Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p33810 Brassica napus
A08p34580 Brassica napus
A08p34590 Brassica napus
A09p17220 Brassica napus
Aa31LG1G5670 Aethionema arabicum
Aa31LG2G9830 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.502 Anthoceros agrestis
Actinidia02523 Actinidia chinensis
Actinidia08150 Actinidia chinensis
Actinidia13494 Actinidia chinensis
Actinidia15066 Actinidia chinensis
Actinidia16894 Actinidia chinensis
Actinidia27793 Actinidia chinensis
Actinidia35496 Actinidia chinensis
Actinidia35497 Actinidia chinensis
Ah.02g130080 Amaranthus hybridus
Ah.02g130090 Amaranthus hybridus
Ah.03g132840 Amaranthus hybridus
Ah.07g203780 Amaranthus hybridus
AL1G19950 Arabidopsis lyrata
AL1G21530 Arabidopsis lyrata
AL1G21630 Arabidopsis lyrata
AL2G15720 Arabidopsis lyrata
Aqoxy3G01074 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.JT8J6F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QW39PF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SHHZ9W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SP7CPF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T1S7CJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W749QJ Arachis hypogaea
AT1G09430 Arabidopsis thaliana
AT1G10670 Arabidopsis thaliana
AT1G60810 Arabidopsis thaliana
ATR0796G045 Amborella trichopoda
ATR1091G010 Amborella trichopoda
ATR1091G109 Amborella trichopoda
Atru.chr11.2071 Acer truncatum
Atru.chr12.1598 Acer truncatum
Atru.chr4.1555 Acer truncatum
Atru.chr4.2100 Acer truncatum
Atru.chr4.2115 Acer truncatum
AUR62002566 Chenopodium quinoa
AUR62005413 Chenopodium quinoa
AUR62014075 Chenopodium quinoa
AUR62029988 Chenopodium quinoa
BcaB03g13292 Brassica carinata
BcaB03g13294 Brassica carinata
BcaC04g22273 Brassica carinata
BcaC07g38499 Brassica carinata
BcaC07g38584 Brassica carinata
BcaC07g38623 Brassica carinata
BcaNung05344 Brassica carinata
BolC8t48910H Brassica oleracea
BolC8t49025H Brassica oleracea
BolC9t55042H Brassica oleracea
BraA08t35369Z Brassica rapa
BraA09t37354Z Brassica rapa
C08p12750 Brassica napus
C08p12790 Brassica napus
C08p12850 Brassica napus
C08p13910 Brassica napus
C09p21320 Brassica napus
CAN.G1374.13 Capsicum annuum
CAN.G438.88 Capsicum annuum
CAN.G507.14 Capsicum annuum
CAN.G695.5 Capsicum annuum
CANSAT01G1577 Cannabis sativa
CANSAT54G2728 Cannabis sativa
CARHR009400 Cardamine hirsuta
CARHR010850 Cardamine hirsuta
CARHR051820 Cardamine hirsuta
CARHR113010 Cardamine hirsuta
Carub.0001s0877 Capsella rubella
Carub.0001s1016 Capsella rubella
Carub.0002s0451 Capsella rubella
Ca_03138_v3 Cicer arietinum L.
Ca_03335_v3 Cicer arietinum L.
CBR_g6689 Chara braunii
Cc02_g35620 Coffea canephora
Cc11_g15380 Coffea canephora
CDE05G0530 Ceratophyllum demersum
CDE08G1411 Ceratophyllum demersum
Cfa009180 Carpinus fangiana
Cfa021199 Carpinus fangiana
Cfa022239 Carpinus fangiana
Ciclev10013702m.g Citrus clementina
Ciclev10031633m.g Citrus clementina
CiPaw.05G186700 Carya illinoinensis
CiPaw.06G070000 Carya illinoinensis
CiPaw.07G034400 Carya illinoinensis
CiPaw.08G152400 Carya illinoinensis
ClCG03G017830 Citrullus lanatus
ClCG08G017860 Citrullus lanatus
COL.COLO4_05502 Corchorus olitorius
COL.COLO4_24214 Corchorus olitorius
Cpa.g.sc48.211 Carica papaya
Cpa.g.sc69.74 Carica papaya
Cre05.g241850 Chlamydomonas reinhardtii
CsaV3_1G038000 Cucumis sativus L.
CsaV3_2G024770 Cucumis sativus L.
