Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p42240 Brassica napus
A03p00940 Brassica napus
A03p35880 Brassica napus
A05p39420 Brassica napus
A10p32870 Brassica napus
Aa31LG1G22050 Aethionema arabicum
Aa31LG3G2050 Aethionema arabicum
Aa31sc350G40 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5698 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5702 Anthoceros agrestis
Actinidia11234 Actinidia chinensis
Actinidia19723 Actinidia chinensis
Actinidia22370 Actinidia chinensis
Ah.02g116680 Amaranthus hybridus
Ah.11g051280 Amaranthus hybridus
Ah.11g051300 Amaranthus hybridus
AL1G49910 Arabidopsis lyrata
AL3G20840 Arabidopsis lyrata
AL4G15460 Arabidopsis lyrata
AL6G12140 Arabidopsis lyrata
Aqoxy262s001 Aquilegia oxysepala
Aqoxy5G01198 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.24ZAAH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.32UYYJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CTFV50 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DP9EUT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K0ENTT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TUBV7Y Arachis hypogaea
AT3G09630 Arabidopsis thaliana
AT5G02870 Arabidopsis thaliana
ATR0326G026 Amborella trichopoda
ATR0594G179 Amborella trichopoda
Atru.chr1.1521 Acer truncatum
Atru.chr1.1525 Acer truncatum
Atru.chr1.1528 Acer truncatum
Atru.chr8.2546 Acer truncatum
AUR62014253 Chenopodium quinoa
AUR62014254 Chenopodium quinoa
AUR62015238 Chenopodium quinoa
AUR62029620 Chenopodium quinoa
AUR62042922 Chenopodium quinoa
BcaB01g05871 Brassica carinata
BcaB03g11592 Brassica carinata
BcaB07g31687 Brassica carinata
BcaC01g04240 Brassica carinata
BcaC05g29689 Brassica carinata
BcaC06g32016 Brassica carinata
BcaC09g48032 Brassica carinata
BcaC09g48134 Brassica carinata
BcaC09g49914 Brassica carinata
BolC1t05444H Brassica oleracea
BolC3t12681H Brassica oleracea
BolC3t16623H Brassica oleracea
BolC3t17423H Brassica oleracea
BolC5t34497H Brassica oleracea
BolC9t60114H Brassica oleracea
BraA01t04292Z Brassica rapa
BraA03t09476Z Brassica rapa
BraA03t10427Z Brassica rapa
BraA03t12761Z Brassica rapa
BraA05t22723Z Brassica rapa
BraA10t45324Z Brassica rapa
C01p31340 Brassica napus
C03p01220 Brassica napus
C03p43540 Brassica napus
C05p58450 Brassica napus
C09p73800 Brassica napus
CAN.G350.42 Capsicum annuum
CAN.G933.12 Capsicum annuum
CANSAT80G2731 Cannabis sativa
CARHR084040 Cardamine hirsuta
CARHR117040 Cardamine hirsuta
CARHR117050 Cardamine hirsuta
CARHR117070 Cardamine hirsuta
CARHR210450 Cardamine hirsuta
CARHR210460 Cardamine hirsuta
Carub.0003s0872 Capsella rubella
Carub.0006s0168 Capsella rubella
Ca_11900_v3 Cicer arietinum L.
Ca_25027_v3 Cicer arietinum L.
CBR_g21131 Chara braunii
Cc00_g25350 Coffea canephora
Cc00_g27740 Coffea canephora
Cc00_g28940 Coffea canephora
Cc00_g30790 Coffea canephora
Cc03_g11770 Coffea canephora
Cc07_g20470 Coffea canephora
Cc09_g09060 Coffea canephora
Cc11_g00820 Coffea canephora
CDE02G1827 Ceratophyllum demersum
CDE05G0130 Ceratophyllum demersum
CDE05G1608 Ceratophyllum demersum
CDE07G0380 Ceratophyllum demersum
CDE09G0083 Ceratophyllum demersum
Cfa010016 Carpinus fangiana
Cfa017497 Carpinus fangiana
Ciclev10011875m.g Citrus clementina
Ciclev10011878m.g Citrus clementina
CiPaw.09G162900 Carya illinoinensis
CiPaw.09G181000 Carya illinoinensis
CiPaw.10G122400 Carya illinoinensis
CiPaw.10G138000 Carya illinoinensis
ClCG04G008800 Citrullus lanatus
ClCG10G020630 Citrullus lanatus
COL.COLO4_10995 Corchorus olitorius
COL.COLO4_27096 Corchorus olitorius
Cpa.g.sc10.79 Carica papaya
Cpa.g.sc10.82 Carica papaya
Cpa.g.sc114.56 Carica papaya
Cre09.g397697 Chlamydomonas reinhardtii
CsaV3_3G035460 Cucumis sativus L.
CsaV3_4G024340 Cucumis sativus L.
