica carinata
BcaC02g09047 Brassica carinata
BcaC02g09699 Brassica carinata
BcaC03g13704 Brassica carinata
BcaC03g13706 Brassica carinata
BcaC03g18004 Brassica carinata
BcaC04g19372 Brassica carinata
BcaC07g39792 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p02160 Brassica napus
BolC2t12113H Brassica oleracea
BolC2t12114H Brassica oleracea
BolC4t25325H Brassica oleracea
BolC4t25355H Brassica oleracea
BolC6t37623H Brassica oleracea
BolC8t50597H Brassica oleracea
BolC9t58510H Brassica oleracea
BraA04t16221Z Brassica rapa
BraA09t40221Z Brassica rapa
BraA10t44073Z Brassica rapa
C02p60630 Brassica napus
C04p37600 Brassica napus
C04p37790 Brassica napus
C06p24680 Brassica napus
C08p29860 Brassica napus
C09p56420 Brassica napus
CAN.G13.11 Capsicum annuum
CAN.G1349.14 Capsicum annuum
CAN.G1357.31 Capsicum annuum
CAN.G1618.18 Capsicum annuum
CAN.G1677.10 Capsicum annuum
CAN.G1677.11 Capsicum annuum
CAN.G694.1 Capsicum annuum
CAN.G943.1 Capsicum annuum
CANSAT56G2830 Cannabis sativa
CANSAT56G4408 Cannabis sativa
CANSAT64G2053 Cannabis sativa
CARHR164640 Cardamine hirsuta
CARHR164650 Cardamine hirsuta
CARHR193160 Cardamine hirsuta
Carub.0005s2132 Capsella rubella
Carub.0006s1809 Capsella rubella
Ca_06150_v3 Cicer arietinum L.
Ca_09091_v3 Cicer arietinum L.
CBR_g52181 Chara braunii
Cc06_g07060 Coffea canephora
Cc06_g10580 Coffea canephora
CDE10G0282 Ceratophyllum demersum
CDE10G0473 Ceratophyllum demersum
CDE10G0810 Ceratophyllum demersum
CDE10G1229 Ceratophyllum demersum
Cfa003166 Carpinus fangiana
Cfa020100 Carpinus fangiana
Cfa022818 Carpinus fangiana
Cfa026058 Carpinus fangiana
Ciclev10007621m.g Citrus clementina
Ciclev10011190m.g Citrus clementina
CiPaw.04G155600 Carya illinoinensis
CiPaw.09G025000 Carya illinoinensis
CiPaw.10G022000 Carya illinoinensis
ClCG10G017890 Citrullus lanatus
COL.COLO4_29464 Corchorus olitorius
COL.COLO4_34729 Corchorus olitorius
Cpa.g.c39329 Carica papaya
Cpa.g.sc222.2 Carica papaya
CsaV3_3G038400 Cucumis sativus L.
CSS0001789 Camellia sinensis var. sinensis
CSS0006001 Camellia sinensis var. sinensis
CSS0027659 Camellia sinensis var. sinensis
DCAR_012033 Daucus carota
DCAR_012036 Daucus carota
DCAR_013467 Daucus carota
Dinv11910 Davidia involucrata
Dinv42255 Davidia involucrata
Duzib093G1344 Durio zibethinus
Duzib106G0200 Durio zibethinus
Duzib168G0173 Durio zibethinus
Duzib187G0032 Durio zibethinus
ECA238G4566 Erigeron canadensis
ECA240G3218 Erigeron canadensis
ECA240G3634 Erigeron canadensis
ECA240G4793 Erigeron canadensis
EL10Ac3g06276 Beta vulgaris
Eucgr.C03720 Eucalyptus grandis
Eucgr.K01904 Eucalyptus grandis
FAN02G0379 Fragaria x ananassa
FAN02G2700 Fragaria x ananassa
FAN02G3045 Fragaria x ananassa
FAN05G0300 Fragaria x ananassa
FAN05G1287 Fragaria x ananassa
FAN05G1646 Fragaria x ananassa
FAN09G3138 Fragaria x ananassa
FAN14G0226 Fragaria x ananassa
FAN14G3679 Fragaria x ananassa
FAN19G0837 Fragaria x ananassa
FAN26G1227 Fragaria x ananassa
FAN26G2820 Fragaria x ananassa
FAN28G2140 Fragaria x ananassa
