Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p11840 Brassica napus
A01p11850 Brassica napus
A03p52270 Brassica napus
A03p52280 Brassica napus
A03p52290 Brassica napus
A08p14610 Brassica napus
Aa31LG6G2460 Aethionema arabicum
Actinidia12958 Actinidia chinensis
Ah.08g210440 Amaranthus hybridus
Ah.09g231000 Amaranthus hybridus
AL7G33800 Arabidopsis lyrata
AL7G33810 Arabidopsis lyrata
AL7G33820 Arabidopsis lyrata
Aqoxy1G00155 Aquilegia oxysepala
Aqoxy1G00156 Aquilegia oxysepala
Aqoxy1G01404 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.35ELPU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6RE8G6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AZ9RHT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JMC3HZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N144JB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PE1JEE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SI7AR4 Arachis hypogaea
AT4G20040 Arabidopsis thaliana
AT4G20050 Arabidopsis thaliana
ATR0329G062 Amborella trichopoda
ATR0344G002 Amborella trichopoda
ATR0476G001 Amborella trichopoda
ATR0697G051 Amborella trichopoda
ATR0822G001 Amborella trichopoda
ATR1117G001 Amborella trichopoda
Atru.chr10.385 Acer truncatum
Atru.chr10.390 Acer truncatum
Atru.chr3.3530 Acer truncatum
Atru.chr3.3531 Acer truncatum
AUR62002651 Chenopodium quinoa
AUR62006219 Chenopodium quinoa
AUR62007428 Chenopodium quinoa
AUR62010961 Chenopodium quinoa
AUR62021471 Chenopodium quinoa
AUR62036999 Chenopodium quinoa
BcaB03g11655 Brassica carinata
BcaC01g00651 Brassica carinata
BcaC06g30642 Brassica carinata
BcaC06g30643 Brassica carinata
BcaC09g51347 Brassica carinata
BcaC09g51348 Brassica carinata
BcaNung03489 Brassica carinata
BolC1t01371H Brassica oleracea
BolC1t01372H Brassica oleracea
BolC3t20553H Brassica oleracea
BolC7t45573H Brassica oleracea
BolC7t45574H Brassica oleracea
BraA01t01126Z Brassica rapa
BraA01t01127Z Brassica rapa
BraA03t14302Z Brassica rapa
BraA03t14303Z Brassica rapa
BraA08t33448Z Brassica rapa
C01p14040 Brassica napus
C01p14050 Brassica napus
C03p82720 Brassica napus
C07p50700 Brassica napus
C07p50710 Brassica napus
C07p50720 Brassica napus
CAN.G1299.1 Capsicum annuum
CAN.G883.3 Capsicum annuum
CANSAT01G3262 Cannabis sativa
CANSAT35G0434 Cannabis sativa
CANSAT35G1621 Cannabis sativa
CARHR226830 Cardamine hirsuta
CARHR226840 Cardamine hirsuta
CARHR226850 Cardamine hirsuta
CARHR226860 Cardamine hirsuta
Carub.0007s2108 Capsella rubella
Carub.0007s2109 Capsella rubella
Ca_01991_v3 Cicer arietinum L.
Ca_01996_v3 Cicer arietinum L.
Ca_01998_v3 Cicer arietinum L.
Ca_04317_v3 Cicer arietinum L.
Cc09_g05370 Coffea canephora
Cc09_g05390 Coffea canephora
CDE05G1005 Ceratophyllum demersum
Ciclev10015026m.g Citrus clementina
Ciclev10015034m.g Citrus clementina
Ciclev10023746m.g Citrus clementina
Ciclev10028352m.g Citrus clementina
CiPaw.01G206500 Carya illinoinensis
CiPaw.09G073400 Carya illinoinensis
CiPaw.09G073500 Carya illinoinensis
CiPaw.10G062000 Carya illinoinensis
CiPaw.13G115000 Carya illinoinensis
ClCG01G025540 Citrullus lanatus
ClCG10G014170 Citrullus lanatus
COL.COLO4_07474 Corchorus olitorius
COL.COLO4_18021 Corchorus olitorius
COL.COLO4_18023 Corchorus olitorius
COL.COLO4_37261 Corchorus olitorius
Cpa.g.sc0.45 Carica papaya
Cpa.g.sc176.30 Carica papaya
Cpa.g.sc30.123 Carica papaya
Cpa.g.sc30.124 Carica papaya
Cpa.g.sc30.125 Carica papaya
CsaV3_3G042480 Cucumis sativus L.
CsaV3_6G052790 Cucumis sativus L.