CSS0011795 Camellia sinensis var. sinensis
CSS0012911 Camellia sinensis var. sinensis
CSS0015271 Camellia sinensis var. sinensis
CSS0033750 Camellia sinensis var. sinensis
DCAR_029803 Daucus carota
DCAR_031119 Daucus carota
Dinv29448 Davidia involucrata
Dinv30933 Davidia involucrata
Duzib151G0351 Durio zibethinus
Duzib170G0966 Durio zibethinus
Duzib177G0158 Durio zibethinus
Duzib248G1672 Durio zibethinus
Duzib268G0328 Durio zibethinus
ECA234G3088 Erigeron canadensis
ECA246G2900 Erigeron canadensis
EL10Ac3g06267 Beta vulgaris
EL10Ac6g13707 Beta vulgaris
Eucgr.B03307 Eucalyptus grandis
Eucgr.G02039 Eucalyptus grandis
FAN01G0356 Fragaria x ananassa
FAN05G0106 Fragaria x ananassa
FAN05G5804 Fragaria x ananassa
FAN06G0136 Fragaria x ananassa
FAN06G0658 Fragaria x ananassa
FAN06G1062 Fragaria x ananassa
FAN06G4387 Fragaria x ananassa
FAN07G1448 Fragaria x ananassa
FAN07G1715 Fragaria x ananassa
FAN12G0408 Fragaria x ananassa
FAN12G3247 Fragaria x ananassa
FAN12G3509 Fragaria x ananassa
FAN17G0577 Fragaria x ananassa
FAN17G2938 Fragaria x ananassa
FAN22G2092 Fragaria x ananassa
FAN27G1254 Fragaria x ananassa
FvH4_1g16730 Fragaria vesca
FvH4_3g10370 Fragaria vesca
FvH4_3g27510 Fragaria vesca
FvH4_4g21220 Fragaria vesca
FvH4_4g32950 Fragaria vesca
FvH4_5g03871 Fragaria vesca
FvH4_6g23700 Fragaria vesca
FvH4_6g23720 Fragaria vesca
FvH4_6g44440 Fragaria vesca
FvH4_7g05540 Fragaria vesca
FvH4_7g28120 Fragaria vesca
Glyma.01G028900 Glycine max
Glyma.02G036300 Glycine max
Glyma.03G228900 Glycine max
Glyma.08G159900 Glycine max
Glyma.15G267000 Glycine max
Glyma.19G226100 Glycine max
Gohir.A04G136100 Gossypium hirsutum
Gohir.A11G275100 Gossypium hirsutum
Gohir.A12G143900 Gossypium hirsutum
Gohir.D04G179200 Gossypium hirsutum
Gohir.D11G285500 Gossypium hirsutum
Gohir.D12G148600 Gossypium hirsutum
Gorai.007G308700 Gossypium raimondii
Gorai.008G159900 Gossypium raimondii
Gorai.012G172300 Gossypium raimondii
GSVIVG01013785001 Vitis vinifera
GSVIVG01031310001 Vitis vinifera
HanXRQChr05g0131921 Helianthus annuus
HanXRQChr12g0384281 Helianthus annuus
HanXRQChr14g0446711 Helianthus annuus
HanXRQChr16g0529661 Helianthus annuus
HanXRQChr16g0529681 Helianthus annuus
Haze_04008 Corylus avellana
Haze_12214 Corylus avellana
Hma1.2p1_0028F.1_g017730 Hydrangea macrophylla
Hma1.2p1_0160F.1_g071110 Hydrangea macrophylla
Hma1.2p1_1243F.1_g269953 Hydrangea macrophylla
Hma1.2p1_1553F.1_g290380 Hydrangea macrophylla
HPP92_010876 Vanilla planifolia
Hund06009 Selenicereus undatus
Hund22620 Selenicereus undatus
Hund25370 Selenicereus undatus
Lalb_Chr05g0216721 Lupinus albus
Lalb_Chr09g0326271 Lupinus albus
Lalb_Chr16g0382131 Lupinus albus
Lalb_Chr18g0046171 Lupinus albus
Lalb_Chr20g0108311 Lupinus albus
Lj1g0014848 Lotus japonicus
Lj2g0009041 Lotus japonicus
Lj3C1054T10 Lonicera japonica
Lj3g0011642 Lotus japonicus
Lj6A808T45 Lonicera japonica
Lj6C699T9 Lonicera japonica
Lju99C8G18 Lonicera japonica
Lsat_1_v5_gn_3_28540 Lactuca sativa
Lsat_1_v5_gn_4_5241 Lactuca sativa
Lsat_1_v5_gn_9_78860 Lactuca sativa
Manes.09G180100 Manihot esculenta
Manes.12G026000 Manihot esculenta
Manes.13G027700 Manihot esculenta
Mapoly0058s0103 Marchantia polymorpha
MBI18_g28907_MAGBIO Magnolia biondii
MBI19_g32712_MAGBIO Magnolia biondii
MD13G1095200 Malus domestica
MD13G1143800 Malus domestica
MD13G1144700 Malus domestica
MD16G1096300 Malus domestica
MD16G1132600 Malus domestica
MD16G1138900 Malus domestica
MD16G1146700 Malus domestica
Medtr2g062920 Medicago truncatula
Medtr5g033920 Medicago truncatula
MELO3C010675.2 Cucumis melo
MELO3C015245.2 Cucumis melo
Migut.L01465 Erythranthe guttata
Migut.N00965 Erythranthe guttata
MSTRG.27915 Avicennia marina
MSTRG.582 Avicennia marina
MSTRG.7909 Avicennia marina
