Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18070 Brassica napus
A02p09880 Brassica napus
A03p56960 Brassica napus
A08p20680 Brassica napus
Aa31LG3G11040 Aethionema arabicum
Aa31LG5G12100 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1362 Anthoceros agrestis
Actinidia05074 Actinidia chinensis
Actinidia12369 Actinidia chinensis
Actinidia32270 Actinidia chinensis
Actinidia36370 Actinidia chinensis
Ah.06g182510 Amaranthus hybridus
Ah.16g101210 Amaranthus hybridus
AL7G25990 Arabidopsis lyrata
AL8G30620 Arabidopsis lyrata
Aqoxy1G03022 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.068WTC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F6DY4B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FDIY97 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G82VRY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X1JA7R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZPIU38 Arachis hypogaea
AT4G26850 Arabidopsis thaliana
AT5G55120 Arabidopsis thaliana
ATR0165G013 Amborella trichopoda
ATR0681G300 Amborella trichopoda
Atru.chr10.839 Acer truncatum
Atru.chr2.3502 Acer truncatum
AUR62015836 Chenopodium quinoa
AUR62020383 Chenopodium quinoa
AUR62023177 Chenopodium quinoa
AUR62023224 Chenopodium quinoa
BcaB03g12512 Brassica carinata
BcaC03g14264 Brassica carinata
BcaC06g32722 Brassica carinata
BcaC06g32723 Brassica carinata
BcaC07g38254 Brassica carinata
BcaNung03557 Brassica carinata
BolC1t02237H Brassica oleracea
BolC2t07743H Brassica oleracea
BolC7t46003H Brassica oleracea
BolC8t48677H Brassica oleracea
BraA01t01762Z Brassica rapa
BraA02t06052Z Brassica rapa
BraA03t14766Z Brassica rapa
BraA08t34022Z Brassica rapa
C01p23030 Brassica napus
C02p16420 Brassica napus
C02p16430 Brassica napus
C02p16440 Brassica napus
C07p55110 Brassica napus
C08p10000 Brassica napus
CAN.G1061.41 Capsicum annuum
CAN.G65.175 Capsicum annuum
CANSAT11G2642 Cannabis sativa
CANSAT35G1736 Cannabis sativa
CARHR234470 Cardamine hirsuta
CARHR268460 Cardamine hirsuta
Carub.0007s1399 Capsella rubella
Carub.0008s1541 Capsella rubella
Ca_06339_v3 Cicer arietinum L.
Ca_26180_v3 Cicer arietinum L.
CBR_g12579 Chara braunii
CBR_g16848 Chara braunii
CBR_g16849 Chara braunii
Cc05_g14140 Coffea canephora
Cc07_g08040 Coffea canephora
CDE02G3881 Ceratophyllum demersum
CDE03G0442 Ceratophyllum demersum
CDE06G0198 Ceratophyllum demersum
CDE06G1791 Ceratophyllum demersum
CDE08G1004 Ceratophyllum demersum
CDE08G1602 Ceratophyllum demersum
Cfa000811 Carpinus fangiana
Cfa020298 Carpinus fangiana
Ciclev10006850m.g Citrus clementina
Ciclev10008255m.g Citrus clementina
Ciclev10013649m.g Citrus clementina
Ciclev10017717m.g Citrus clementina
CiPaw.03G070100 Carya illinoinensis
CiPaw.11G193300 Carya illinoinensis
CiPaw.12G132400 Carya illinoinensis
ClCG09G011000 Citrullus lanatus
COL.COLO4_15746 Corchorus olitorius
COL.COLO4_26862 Corchorus olitorius
Cpa.g.sc116.36 Carica papaya
Cpa.g.sc12.261 Carica papaya
Cre13.g588150 Chlamydomonas reinhardtii
CsaV3_7G022020 Cucumis sativus L.