FvH4_1g06360 Fragaria vesca
FvH4_6g21160 Fragaria vesca
FvH4_6g31420 Fragaria vesca
Glyma.01G006700 Glycine max
Glyma.03G205900 Glycine max
Glyma.10G088000 Glycine max
Glyma.16G102200 Glycine max
Glyma.17G079500 Glycine max
Glyma.19G203400 Glycine max
Gohir.A06G067800 Gossypium hirsutum
Gohir.A07G087800 Gossypium hirsutum
Gohir.D06G066400 Gossypium hirsutum
Gohir.D07G092700 Gossypium hirsutum
Gorai.001G099300 Gossypium raimondii
Gorai.010G077900 Gossypium raimondii
GSVIVG01005700001 Vitis vinifera
GSVIVG01005992001 Vitis vinifera
GSVIVG01006056001 Vitis vinifera
GSVIVG01006347001 Vitis vinifera
GSVIVG01015288001 Vitis vinifera
GSVIVG01022505001 Vitis vinifera
GSVIVG01026664001 Vitis vinifera
HanXRQChr01g0020701 Helianthus annuus
HanXRQChr03g0061051 Helianthus annuus
HanXRQChr07g0197011 Helianthus annuus
HanXRQChr08g0215651 Helianthus annuus
HanXRQChr11g0320481 Helianthus annuus
HanXRQChr15g0482101 Helianthus annuus
Haze_20091 Corylus avellana
Haze_25833 Corylus avellana
HPP92_007686 Vanilla planifolia
HPP92_018635 Vanilla planifolia
HPP92_022964 Vanilla planifolia
HPP92_022965 Vanilla planifolia
HPP92_022966 Vanilla planifolia
Hund09746 Selenicereus undatus
Hund15033 Selenicereus undatus
Lalb_Chr20g0111161 Lupinus albus
Lj1C1060G1 Lonicera japonica
Lj1g0018014 Lotus japonicus
Lj2g0007985 Lotus japonicus
Lj2g0016602 Lotus japonicus
Lj2g0019532 Lotus japonicus
Lj7A663T54 Lonicera japonica
Lj7C666T8 Lonicera japonica
Lsat_1_v5_gn_2_102120 Lactuca sativa
Lsat_1_v5_gn_7_39601 Lactuca sativa
Manes.03G027700 Manihot esculenta
Manes.08G038300 Manihot esculenta
Mapoly0059s0084 Marchantia polymorpha
MBI01_g26922_MAGBIO Magnolia biondii
MD02G1067100 Malus domestica
MD02G1067200 Malus domestica
MD12G1047100 Malus domestica
MD14G1046000 Malus domestica
MD15G1197700 Malus domestica
Medtr6g088825 Medicago truncatula
Medtr6g088830 Medicago truncatula
Medtr7g106610 Medicago truncatula
Medtr7g107100 Medicago truncatula
MELO3C009584.2 Cucumis melo
Migut.J01091 Erythranthe guttata
Migut.L00681 Erythranthe guttata
Migut.L00845 Erythranthe guttata
Migut.L01857 Erythranthe guttata
MSTRG.26569 Avicennia marina
MSTRG.6024 Avicennia marina
Nitab4.5_0000117g0080 Nicotiana tabacum
Nitab4.5_0000566g0180 Nicotiana tabacum
Nitab4.5_0003079g0050 Nicotiana tabacum
Nitab4.5_0005508g0010 Nicotiana tabacum
Nn6g32464 Nelumbo nucifera
Nn8g39047 Nelumbo nucifera
Oeu018579.1 Olea europaea
Oeu063092.1 Olea europaea
Os01g0740500 Oryza sativa ssp. japonica
Os01g0740600 Oryza sativa ssp. japonica
Os01g0740650 Oryza sativa ssp. japonica
Os01g0743300 Oryza sativa ssp. japonica
Os03g0790600 Oryza sativa ssp. japonica
Peaxi162Scf00210g00008 Petunia axillaris
Peaxi162Scf00810g00008 Petunia axillaris
Peaxi162Scf00944g00023 Petunia axillaris
Peaxi162Scf00944g00031 Petunia axillaris
Peaxi162Scf15704g00001 Petunia axillaris
Peaxi162Scf59644g00001 Petunia axillaris
PGR102G0653 Punica granatum
PGR142G2179 Punica granatum
PGSC0003DMG400000356 Solanum tuberosum