Nitab4.5_0000031g0530 Nicotiana tabacum
Nitab4.5_0000338g0010 Nicotiana tabacum
Nitab4.5_0002783g0070 Nicotiana tabacum
Nitab4.5_0004112g0010 Nicotiana tabacum
Nitab4.5_0006589g0040 Nicotiana tabacum
Nn3g16818 Nelumbo nucifera
Nn3g21878 Nelumbo nucifera
Nn4g22711 Nelumbo nucifera
Nn4g25413 Nelumbo nucifera
Nn5g27903 Nelumbo nucifera
Nn7g38210 Nelumbo nucifera
Oeu031758.1 Olea europaea
Oeu031759.1 Olea europaea
Oeu056412.1 Olea europaea
Os11g0693800 Oryza sativa ssp. japonica
Os11g0696200 Oryza sativa ssp. japonica
Os12g0566300 Oryza sativa ssp. japonica
Peaxi162Scf00158g00011 Petunia axillaris
Peaxi162Scf00357g00428 Petunia axillaris
PGR031G3324 Punica granatum
PGR102G1878 Punica granatum
PGSC0003DMG400013485 Solanum tuberosum
PGSC0003DMG400025587 Solanum tuberosum
PGSC0003DMG400029179 Solanum tuberosum
PGSC0003DMG403018293 Solanum tuberosum
Phvul.001G222900 Phaseolus vulgaris
Phvul.002G064600 Phaseolus vulgaris
Phvul.005G043500 Phaseolus vulgaris
Potri.005G004900 Populus trichocarpa
Potri.008G188900 Populus trichocarpa
Potri.010G042700 Populus trichocarpa
Potri.013G004400 Populus trichocarpa
Pp3c1_16900 Physcomitrium patens
Pp3c2_3730 Physcomitrium patens
Prupe.1G108300 Prunus persica
Prupe.1G250100 Prunus persica
Prupe.4G254400 Prunus persica
Prupe.6G110400 Prunus persica
Psat1g139240 Pisum sativum
Psat2g102280 Pisum sativum
PSO017G0682 Papaver somniferum
PSO210G4896 Papaver somniferum
PSO478G0901 Papaver somniferum
QL03p009323 Quercus lobata
QL03p059234 Quercus lobata
RcHm_v2.0_Chr2g0117321 Rosa chinensis
RcHm_v2.0_Chr2g0117331 Rosa chinensis
RcHm_v2.0_Chr4g0426831 Rosa chinensis
RcHm_v2.0_Chr4g0441981 Rosa chinensis
RcHm_v2.0_Chr7g0181761 Rosa chinensis
Rhsim06G0118800 Rhododendron simsii
Rhsim11G0100000 Rhododendron simsii
Rhsim12G0043200 Rhododendron simsii
Rhsim12G0114000 Rhododendron simsii
Sabra05G0001500 Salix brachista
Sabra05G0001600 Salix brachista
Sabra05G0015600 Salix brachista
Sabra08G0143500 Salix brachista
Sabra10G0024700 Salix brachista
Sabra13G0003600 Salix brachista
SalBow2G2707 Salvia bowleyana
SalBow7G4682 Salvia bowleyana
Sc04g0009290 Simmondsia chinensis
Sc25g0001740 Simmondsia chinensis
Sed0011647 Sechium edule
Sed0025966 Sechium edule
SEGI_05260 Sequoiadendron giganteum
SEGI_08064 Sequoiadendron giganteum
SGA_v2.0_scaffold50G18429 Striga asiatica
SGA_v2.0_scaffold63G21707 Striga asiatica
SMO364G0555 Selaginella moellendorffii
Solyc01g101040.3 Solanum lycopersicum
Solyc04g039670.3 Solanum lycopersicum
Solyc05g005160.3 Solanum lycopersicum
Sopen01g044500 Solanum pennellii
Sopen04g016030 Solanum pennellii
Sopen05g001170 Solanum pennellii
Sp1g08040 Schrenkiella parvula
Sp1g09370 Schrenkiella parvula
Sp2g03900 Schrenkiella parvula
TAR362G0343 Trochodendron aralioides
TAR622G0144 Trochodendron aralioides
TAR629G1312 Trochodendron aralioides
THA.LOC104816846 Tarenaya hassleriana
THA.LOC104819384 Tarenaya hassleriana
Thecc.02G254600 Theobroma cacao
Thecc.04G252400 Theobroma cacao
Thecc.05G327800 Theobroma cacao
Thhalv10007711m.g Eutrema salsugineum
Thhalv10008114m.g Eutrema salsugineum
Thhalv10023479m.g Eutrema salsugineum
TPR.G3615 Trifolium pratense
TWI12G0271 Tripterygium wilfordii
TWI18G1380 Tripterygium wilfordii
TWI36G1336 Tripterygium wilfordii
unitig_8.g3148 Utricularia gibba
vmacro01151 Vaccinium macrocarpon
vmacro01616 Vaccinium macrocarpon
vmacro16221 Vaccinium macrocarpon
vmacro16224 Vaccinium macrocarpon
VMungo1080G1323 Vigna mungo
VMungo1215G1656 Vigna mungo
VMungo1383G0175 Vigna mungo
Zm00001eb032740 Zea mays
Zm00001eb113130 Zea mays
Zm00001eb136880 Zea mays
Zm00001eb164780 Zea mays
Zm00001eb282560 Zea mays

User provided reference genes

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