CSS0033228 Camellia sinensis var. sinensis
DCAR_014960 Daucus carota
DCAR_017723 Daucus carota
Dinv06351 Davidia involucrata
Dinv09811 Davidia involucrata
Dinv34875 Davidia involucrata
Dinv35702 Davidia involucrata
Duzib093G2050 Durio zibethinus
Duzib106G0158 Durio zibethinus
Duzib147G0107 Durio zibethinus
Duzib264G0270 Durio zibethinus
ECA232G4581 Erigeron canadensis
ECA238G0829 Erigeron canadensis
ECA238G3833 Erigeron canadensis
EL10Ac3g07069 Beta vulgaris
EL10Ac5g10668 Beta vulgaris
Eucgr.D01093 Eucalyptus grandis
Eucgr.K03205 Eucalyptus grandis
FAN02G1718 Fragaria x ananassa
FAN02G2168 Fragaria x ananassa
FAN03G2344 Fragaria x ananassa
FAN05G2702 Fragaria x ananassa
FAN07G2902 Fragaria x ananassa
FAN09G0271 Fragaria x ananassa
FAN12G3191 Fragaria x ananassa
FAN12G4005 Fragaria x ananassa
FAN14G1118 Fragaria x ananassa
FAN14G5146 Fragaria x ananassa
FAN17G1909 Fragaria x ananassa
FAN21G1321 Fragaria x ananassa
FAN22G0172 Fragaria x ananassa
FvH4_4g07470 Fragaria vesca
FvH4_6g15170 Fragaria vesca
Glyma.03G177400 Glycine max
Glyma.10G048600 Glycine max
Glyma.13G136400 Glycine max
Glyma.19G178100 Glycine max
Gohir.A01G217800 Gossypium hirsutum
Gohir.A04G076900 Gossypium hirsutum
Gohir.A11G325300 Gossypium hirsutum
Gohir.A13G084800 Gossypium hirsutum
Gohir.D01G206700 Gossypium hirsutum
Gohir.D04G116000 Gossypium hirsutum
Gohir.D11G344300 Gossypium hirsutum
Gohir.D13G096200 Gossypium hirsutum
Gorai.001G248400 Gossypium raimondii
Gorai.002G251600 Gossypium raimondii
Gorai.007G374700 Gossypium raimondii
Gorai.009G420600 Gossypium raimondii
GSVIVG01025478001 Vitis vinifera
GSVIVG01025547001 Vitis vinifera
HanXRQChr05g0148561 Helianthus annuus
HanXRQChr14g0445541 Helianthus annuus
HanXRQChr14g0450481 Helianthus annuus
HanXRQChr15g0484211 Helianthus annuus
HanXRQChr16g0510931 Helianthus annuus
HanXRQChr17g0562631 Helianthus annuus
Haze_20665 Corylus avellana
Haze_23376 Corylus avellana
Haze_26589 Corylus avellana
Hma1.2p1_0111F.1_g053770 Hydrangea macrophylla
Hma1.2p1_0350F.1_g132720 Hydrangea macrophylla
Hma1.2p1_0958F.1_g241530 Hydrangea macrophylla
HPP92_019522 Vanilla planifolia
Hund06828 Selenicereus undatus
Hund20146 Selenicereus undatus
Lalb_Chr01g0019061 Lupinus albus
Lalb_Chr02g0153611 Lupinus albus
Lalb_Chr20g0112921 Lupinus albus
Lalb_Chr21g0314621 Lupinus albus
Lalb_Chr25g0289281 Lupinus albus
Lj1g0013488 Lotus japonicus
Lj3C978T10 Lonicera japonica
Lj5g0001564 Lotus japonicus
Lsat_1_v5_gn_2_67821 Lactuca sativa
Lsat_1_v5_gn_4_141681 Lactuca sativa
Manes.08G002600 Manihot esculenta
Manes.09G079909 Manihot esculenta
Manes.09G080000 Manihot esculenta
Mapoly0116s0033 Marchantia polymorpha
MBI05_g24573_MAGBIO Magnolia biondii
MBI14_g31824_MAGBIO Magnolia biondii
MCO08G206 Micromonas commoda
MD12G1126000 Malus domestica
MD16G1251600 Malus domestica
Medtr1g045410 Medicago truncatula
Medtr1g066990 Medicago truncatula
Medtr5g025120 Medicago truncatula
MELO3C009306.2 Cucumis melo
MELO3C014262.2 Cucumis melo
Migut.E01412 Erythranthe guttata
Migut.J00407 Erythranthe guttata
Migut.L01656 Erythranthe guttata
MSTRG.19132 Avicennia marina
MSTRG.26731 Avicennia marina
MSTRG.5714 Avicennia marina
Nitab4.5_0000202g0450 Nicotiana tabacum
Nitab4.5_0000754g0050 Nicotiana tabacum
Nitab4.5_0000848g0210 Nicotiana tabacum
Nitab4.5_0003820g0030 Nicotiana tabacum
Nitab4.5_0006152g0010 Nicotiana tabacum
Nitab4.5_0006929g0010 Nicotiana tabacum
Nn1g02412 Nelumbo nucifera
Nn1g03747 Nelumbo nucifera
Nn2g10626 Nelumbo nucifera
Nn2g13793 Nelumbo nucifera