CSS0009768 Camellia sinensis var. sinensis
CSS0030128 Camellia sinensis var. sinensis
CSS0040642 Camellia sinensis var. sinensis
CSS0041820 Camellia sinensis var. sinensis
DCAR_001282 Daucus carota
DCAR_001283 Daucus carota
DCAR_003764 Daucus carota
DCAR_003766 Daucus carota
DCAR_007778 Daucus carota
DCAR_007779 Daucus carota
Dinv19787 Davidia involucrata
Dinv19788 Davidia involucrata
Dinv31177 Davidia involucrata
Dinv31178 Davidia involucrata
Dinv31179 Davidia involucrata
Duzib132G0206 Durio zibethinus
Duzib132G1057 Durio zibethinus
Duzib192G0129 Durio zibethinus
Duzib248G0357 Durio zibethinus
ECA232G2269 Erigeron canadensis
ECA238G0801 Erigeron canadensis
EL10Ac7g16884 Beta vulgaris
EL10Ac8g18447 Beta vulgaris
Eucgr.D00019 Eucalyptus grandis
Eucgr.E04312 Eucalyptus grandis
FAN02G3350 Fragaria x ananassa
FAN05G5594 Fragaria x ananassa
FAN09G2835 Fragaria x ananassa
FAN11G3020 Fragaria x ananassa
FAN14G3440 Fragaria x ananassa
FAN21G0916 Fragaria x ananassa
FAN21G1363 Fragaria x ananassa
FAN25G1104 Fragaria x ananassa
FAN25G2479 Fragaria x ananassa
FvH4_3g12830 Fragaria vesca
FvH4_3g12840 Fragaria vesca
FvH4_6g36530 Fragaria vesca
Glyma.05G133800 Glycine max
Glyma.08G088300 Glycine max
Glyma.09G050900 Glycine max
Glyma.13G054600 Glycine max
Glyma.15G157000 Glycine max
Glyma.15G157300 Glycine max
Glyma.19G032600 Glycine max
Gohir.A12G048900 Gossypium hirsutum
Gohir.D02G240600 Gossypium hirsutum
Gohir.D12G047600 Gossypium hirsutum
Gorai.005G268900 Gossypium raimondii
Gorai.008G050300 Gossypium raimondii
GSVIVG01012138001 Vitis vinifera
GSVIVG01012139001 Vitis vinifera
GSVIVG01029528001 Vitis vinifera
HanXRQChr08g0226011 Helianthus annuus
HanXRQChr08g0226021 Helianthus annuus
HanXRQChr14g0440101 Helianthus annuus
HanXRQChr15g0487391 Helianthus annuus
Haze_06117 Corylus avellana
Haze_06164 Corylus avellana
Hma1.2p1_0088F.1_g045070 Hydrangea macrophylla
HPP92_004193 Vanilla planifolia
HPP92_004194 Vanilla planifolia
HPP92_004195 Vanilla planifolia
HPP92_004196 Vanilla planifolia
HPP92_004197 Vanilla planifolia
HPP92_011009 Vanilla planifolia
Hund05338 Selenicereus undatus
Lalb_Chr02g0158851 Lupinus albus
Lalb_Chr15g0083751 Lupinus albus
Lalb_Chr15g0083761 Lupinus albus
Lalb_Chr18g0052081 Lupinus albus
Lalb_Chr18g0052091 Lupinus albus
Lj1C1148G7 Lonicera japonica
Lj2A343T74 Lonicera japonica
Lj2g0007793 Lotus japonicus
Lj4g0002649 Lotus japonicus
Lj6g0013564 Lotus japonicus
Lj6g0017304 Lotus japonicus
Lsat_1_v5_gn_2_60921 Lactuca sativa
Lsat_1_v5_gn_2_60941 Lactuca sativa
Lsat_1_v5_gn_8_117920 Lactuca sativa
Manes.03G075800 Manihot esculenta
Manes.03G075900 Manihot esculenta
Manes.16G040150 Manihot esculenta
Manes.16G050800 Manihot esculenta
Manes.16G051600 Manihot esculenta
Mapoly0067s0080 Marchantia polymorpha
MBI02_g01142_MAGBIO Magnolia biondii
MBI02_g01143_MAGBIO Magnolia biondii
MBI02_g01144_MAGBIO Magnolia biondii
MBI18_g12532_MAGBIO Magnolia biondii
MBI18_g18105_MAGBIO Magnolia biondii
MBI18_g41906_MAGBIO Magnolia biondii
MBI18_g46334_MAGBIO Magnolia biondii
MBI18_g46620_MAGBIO Magnolia biondii
MBI18_g47125_MAGBIO Magnolia biondii
MBI18_g47302_MAGBIO Magnolia biondii
MD05G1247500 Malus domestica
MD05G1247600 Malus domestica
MD09G1167600 Malus domestica
MD10G1228300 Malus domestica
Medtr2g035760 Medicago truncatula
Medtr2g035790 Medicago truncatula
Medtr4g094732 Medicago truncatula
Medtr6g015785 Medicago truncatula
MELO3C007031.2 Cucumis melo
MELO3C009962.2 Cucumis melo
Migut.M02003 Erythranthe guttata
Migut.M02004 Erythranthe guttata
MSTRG.16367 Avicennia marina
MSTRG.7606 Avicennia marina
