Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p03540 Brassica napus
A03p07790 Brassica napus
A04p26330 Brassica napus
A08p24870 Brassica napus
A09p36690 Brassica napus
Aa31LG11G13200 Aethionema arabicum
Aa31LG6G5860 Aethionema arabicum
Aa31LG9G14100 Aethionema arabicum
Actinidia06808 Actinidia chinensis
Actinidia07658 Actinidia chinensis
Actinidia12596 Actinidia chinensis
Actinidia39530 Actinidia chinensis
Ah.06g195480 Amaranthus hybridus
AL1G43590 Arabidopsis lyrata
AL4G30350 Arabidopsis lyrata
AL6G27400 Arabidopsis lyrata
Aqoxy1G01946 Aquilegia oxysepala
Aqoxy2G02749 Aquilegia oxysepala
Aqoxy4G00213 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.05THYH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.68LYJE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8WY03U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C3SPHV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NR0K7A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U4C2R0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UFQ84G Arachis hypogaea
AT1G29760 Arabidopsis thaliana
AT2G34380 Arabidopsis thaliana
AT5G16460 Arabidopsis thaliana
ATR0165G010 Amborella trichopoda
ATR0213G022 Amborella trichopoda
ATR1145G011 Amborella trichopoda
Atru.chr10.1518 Acer truncatum
Atru.chr12.2088 Acer truncatum
AUR62000310 Chenopodium quinoa
AUR62006654 Chenopodium quinoa
BcaB01g04981 Brassica carinata
BcaB03g12176 Brassica carinata
BcaB06g28756 Brassica carinata
BcaB06g28760 Brassica carinata
BcaB06g28762 Brassica carinata
BcaB07g32563 Brassica carinata
BcaC01g00134 Brassica carinata
BcaC01g00135 Brassica carinata
BcaC03g18491 Brassica carinata
BcaC05g26991 Brassica carinata
BolC2t06753H Brassica oleracea
BolC3t13397H Brassica oleracea
BolC3t19872H Brassica oleracea
BolC4t27840H Brassica oleracea
BolC5t31575H Brassica oleracea
BraA02t05325Z Brassica rapa
BraA03t10106Z Brassica rapa
BraA04t18136Z Brassica rapa
BraA08t34442Z Brassica rapa
BraA09t39188Z Brassica rapa
C02p08360 Brassica napus
C03p09010 Brassica napus
C03p76160 Brassica napus
C04p63730 Brassica napus
C05p28510 Brassica napus
CAN.G1191.11 Capsicum annuum
CAN.G1191.12 Capsicum annuum
CAN.G217.9 Capsicum annuum
CAN.G375.41 Capsicum annuum
CAN.G411.28 Capsicum annuum
CANSAT54G1934 Cannabis sativa
CANSAT64G1043 Cannabis sativa
CARHR029130 Cardamine hirsuta
CARHR128460 Cardamine hirsuta
CARHR196790 Cardamine hirsuta
Carub.0001s2800 Capsella rubella
Carub.0004s1605 Capsella rubella
Carub.0006s1466 Capsella rubella
Ca_00485_v3 Cicer arietinum L.
Ca_07988_v3 Cicer arietinum L.
Ca_17883_v3 Cicer arietinum L.
CBR_g34005 Chara braunii
CBR_g70744 Chara braunii
Cc02_g15900 Coffea canephora
Cc05_g10880 Coffea canephora
Cc09_g03650 Coffea canephora
CDE02G2274 Ceratophyllum demersum
CDE04G0871 Ceratophyllum demersum
Cfa001095 Carpinus fangiana
Ciclev10013740m.g Citrus clementina
Ciclev10014980m.g Citrus clementina
Ciclev10024123m.g Citrus clementina
CiPaw.07G080300 Carya illinoinensis
CiPaw.09G136000 Carya illinoinensis
ClCG01G024030 Citrullus lanatus
ClCG03G010670 Citrullus lanatus
COL.COLO4_19824 Corchorus olitorius
COL.COLO4_22848 Corchorus olitorius
COL.COLO4_22850 Corchorus olitorius
Cpa.g.c47488 Carica papaya
Cpa.g.sc124.13 Carica papaya
Cpa.g.sc39.11 Carica papaya
Cpa.g.sc77.45 Carica papaya
CsaV3_6G051160 Cucumis sativus L.