CSS0002336 Camellia sinensis var. sinensis
CSS0005762 Camellia sinensis var. sinensis
CSS0013063 Camellia sinensis var. sinensis
CSS0016483 Camellia sinensis var. sinensis
CSS0027346 Camellia sinensis var. sinensis
CSS0038943 Camellia sinensis var. sinensis
DCAR_013194 Daucus carota
DCAR_016654 Daucus carota
Dinv19024 Davidia involucrata
Dinv22241 Davidia involucrata
Dinv40787 Davidia involucrata
Duzib170G0336 Durio zibethinus
Duzib192G1062 Durio zibethinus
Duzib213G0236 Durio zibethinus
ECA236G1142 Erigeron canadensis
ECA246G4605 Erigeron canadensis
EL10Ac2g04467 Beta vulgaris
EL10Ac4g07748 Beta vulgaris
Eucgr.F00715 Eucalyptus grandis
Eucgr.F03491 Eucalyptus grandis
Eucgr.J01552 Eucalyptus grandis
Eucgr.J01568 Eucalyptus grandis
Eucgr.J01570 Eucalyptus grandis
Eucgr.J01575 Eucalyptus grandis
Eucgr.J01577 Eucalyptus grandis
Eucgr.J01579 Eucalyptus grandis
FAN03G0455 Fragaria x ananassa
FAN06G1724 Fragaria x ananassa
FAN06G1801 Fragaria x ananassa
FAN07G0655 Fragaria x ananassa
FAN10G1243 Fragaria x ananassa
FAN10G4070 Fragaria x ananassa
FAN11G1600 Fragaria x ananassa
FAN11G2305 Fragaria x ananassa
FAN12G3218 Fragaria x ananassa
FAN12G3439 Fragaria x ananassa
FAN16G0388 Fragaria x ananassa
FAN16G1653 Fragaria x ananassa
FAN21G2142 Fragaria x ananassa
FAN22G2352 Fragaria x ananassa
FAN25G1669 Fragaria x ananassa
FAN25G3632 Fragaria x ananassa
FvH4_3g10190 Fragaria vesca
FvH4_3g23310 Fragaria vesca
FvH4_4g27370 Fragaria vesca
FvH4_7g13380 Fragaria vesca
Glyma.02G292800 Glycine max
Glyma.08G319500 Glycine max
Glyma.14G021800 Glycine max
Glyma.18G092900 Glycine max
Gohir.1Z049737 Gossypium hirsutum
Gohir.A01G083300 Gossypium hirsutum
Gohir.A05G111200 Gossypium hirsutum
Gohir.A13G137200 Gossypium hirsutum
Gohir.D01G069800 Gossypium hirsutum
Gohir.D05G111500 Gossypium hirsutum
Gohir.D05G111600 Gossypium hirsutum
Gohir.D05G373300 Gossypium hirsutum
Gohir.D13G141700 Gossypium hirsutum
Gorai.002G092200 Gossypium raimondii
Gorai.009G115800 Gossypium raimondii
Gorai.009G442000 Gossypium raimondii
Gorai.013G158600 Gossypium raimondii
GSVIVG01021663001 Vitis vinifera
GSVIVG01021664001 Vitis vinifera
GSVIVG01030833001 Vitis vinifera
GSVIVG01037703001 Vitis vinifera
HanXRQChr05g0159791 Helianthus annuus
HanXRQChr08g0233541 Helianthus annuus
HanXRQChr15g0470601 Helianthus annuus
Haze_05857 Corylus avellana
Haze_05862 Corylus avellana
Haze_09722 Corylus avellana
Hma1.2p1_0036F.1_g023260 Hydrangea macrophylla
Hma1.2p1_0501F.1_g167340 Hydrangea macrophylla
Hma1.2p1_0832F.1_g225490 Hydrangea macrophylla
Hma1.2p1_1332F.1_g276060 Hydrangea macrophylla
HPP92_004477 Vanilla planifolia
HPP92_015678 Vanilla planifolia
Hund02032 Selenicereus undatus
Hund16213 Selenicereus undatus
Hund23212 Selenicereus undatus
Lalb_Chr10g0107091 Lupinus albus
Lalb_Chr15g0081491 Lupinus albus
Lalb_Chr18g0053381 Lupinus albus
Lj1C879T2 Lonicera japonica
Lj1E879G0 Lonicera japonica
Lj2A434T50 Lonicera japonica
Lj6g0021283 Lotus japonicus
Lj8A172T68 Lonicera japonica
LjContig00272g0020344 Lotus japonicus
Lsat_1_v5_gn_5_3140 Lactuca sativa
Lsat_1_v5_gn_7_113861 Lactuca sativa
Manes.01G116800 Manihot esculenta
Manes.03G132900 Manihot esculenta
Manes.14G123900 Manihot esculenta
Manes.15G067700 Manihot esculenta
Mapoly0036s0021 Marchantia polymorpha
MBI02_g25375_MAGBIO Magnolia biondii
MBI07_g19551_MAGBIO Magnolia biondii
MBI13_g34061_MAGBIO Magnolia biondii
MCO08G036 Micromonas commoda
MD03G1195300 Malus domestica
MD05G1272400 Malus domestica
MD05G1272500 Malus domestica
MD10G1252600 Malus domestica
MD11G1211800 Malus domestica
MD13G1206200 Malus domestica
Medtr3g053020 Medicago truncatula
Medtr5g093390 Medicago truncatula
MELO3C013136.2 Cucumis melo
Migut.H01803 Erythranthe guttata
Migut.M01727 Erythranthe guttata
MSTRG.6948 Avicennia marina
Nitab4.5_0002664g0010 Nicotiana tabacum
