Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p36260 Brassica napus
A04p12390 Brassica napus
A04p15610 Brassica napus
A07p20070 Brassica napus
A09p03890 Brassica napus
Aa31LG2G4190 Aethionema arabicum
Aa31LG9G16440 Aethionema arabicum
Actinidia12291 Actinidia chinensis
Actinidia17555 Actinidia chinensis
Actinidia19036 Actinidia chinensis
Actinidia26225 Actinidia chinensis
Actinidia35004 Actinidia chinensis
Actinidia38783 Actinidia chinensis
Ah.02g129610 Amaranthus hybridus
Ah.03g134920 Amaranthus hybridus
AL5G18860 Arabidopsis lyrata
AL7G50640 Arabidopsis lyrata
Aqoxy3G03427 Aquilegia oxysepala
AT3G29000 Arabidopsis thaliana
AT5G39670 Arabidopsis thaliana
ATR0068G038 Amborella trichopoda
ATR0564G478 Amborella trichopoda
Atru.chr11.1768 Acer truncatum
Atru.chr8.189 Acer truncatum
AUR62005810 Chenopodium quinoa
AUR62032800 Chenopodium quinoa
AUR62034428 Chenopodium quinoa
AUR62039789 Chenopodium quinoa
AUR62039790 Chenopodium quinoa
AUR62039791 Chenopodium quinoa
BcaB02g07973 Brassica carinata
BcaB04g19494 Brassica carinata
BcaB06g27358 Brassica carinata
BcaC02g08844 Brassica carinata
BcaC04g23853 Brassica carinata
BcaC08g44426 Brassica carinata
BolC4t26192H Brassica oleracea
BolC4t26580H Brassica oleracea
BolC6t37076H Brassica oleracea
BolC9t53342H Brassica oleracea
BraA02t08625Z Brassica rapa
BraA04t16902Z Brassica rapa
BraA04t17196Z Brassica rapa
BraA07t29706Z Brassica rapa
BraA09t36026Z Brassica rapa
C04p46070 Brassica napus
C04p49890 Brassica napus
C06p18630 Brassica napus
C09p04120 Brassica napus
CAN.G1103.11 Capsicum annuum
CAN.G206.162 Capsicum annuum
CANSAT64G0045 Cannabis sativa
CANSAT80G2282 Cannabis sativa
CARHR152090 Cardamine hirsuta
CARHR262620 Cardamine hirsuta
Carub.0005s0759 Capsella rubella
Carub.0007s3628 Capsella rubella
Ca_02904_v3 Cicer arietinum L.
Ca_18827_v3 Cicer arietinum L.
Ca_21248_v3 Cicer arietinum L.
Ca_30086_v3 Cicer arietinum L.
Cc04_g16480 Coffea canephora
Cc07_g03480 Coffea canephora
Cc11_g12860 Coffea canephora
CDE02G3745 Ceratophyllum demersum
Cfa007573 Carpinus fangiana
Cfa018931 Carpinus fangiana
Ciclev10012752m.g Citrus clementina
Ciclev10022426m.g Citrus clementina
Ciclev10024475m.g Citrus clementina
CiPaw.04G016200 Carya illinoinensis
CiPaw.05G133300 Carya illinoinensis
CiPaw.11G045700 Carya illinoinensis
CiPaw.12G012900 Carya illinoinensis
ClCG04G012200 Citrullus lanatus
ClCG09G018130 Citrullus lanatus
ClCG10G015230 Citrullus lanatus
COL.COLO4_22951 Corchorus olitorius
COL.COLO4_36694 Corchorus olitorius
Cpa.g.sc111.15 Carica papaya
Cpa.g.sc14.95 Carica papaya
CsaV3_1G005550 Cucumis sativus L.
CsaV3_3G041300 Cucumis sativus L.
CsaV3_5G038130 Cucumis sativus L.