CSS0006478 Camellia sinensis var. sinensis
CSS0029955 Camellia sinensis var. sinensis
CSS0047825 Camellia sinensis var. sinensis
CSS0048982 Camellia sinensis var. sinensis
DCAR_002121 Daucus carota
DCAR_003969 Daucus carota
DCAR_019606 Daucus carota
DCAR_031610 Daucus carota
Dinv15012 Davidia involucrata
Dinv18388 Davidia involucrata
Dinv29097 Davidia involucrata
Dinv32323 Davidia involucrata
Duzib160G0890 Durio zibethinus
Duzib192G0871 Durio zibethinus
Duzib235G1340 Durio zibethinus
ECA232G1944 Erigeron canadensis
ECA234G2299 Erigeron canadensis
ECA236G4752 Erigeron canadensis
EL10Ac3g05623 Beta vulgaris
EL10Ac4g09964 Beta vulgaris
Eucgr.B00958 Eucalyptus grandis
Eucgr.D00416 Eucalyptus grandis
Eucgr.D00420 Eucalyptus grandis
Eucgr.H01389 Eucalyptus grandis
FAN02G0985 Fragaria x ananassa
FAN02G1903 Fragaria x ananassa
FAN05G1516 Fragaria x ananassa
FAN05G4152 Fragaria x ananassa
FAN09G2981 Fragaria x ananassa
FAN11G1503 Fragaria x ananassa
FAN11G3654 Fragaria x ananassa
FAN14G1923 Fragaria x ananassa
FAN14G4226 Fragaria x ananassa
FAN16G0395 Fragaria x ananassa
FAN16G3110 Fragaria x ananassa
FAN21G0997 Fragaria x ananassa
FAN21G2634 Fragaria x ananassa
FAN21G3358 Fragaria x ananassa
FAN25G0224 Fragaria x ananassa
FvH4_3g07070 Fragaria vesca
FvH4_3g17960 Fragaria vesca
FvH4_6g00490 Fragaria vesca
FvH4_6g08010 Fragaria vesca
Glyma.05G162700 Glycine max
Glyma.09G250400 Glycine max
Glyma.15G087400 Glycine max
Glyma.18G242100 Glycine max
Gohir.A05G391800 Gossypium hirsutum
Gohir.A06G198600 Gossypium hirsutum
Gohir.A10G033300 Gossypium hirsutum
Gohir.D04G025500 Gossypium hirsutum
Gohir.D06G206000 Gossypium hirsutum
Gohir.D10G034000 Gossypium hirsutum
Gorai.010G240300 Gossypium raimondii
Gorai.011G035700 Gossypium raimondii
Gorai.012G028100 Gossypium raimondii
GSVIVG01014151001 Vitis vinifera
GSVIVG01019108001 Vitis vinifera
GSVIVG01021275001 Vitis vinifera
HanXRQChr02g0059841 Helianthus annuus
HanXRQChr04g0116231 Helianthus annuus
HanXRQChr05g0141781 Helianthus annuus
HanXRQChr11g0343811 Helianthus annuus
HanXRQChr16g0498641 Helianthus annuus
HanXRQChr17g0556941 Helianthus annuus
Haze_02117 Corylus avellana
Haze_05404 Corylus avellana
Hma1.2p1_0050F.1_g028950 Hydrangea macrophylla
Hma1.2p1_1150F.1_g261800 Hydrangea macrophylla
HPP92_008117 Vanilla planifolia
HPP92_025851 Vanilla planifolia
Hund07347 Selenicereus undatus
Hund21456 Selenicereus undatus
Lalb_Chr03g0038621 Lupinus albus
Lalb_Chr12g0204881 Lupinus albus
Lalb_Chr13g0295371 Lupinus albus
Lalb_Chr15g0086491 Lupinus albus
Lj1A1177T98 Lonicera japonica
Lj1A826G60 Lonicera japonica
Lj1g0024785 Lotus japonicus
Lj2A316T70 Lonicera japonica
Lj3A637T23 Lonicera japonica
Lj4g0025167 Lotus japonicus
Lsat_1_v5_gn_1_112181 Lactuca sativa
Lsat_1_v5_gn_4_49340 Lactuca sativa
Lsat_1_v5_gn_7_25220 Lactuca sativa
Lsat_1_v5_gn_9_49060 Lactuca sativa
Manes.03G091800 Manihot esculenta
Manes.05G011866 Manihot esculenta
Manes.12G005700 Manihot esculenta
Manes.16G044100 Manihot esculenta
Mapoly0115s0029 Marchantia polymorpha
MBI06_g16566_MAGBIO Magnolia biondii
MBI11_g19463_MAGBIO Magnolia biondii
MBI11_g39359_MAGBIO Magnolia biondii
MCO10G299 Micromonas commoda
MD00G1007100 Malus domestica
MD03G1246800 Malus domestica
MD04G1244900 Malus domestica
MD11G1267400 Malus domestica
Medtr2g017670 Medicago truncatula
Medtr7g080030 Medicago truncatula
Medtr8g087730 Medicago truncatula
MELO3C007187.2 Cucumis melo
MELO3C010056.2 Cucumis melo
Migut.F02134 Erythranthe guttata
Migut.H01402 Erythranthe guttata
Migut.M00702 Erythranthe guttata
Nitab4.5_0000083g0130 Nicotiana tabacum
Nitab4.5_0000347g0160 Nicotiana tabacum
Nitab4.5_0001435g0060 Nicotiana tabacum