Phvul.001G199600 Phaseolus vulgaris
Phvul.007G264800 Phaseolus vulgaris
Potri.006G153300 Populus trichocarpa
Potri.016G064300 Populus trichocarpa
Pp3c24_6510 Physcomitrium patens
Pp3c24_6511 Physcomitrium patens
Pp3c8_14530 Physcomitrium patens
Pp3c8_14531 Physcomitrium patens
Prupe.7G088100 Prunus persica
Prupe.7G218300 Prunus persica
Psat1g048000 Pisum sativum
Psat3g026520 Pisum sativum
PSO135G0464 Papaver somniferum
PSO339G3556 Papaver somniferum
PSO384G1233 Papaver somniferum
PSO832G0427 Papaver somniferum
QL02p040919 Quercus lobata
QL07p025891 Quercus lobata
RcHm_v2.0_Chr2g0092051 Rosa chinensis
RcHm_v2.0_Chr3g0477621 Rosa chinensis
RcHm_v2.0_Chr5g0038921 Rosa chinensis
Rhsim03G0057700 Rhododendron simsii
Rhsim03G0236300 Rhododendron simsii
Rhsim05G0039000 Rhododendron simsii
Sabra06G0121400 Salix brachista
Sabra06G0152500 Salix brachista
SalBow6G1385 Salvia bowleyana
Sc22g0003020 Simmondsia chinensis
Sed0000029 Sechium edule
Sed0020520 Sechium edule
Sed0022385 Sechium edule
SEGI_02146 Sequoiadendron giganteum
SEGI_06765 Sequoiadendron giganteum
SEGI_24441 Sequoiadendron giganteum
SEGI_32278 Sequoiadendron giganteum
SEGI_32561 Sequoiadendron giganteum
SEGI_32772 Sequoiadendron giganteum
SEGI_33143 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05168 Striga asiatica
SGA_v2.0_scaffold392G50671 Striga asiatica
SGA_v2.0_scaffold427G51515 Striga asiatica
SGA_v2.0_scaffold42G15942 Striga asiatica
SHI31765 Sapria himalayana
SMO236G0049 Selaginella moellendorffii
SMO343G0083 Selaginella moellendorffii
SMO343G0097 Selaginella moellendorffii
SMO343G0140 Selaginella moellendorffii
SMO356G0736 Selaginella moellendorffii
SMO367G0044 Selaginella moellendorffii
SMO367G0205 Selaginella moellendorffii
SMO367G0865 Selaginella moellendorffii
Solyc11g045250.1 Solanum lycopersicum
Solyc12g008540.2 Solanum lycopersicum
Solyc12g008550.3 Solanum lycopersicum
Sopen11g020710 Solanum pennellii
Sopen12g003490 Solanum pennellii
Sp1g29950 Schrenkiella parvula
Sp4g06590 Schrenkiella parvula
Sp5g07730 Schrenkiella parvula
Sp5g13680 Schrenkiella parvula
Sp6g24650 Schrenkiella parvula
TAR624G0944 Trochodendron aralioides
TAR633G0184 Trochodendron aralioides
THA.LOC104811076 Tarenaya hassleriana
THA.LOC104825265 Tarenaya hassleriana
Thecc.05G182300 Theobroma cacao
Thecc.09G099200 Theobroma cacao
Thhalv10010161m.g Eutrema salsugineum
Thhalv10012881m.g Eutrema salsugineum
TPR.G14416 Trifolium pratense
TWI34G0559 Tripterygium wilfordii
TWI77G0852 Tripterygium wilfordii
unitig_27.g24899 Utricularia gibba
unitig_85.g27222 Utricularia gibba
vmacro06256 Vaccinium macrocarpon
vmacro07520 Vaccinium macrocarpon
vmacro07527 Vaccinium macrocarpon
VMungo0251G1938 Vigna mungo
VMungo0331G1671 Vigna mungo
VMungo0464G2052 Vigna mungo
VMungo0720G0731 Vigna mungo
VMungo1383G0155 Vigna mungo
Zm00001eb060200 Zea mays
Zm00001eb153710 Zea mays
Zm00001eb153730 Zea mays
Zm00001eb371150 Zea mays

User provided reference genes

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