Nitab4.5_0000973g0010 Nicotiana tabacum
Nn1g08451 Nelumbo nucifera
Nn7g38308 Nelumbo nucifera
Nn7g38311 Nelumbo nucifera
Oeu018407.1 Olea europaea
Oeu046925.1 Olea europaea
Oeu052634.1 Olea europaea
Oeu056057.1 Olea europaea
Os04g0613200 Oryza sativa ssp. japonica
Peaxi162Scf00199g00105 Petunia axillaris
Peaxi162Scf00199g01019 Petunia axillaris
PGR004G0813 Punica granatum
PGR042G2512 Punica granatum
PGSC0003DMG400009418 Solanum tuberosum
PGSC0003DMG400009419 Solanum tuberosum
Phvul.002G188700 Phaseolus vulgaris
Phvul.004G038700 Phaseolus vulgaris
Phvul.009G242600 Phaseolus vulgaris
Phvul.009G242800 Phaseolus vulgaris
Potri.001G159900 Populus trichocarpa
Potri.003G074600 Populus trichocarpa
Potri.003G075300 Populus trichocarpa
Potri.003G075400 Populus trichocarpa
Potri.003G075500 Populus trichocarpa
Pp3c1_12100 Physcomitrium patens
Pp3c9_20390 Physcomitrium patens
Prupe.3G025600 Prunus persica
Prupe.4G116400 Prunus persica
Prupe.4G116600 Prunus persica
Psat1g066920 Pisum sativum
Psat1g150000 Pisum sativum
Psat7g088160 Pisum sativum
PSO541G3205 Papaver somniferum
PSO675G3458 Papaver somniferum
QL04p014475 Quercus lobata
QL04p014494 Quercus lobata
QL04p014502 Quercus lobata
QL04p014839 Quercus lobata
QL04p014853 Quercus lobata
QL04p014866 Quercus lobata
QL05p087393 Quercus lobata
QL11p012477 Quercus lobata
RcHm_v2.0_Chr2g0148991 Rosa chinensis
RcHm_v2.0_Chr5g0020771 Rosa chinensis
RcHm_v2.0_Chr5g0020781 Rosa chinensis
Rhsim13G0132700 Rhododendron simsii
Rhsim13G0132800 Rhododendron simsii
Sabra01G0132200 Salix brachista
Sabra01G0132600 Salix brachista
Sabra03G0045700 Salix brachista
Sabra03G0045800 Salix brachista
Sabra03G0045900 Salix brachista
Sabra03G0046000 Salix brachista
SalBow8G4823 Salvia bowleyana
Sc05g0004720 Simmondsia chinensis
Sed0007627 Sechium edule
Sed0007899 Sechium edule
SEGI_31800 Sequoiadendron giganteum
SEGI_33703 Sequoiadendron giganteum
SEGI_35817 Sequoiadendron giganteum
SGA_v2.0_scaffold175G39340 Striga asiatica
SGA_v2.0_scaffold175G39342 Striga asiatica
SHI21277 Sapria himalayana
SHI21280 Sapria himalayana
SHI28129 Sapria himalayana
SHI28135 Sapria himalayana
SHI28148 Sapria himalayana
SHI31134 Sapria himalayana
Solyc02g068400.3 Solanum lycopersicum
Solyc02g068410.3 Solanum lycopersicum
Sopen02g017530 Solanum pennellii
Sopen02g017540 Solanum pennellii
Sp7g18500 Schrenkiella parvula
Sp7g18510 Schrenkiella parvula
TAR383G0649 Trochodendron aralioides
TAR383G0788 Trochodendron aralioides
TAR624G1395 Trochodendron aralioides
TAR627G0086 Trochodendron aralioides
TAR627G1109 Trochodendron aralioides
TAR629G1068 Trochodendron aralioides
THA.LOC104806223 Tarenaya hassleriana
THA.LOC104811771 Tarenaya hassleriana
THA.LOC104811793 Tarenaya hassleriana
Thecc.02G004900 Theobroma cacao
Thecc.02G005000 Theobroma cacao
Thecc.06G053700 Theobroma cacao
Thhalv10025062m.g Eutrema salsugineum
Thhalv10025078m.g Eutrema salsugineum
TPR.G23815 Trifolium pratense
TPR.G31236 Trifolium pratense
TPR.G31845 Trifolium pratense
TPR.G31850 Trifolium pratense
TPR.G37621 Trifolium pratense
TPR.G39538 Trifolium pratense
TPR.G4323 Trifolium pratense
TPR.G4331 Trifolium pratense
TWI15G0648 Tripterygium wilfordii
TWI15G0655 Tripterygium wilfordii
TWI38G1264 Tripterygium wilfordii
TWI38G2090 Tripterygium wilfordii
TWI63G0018 Tripterygium wilfordii
unitig_748.g7492 Utricularia gibba
VMungo0251G2606 Vigna mungo
VMungo0464G0843 Vigna mungo
VMungo1309G1992 Vigna mungo
VMungo1309G2732 Vigna mungo
Zm00001eb070980 Zea mays

User provided reference genes

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