CSS0005295 Camellia sinensis var. sinensis
CSS0013301 Camellia sinensis var. sinensis
CSS0029813 Camellia sinensis var. sinensis
CSS0037782 Camellia sinensis var. sinensis
CSS0038574 Camellia sinensis var. sinensis
DCAR_005558 Daucus carota
DCAR_011089 Daucus carota
DCAR_016566 Daucus carota
Dinv11518 Davidia involucrata
Dinv16659 Davidia involucrata
Dinv30906 Davidia involucrata
Dinv33764 Davidia involucrata
Dinv34141 Davidia involucrata
Dinv38723 Davidia involucrata
Duzib084G0513 Durio zibethinus
Duzib187G0664 Durio zibethinus
Duzib205G1175 Durio zibethinus
Duzib264G1091 Durio zibethinus
ECA232G4148 Erigeron canadensis
ECA238G2832 Erigeron canadensis
ECA246G0146 Erigeron canadensis
EL10Ac2g02996 Beta vulgaris
EL10Ac6g13224 Beta vulgaris
Eucgr.B00519 Eucalyptus grandis
Eucgr.J01357 Eucalyptus grandis
Eucgr.K02482 Eucalyptus grandis
Eucgr.K02484 Eucalyptus grandis
Eucgr.K02486 Eucalyptus grandis
FAN02G0855 Fragaria x ananassa
FAN05G0674 Fragaria x ananassa
FAN05G5651 Fragaria x ananassa
FAN07G1656 Fragaria x ananassa
FAN08G2822 Fragaria x ananassa
FAN09G2398 Fragaria x ananassa
FAN12G0510 Fragaria x ananassa
FAN13G1730 Fragaria x ananassa
FAN14G4105 Fragaria x ananassa
FAN17G0930 Fragaria x ananassa
FAN18G3479 Fragaria x ananassa
FAN22G1363 Fragaria x ananassa
FvH4_4g31200 Fragaria vesca
FvH4_5g14810 Fragaria vesca
FvH4_6g48240 Fragaria vesca
Glyma.01G049500 Glycine max
Glyma.02G108700 Glycine max
Glyma.07G229500 Glycine max
Glyma.09G236800 Glycine max
Glyma.14G170400 Glycine max
Glyma.18G260700 Glycine max
Glyma.20G034200 Glycine max
Gohir.A04G147000 Gossypium hirsutum
Gohir.A05G366900 Gossypium hirsutum
Gohir.A05G367400 Gossypium hirsutum
Gohir.A09G014700 Gossypium hirsutum
Gohir.A11G070400 Gossypium hirsutum
Gohir.A12G178250 Gossypium hirsutum
Gohir.D04G047800 Gossypium hirsutum
Gohir.D04G048200 Gossypium hirsutum
Gohir.D04G191400 Gossypium hirsutum
Gohir.D09G013301 Gossypium hirsutum
Gohir.D11G074300 Gossypium hirsutum
Gohir.D12G180650 Gossypium hirsutum
Gorai.006G015300 Gossypium raimondii
Gorai.007G079700 Gossypium raimondii
Gorai.008G193900 Gossypium raimondii
Gorai.012G053200 Gossypium raimondii
Gorai.012G053700 Gossypium raimondii
Gorai.012G186800 Gossypium raimondii
GSVIVG01011435001 Vitis vinifera
HanXRQChr02g0043151 Helianthus annuus
HanXRQChr07g0199331 Helianthus annuus
HanXRQChr08g0210851 Helianthus annuus
HanXRQChr09g0270641 Helianthus annuus
HanXRQChr12g0362211 Helianthus annuus
HanXRQChr14g0449811 Helianthus annuus
HanXRQChr15g0473221 Helianthus annuus
HanXRQChr16g0503101 Helianthus annuus
HanXRQChr17g0546001 Helianthus annuus
Haze_07315 Corylus avellana
Haze_14513 Corylus avellana
Hma1.2p1_0409F.1_g146870 Hydrangea macrophylla
Hma1.2p1_0795F.1_g218960 Hydrangea macrophylla
Hma1.2p1_1936F.1_g308260 Hydrangea macrophylla
Hma1.2p1_2779F.1_g328300 Hydrangea macrophylla
HPP92_004332 Vanilla planifolia
HPP92_011251 Vanilla planifolia
HPP92_016259 Vanilla planifolia
Lalb_Chr05g0220321 Lupinus albus
Lalb_Chr09g0329251 Lupinus albus
Lalb_Chr10g0098301 Lupinus albus
Lj1g0002339 Lotus japonicus
Lj1g0003523 Lotus japonicus
Lj1g0018487 Lotus japonicus
Lj3P1036T18 Lonicera japonica
Lj4P111T48 Lonicera japonica
Lj5C110T20 Lonicera japonica
Lju41C10T7 Lonicera japonica
Lsat_1_v5_gn_1_14060 Lactuca sativa
Lsat_1_v5_gn_1_14080 Lactuca sativa
Lsat_1_v5_gn_2_87480 Lactuca sativa
Lsat_1_v5_gn_3_99041 Lactuca sativa
Lsat_1_v5_gn_4_109401 Lactuca sativa
Lsat_1_v5_gn_8_51200 Lactuca sativa
Manes.01G034900 Manihot esculenta
Manes.01G092300 Manihot esculenta
Manes.02G047200 Manihot esculenta
Manes.05G103201 Manihot esculenta
Manes.14G079500 Manihot esculenta
MBI05_g10775_MAGBIO Magnolia biondii
MBI13_g19195_MAGBIO Magnolia biondii
MBI19_g16212_MAGBIO Magnolia biondii
MD00G1125300 Malus domestica
MD06G1194700 Malus domestica
MD09G1052700 Malus domestica
MD13G1070500 Malus domestica
MD14G1201700 Malus domestica