Nitab4.5_0001778g0180 Nicotiana tabacum
Nitab4.5_0004191g0010 Nicotiana tabacum
Nn2g12612 Nelumbo nucifera
Nn3g21047 Nelumbo nucifera
Oeu010026.1 Olea europaea
Oeu033707.1 Olea europaea
Oeu039867.2 Olea europaea
Oeu046894.1 Olea europaea
Oeu058462.1 Olea europaea
Oeu060188.1 Olea europaea
Os09g0534000 Oryza sativa ssp. japonica
Os12g0148700 Oryza sativa ssp. japonica
Peaxi162Scf00048g00816 Petunia axillaris
Peaxi162Scf00111g01452 Petunia axillaris
Peaxi162Scf00112g01717 Petunia axillaris
Peaxi162Scf00854g00214 Petunia axillaris
PGR031G0337 Punica granatum
PGR031G1225 Punica granatum
PGSC0003DMG400007064 Solanum tuberosum
PGSC0003DMG400007260 Solanum tuberosum
PGSC0003DMG400028410 Solanum tuberosum
Phvul.002G242400 Phaseolus vulgaris
Phvul.006G170800 Phaseolus vulgaris
Phvul.008G054075 Phaseolus vulgaris
Potri.003G025975 Populus trichocarpa
Potri.011G072200 Populus trichocarpa
Potri.013G085850 Populus trichocarpa
Pp3c1_27960 Physcomitrium patens
Pp3c3_38050 Physcomitrium patens
Pp3c8_820 Physcomitrium patens
Prupe.4G068800 Prunus persica
Prupe.4G158100 Prunus persica
Prupe.4G158200 Prunus persica
Prupe.6G361500 Prunus persica
Psat1g193200 Pisum sativum
Psat3g138200 Pisum sativum
Psat7g067320 Pisum sativum
PSO017G0082 Papaver somniferum
PSO170G6085 Papaver somniferum
PSO675G9338 Papaver somniferum
PSO782G0530 Papaver somniferum
QL01p045495 Quercus lobata
QL05p050338 Quercus lobata
RcHm_v2.0_Chr3g0447871 Rosa chinensis
RcHm_v2.0_Chr5g0012061 Rosa chinensis
Rhsim02G0137700 Rhododendron simsii
Rhsim05G0145900 Rhododendron simsii
Rhsim05G0146000 Rhododendron simsii
Rhsim06G0211000 Rhododendron simsii
Sabra04G0041900 Salix brachista
Sabra11G0056600 Salix brachista
Sabra11G0060000 Salix brachista
Sabra13G0077900 Salix brachista
SalBow1G1769 Salvia bowleyana
SalBow7G2784 Salvia bowleyana
SalBow7G4550 Salvia bowleyana
Sc16g0010380 Simmondsia chinensis
Sc17g0005550 Simmondsia chinensis
Sed0005400 Sechium edule
Sed0010937 Sechium edule
Sed0019424 Sechium edule
Sed0024210 Sechium edule
SEGI_09886 Sequoiadendron giganteum
SEGI_35539 Sequoiadendron giganteum
SGA_v2.0_scaffold106G30609 Striga asiatica
SGA_v2.0_scaffold130G34273 Striga asiatica
SGA_v2.0_scaffold62G21503 Striga asiatica
SHI13718 Sapria himalayana
SMO172G0095 Selaginella moellendorffii
SMO367G0850 Selaginella moellendorffii
Solyc02g071900.3 Solanum lycopersicum
Solyc04g056380.3 Solanum lycopersicum
Solyc07g062230.4 Solanum lycopersicum
Sopen02g020890 Solanum pennellii
Sopen04g025290 Solanum pennellii
Sopen07g030510 Solanum pennellii
Sp1g25650 Schrenkiella parvula
Sp4g16650 Schrenkiella parvula
Sp6g27720 Schrenkiella parvula
TAR362G0096 Trochodendron aralioides
TAR626G1033 Trochodendron aralioides
TAR627G0673 Trochodendron aralioides
TAR629G0376 Trochodendron aralioides
THA.LOC104812310 Tarenaya hassleriana
THA.LOC104820633 Tarenaya hassleriana
THA.LOC104827173 Tarenaya hassleriana
Thecc.05G199100 Theobroma cacao
Thecc.06G163200 Theobroma cacao
Thecc.07G119600 Theobroma cacao
Thecc.07G170100 Theobroma cacao
Thhalv10007317m.g Eutrema salsugineum
Thhalv10015351m.g Eutrema salsugineum
TPR.G31800 Trifolium pratense
TPR.G4518 Trifolium pratense
TPR.G6783 Trifolium pratense
TWI36G0914 Tripterygium wilfordii
TWI39G0758 Tripterygium wilfordii
TWI53G0885 Tripterygium wilfordii
unitig_748.g7815 Utricularia gibba
unitig_749.g14053 Utricularia gibba
vmacro10941 Vaccinium macrocarpon
vmacro11962 Vaccinium macrocarpon
vmacro19652 Vaccinium macrocarpon
VMungo0251G2043 Vigna mungo
VMungo0540G0417 Vigna mungo
VMungo1383G2001 Vigna mungo
Zm00001eb319720 Zea mays

User provided reference genes

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