Nitab4.5_0003132g0010 Nicotiana tabacum
Nitab4.5_0004453g0010 Nicotiana tabacum
Nitab4.5_0004918g0040 Nicotiana tabacum
Nn1g02420 Nelumbo nucifera
Nn1g03429 Nelumbo nucifera
Nn1g07244 Nelumbo nucifera
Nn3g18270 Nelumbo nucifera
Nn3g20146 Nelumbo nucifera
Nn3g21328 Nelumbo nucifera
Nn4g24219 Nelumbo nucifera
Nn4g24315 Nelumbo nucifera
Nn5g28854 Nelumbo nucifera
Nn6g33318 Nelumbo nucifera
Nn6g33331 Nelumbo nucifera
Oeu002323.1 Olea europaea
Oeu003748.1 Olea europaea
Oeu008007.2 Olea europaea
Oeu009073.1 Olea europaea
Oeu013125.1 Olea europaea
Oeu019593.1 Olea europaea
Oeu026393.1 Olea europaea
Oeu047403.1 Olea europaea
Oeu054298.2 Olea europaea
Oeu054299.1 Olea europaea
Os01g0901300 Oryza sativa ssp. japonica
Os12g0190000 Oryza sativa ssp. japonica
Os12g0612100 Oryza sativa ssp. japonica
Peaxi162Scf00375g00214 Petunia axillaris
Peaxi162Scf02113g00015 Petunia axillaris
PGR031G1969 Punica granatum
PGR042G1497 Punica granatum
PGR083G0148 Punica granatum
PGR083G0627 Punica granatum
PGR093G0006 Punica granatum
PGSC0003DMG400027012 Solanum tuberosum
PGSC0003DMG400030654 Solanum tuberosum
Phvul.006G046700 Phaseolus vulgaris
Phvul.008G269600 Phaseolus vulgaris
Potri.001G355600 Populus trichocarpa
Potri.011G087200 Populus trichocarpa
Potri.017G126100 Populus trichocarpa
Pp3c20_6430 Physcomitrium patens
Pp3c24_16040 Physcomitrium patens
Pp3c8_17430 Physcomitrium patens
Prupe.4G090900 Prunus persica
Prupe.4G091000 Prunus persica
Prupe.4G220800 Prunus persica
Psat2g012280 Pisum sativum
Psat5g038680 Pisum sativum
PSO017G0707 Papaver somniferum
PSO478G0267 Papaver somniferum
PSO541G0694 Papaver somniferum
PSO675G5377 Papaver somniferum
QL05p062530 Quercus lobata
QL08p006964 Quercus lobata
QL11p003548 Quercus lobata
QL11p003743 Quercus lobata
RcHm_v2.0_Chr1g0352701 Rosa chinensis
RcHm_v2.0_Chr5g0016391 Rosa chinensis
RcHm_v2.0_Chr5g0041101 Rosa chinensis
Rhsim06G0222100 Rhododendron simsii
Sabra03G0049900 Salix brachista
Sabra11G0071200 Salix brachista
Sabra15G0069700 Salix brachista
Sabra17G0105800 Salix brachista
SalBow3G1795 Salvia bowleyana
SalBow8G0922 Salvia bowleyana
Sc03g0008410 Simmondsia chinensis
Sc11g0008710 Simmondsia chinensis
Sed0002909 Sechium edule
Sed0003516 Sechium edule
Sed0005541 Sechium edule
SEGI_18212 Sequoiadendron giganteum
SGA_v2.0_scaffold121G33168 Striga asiatica
SGA_v2.0_scaffold171G38915 Striga asiatica
SGA_v2.0_scaffold363G49950 Striga asiatica
SHI08094 Sapria himalayana
SMO146G0367 Selaginella moellendorffii
SMO203G0191 Selaginella moellendorffii
SMO367G0974 Selaginella moellendorffii
Solyc02g091510.3 Solanum lycopersicum
Solyc06g073320.3 Solanum lycopersicum
Sopen02g036130 Solanum pennellii
Sopen06g029690 Solanum pennellii
Sp6g17050 Schrenkiella parvula
Sp7g24810 Schrenkiella parvula
TAR371G0576 Trochodendron aralioides
TAR622G0772 Trochodendron aralioides
TAR624G0444 Trochodendron aralioides
TAR627G0030 Trochodendron aralioides
TAR629G0510 Trochodendron aralioides
TAR629G1178 Trochodendron aralioides
TAR629G2211 Trochodendron aralioides
THA.LOC104811624 Tarenaya hassleriana
THA.LOC104813430 Tarenaya hassleriana
Thecc.04G118800 Theobroma cacao
Thecc.06G004800 Theobroma cacao
Thecc.07G030800 Theobroma cacao
Thhalv10013622m.g Eutrema salsugineum
Thhalv10025206m.g Eutrema salsugineum
TPR.G1153 Trifolium pratense
TPR.G33788 Trifolium pratense
TPR.G36420 Trifolium pratense
TWI38G0739 Tripterygium wilfordii
TWI38G1300 Tripterygium wilfordii
TWI39G0342 Tripterygium wilfordii
TWI74G0421 Tripterygium wilfordii
unitig_62.g23289 Utricularia gibba
unitig_85.g27331 Utricularia gibba
vmacro22327 Vaccinium macrocarpon
vmacro22376 Vaccinium macrocarpon
VMungo0540G2264 Vigna mungo
VMungo0647G1720 Vigna mungo
Zm00001eb144410 Zea mays
Zm00001eb264880 Zea mays

User provided reference genes

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