Medtr2g023310 Medicago truncatula
Medtr4g082050 Medicago truncatula
Medtr4g127560 Medicago truncatula
Medtr5g025690 Medicago truncatula
Medtr7g011010 Medicago truncatula
MELO3C001988.2 Cucumis melo
MELO3C009858.2 Cucumis melo
MELO3C021998.2 Cucumis melo
Migut.D01807 Erythranthe guttata
Migut.E00084 Erythranthe guttata
Migut.H00932 Erythranthe guttata
Migut.K01318 Erythranthe guttata
MSTRG.3247 Avicennia marina
MSTRG.3332 Avicennia marina
MSTRG.4435 Avicennia marina
MSTRG.4436 Avicennia marina
Nitab4.5_0000212g0050 Nicotiana tabacum
Nitab4.5_0000568g0010 Nicotiana tabacum
Nitab4.5_0002980g0030 Nicotiana tabacum
Nitab4.5_0004623g0010 Nicotiana tabacum
Nitab4.5_0008692g0020 Nicotiana tabacum
Nn3g17271 Nelumbo nucifera
Nn4g23202 Nelumbo nucifera
Oeu002090.1 Olea europaea
Oeu005746.1 Olea europaea
Oeu005747.1 Olea europaea
Oeu005748.2 Olea europaea
Oeu014037.1 Olea europaea
Oeu019465.1 Olea europaea
Oeu027849.1 Olea europaea
Oeu062106.1 Olea europaea
Os07g0631700 Oryza sativa ssp. japonica
Os11g0600500 Oryza sativa ssp. japonica
Os12g0140050 Oryza sativa ssp. japonica
Peaxi162Scf00011g00282 Petunia axillaris
Peaxi162Scf00222g00056 Petunia axillaris
Peaxi162Scf00451g00071 Petunia axillaris
PGR004G1060 Punica granatum
PGR044G2639 Punica granatum
PGR083G0276 Punica granatum
PGR083G0803 Punica granatum
PGR102G1808 Punica granatum
PGSC0003DMG400001333 Solanum tuberosum
PGSC0003DMG400025131 Solanum tuberosum
Phvul.002G083900 Phaseolus vulgaris
Phvul.008G037300 Phaseolus vulgaris
Potri.004G122900 Populus trichocarpa
Potri.008G087900 Populus trichocarpa
Potri.017G084800 Populus trichocarpa
Prupe.1G276100 Prunus persica
Prupe.3G266000 Prunus persica
Prupe.5G194800 Prunus persica
Psat0ss2585g0440 Pisum sativum
Psat3g200360 Pisum sativum
Psat7g135920 Pisum sativum
PSO013G0121 Papaver somniferum
PSO017G4518 Papaver somniferum
PSO170G1488 Papaver somniferum
PSO478G4897 Papaver somniferum
PSO832G2801 Papaver somniferum
QL02p082514 Quercus lobata
QL03p068673 Quercus lobata
QL10p017195 Quercus lobata
QL10p017202 Quercus lobata
RcHm_v2.0_Chr2g0167751 Rosa chinensis
RcHm_v2.0_Chr4g0439581 Rosa chinensis
RcHm_v2.0_Chr7g0181581 Rosa chinensis
Rhsim08G0154100 Rhododendron simsii
Rhsim10G0037300 Rhododendron simsii
Sabra08G0065700 Salix brachista
Sabra17G0074700 Salix brachista
SalBow1G3065 Salvia bowleyana
SalBow1G3475 Salvia bowleyana
SalBow1G4949 Salvia bowleyana
SalBow2G1572 Salvia bowleyana
SalBow3G1393 Salvia bowleyana
SalBow8G0029 Salvia bowleyana
Sc04g0008020 Simmondsia chinensis
Sc10g0003510 Simmondsia chinensis
Sc11g0002020 Simmondsia chinensis
Sed0001880 Sechium edule
Sed0011892 Sechium edule
Sed0018974 Sechium edule
SGA_v2.0_scaffold122G33232 Striga asiatica
SGA_v2.0_scaffold30G12542 Striga asiatica
SGA_v2.0_scaffold413G51189 Striga asiatica
SGA_v2.0_scaffold4G02436 Striga asiatica
Solyc02g067220.4 Solanum lycopersicum
Solyc02g088090.1 Solanum lycopersicum
Sopen02g016400 Solanum pennellii
Sopen02g032800 Solanum pennellii
Sp2g17630 Schrenkiella parvula
Sp7g02340 Schrenkiella parvula
TAR371G1189 Trochodendron aralioides
TAR374G0829 Trochodendron aralioides
TAR622G0893 Trochodendron aralioides
TAR629G1678 Trochodendron aralioides
THA.LOC104805475 Tarenaya hassleriana
THA.LOC104823116 Tarenaya hassleriana
Thecc.02G344300 Theobroma cacao
Thecc.04G084400 Theobroma cacao
Thhalv10005639m.g Eutrema salsugineum
Thhalv10028351m.g Eutrema salsugineum
TPR.G33550 Trifolium pratense
TPR.G5396 Trifolium pratense
TWI18G1108 Tripterygium wilfordii
TWI32G0278 Tripterygium wilfordii
TWI34G1788 Tripterygium wilfordii
TWI75G1605 Tripterygium wilfordii
TWI79G1137 Tripterygium wilfordii
unitig_0.g1797 Utricularia gibba
vmacro17534 Vaccinium macrocarpon
VMungo1383G0436 Vigna mungo
Zm00001eb099610 Zea mays
Zm00001eb110130 Zea mays
Zm00001eb167410 Zea mays
Zm00001eb328350 Zea mays

User provided reference genes

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