Nn2g13796 Nelumbo nucifera
Nn2g15297 Nelumbo nucifera
Nn2g15626 Nelumbo nucifera
Nn4g25077 Nelumbo nucifera
Oeu018423.1 Olea europaea
Oeu019681.1 Olea europaea
Oeu029106.1 Olea europaea
Oeu035146.1 Olea europaea
Oeu039379.1 Olea europaea
Oeu060082.1 Olea europaea
Os03g0796501 Oryza sativa ssp. japonica
Os07g0180900 Oryza sativa ssp. japonica
Peaxi162Scf00005g05112 Petunia axillaris
Peaxi162Scf00146g01316 Petunia axillaris
PGR004G0117 Punica granatum
PGSC0003DMG400011047 Solanum tuberosum
PGSC0003DMG400017608 Solanum tuberosum
PGSC0003DMG400027903 Solanum tuberosum
Phvul.001G174300 Phaseolus vulgaris
Phvul.007G162900 Phaseolus vulgaris
Potri.006G132450 Populus trichocarpa
Potri.006G132551 Populus trichocarpa
Potri.016G084400 Populus trichocarpa
Pp3c20_19140 Physcomitrium patens
Pp3c23_6290 Physcomitrium patens
Pp3c23_9380 Physcomitrium patens
Pp3c24_3760 Physcomitrium patens
PRCOL_00001135 Prasinoderma coloniale
Prupe.1G078100 Prunus persica
Prupe.6G242600 Prunus persica
Psat0s2697g0040 Pisum sativum
Psat2g146000 Pisum sativum
Psat6g067240 Pisum sativum
Psat6g107520 Pisum sativum
Psat6g130360 Pisum sativum
Psat6g182000 Pisum sativum
PSO013G0089 Papaver somniferum
PSO013G0143 Papaver somniferum
PSO013G0358 Papaver somniferum
PSO063G3003 Papaver somniferum
PSO063G7559 Papaver somniferum
PSO104G0151 Papaver somniferum
PSO339G6362 Papaver somniferum
PSO384G4714 Papaver somniferum
PSO782G4636 Papaver somniferum
QL07p045455 Quercus lobata
QL07p045476 Quercus lobata
RcHm_v2.0_Chr3g0468471 Rosa chinensis
RcHm_v2.0_Chr6g0270851 Rosa chinensis
RhsimUnG0118900 Rhododendron simsii
Sabra06G0103900 Salix brachista
Sabra06G0104000 Salix brachista
Sabra16G0091300 Salix brachista
SalBow4G0766 Salvia bowleyana
SalBow4G1915 Salvia bowleyana
Sc01g0003630 Simmondsia chinensis
Sc20g0004150 Simmondsia chinensis
Sed0000170 Sechium edule
Sed0012327 Sechium edule
Sed0013566 Sechium edule
Sed0018310 Sechium edule
SGA_v2.0_scaffold126G33883 Striga asiatica
SGA_v2.0_scaffold35G14173 Striga asiatica
SGA_v2.0_scaffold71G23778 Striga asiatica
SGA_v2.0_scaffold75G24889 Striga asiatica
SHI12591 Sapria himalayana
SMO356G0186 Selaginella moellendorffii
Solyc09g007250.4 Solanum lycopersicum
Solyc10g084350.2 Solanum lycopersicum
Solyc10g086010.2 Solanum lycopersicum
Sopen09g002120 Solanum pennellii
Sopen10g033800 Solanum pennellii
Sopen10g035380 Solanum pennellii
Sp3g07960 Schrenkiella parvula
Sp4g03700 Schrenkiella parvula
Sp6g39720 Schrenkiella parvula
TAR369G0113 Trochodendron aralioides
TAR623G1273 Trochodendron aralioides
TAR633G1704 Trochodendron aralioides
THA.LOC104802912 Tarenaya hassleriana
THA.LOC104816315 Tarenaya hassleriana
THA.LOC104820861 Tarenaya hassleriana
THA.LOC104823244 Tarenaya hassleriana
THA.LOC104826986 Tarenaya hassleriana
Thecc.01G115000 Theobroma cacao
Thecc.05G052800 Theobroma cacao
Thhalv10000184m.g Eutrema salsugineum
Thhalv10013700m.g Eutrema salsugineum
Thhalv10020851m.g Eutrema salsugineum
TPR.G24003 Trifolium pratense
TPR.G33770 Trifolium pratense
TPR.G35667 Trifolium pratense
TWI53G1013 Tripterygium wilfordii
TWI74G0616 Tripterygium wilfordii
TWI77G0468 Tripterygium wilfordii
unitig_26.g9200 Utricularia gibba
unitig_26.g9212 Utricularia gibba
unitig_749.g14265 Utricularia gibba
vmacro20066 Vaccinium macrocarpon
VMungo0720G1051 Vigna mungo
VMungo1383G1327 Vigna mungo
Zm00001eb060730 Zea mays
Zm00001eb116930 Zea mays
Zm00001eb212960 Zea mays
Zm00001eb301420 Zea mays

User provided reference genes

Program Settings