Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p03680 Brassica napus
A08p03720 Brassica napus
A08p05710 Brassica napus
A09p55330 Brassica napus
A10p06480 Brassica napus
Aa31LG1G25170 Aethionema arabicum
Aa31LG5G9540 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1965 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2610 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.717 Anthoceros agrestis
Actinidia09349 Actinidia chinensis
Actinidia27086 Actinidia chinensis
Actinidia34580 Actinidia chinensis
Ah.05g168720 Amaranthus hybridus
Ah.08g210790 Amaranthus hybridus
Ah.13g073780 Amaranthus hybridus
AL1G53470 Arabidopsis lyrata
AL4G18840 Arabidopsis lyrata
AL4G42160 Arabidopsis lyrata
Aqoxy2G04158 Aquilegia oxysepala
Aqoxy5G00695 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.22JQPB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CC0P3D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CT5VFU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GMG9S1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IU1E1F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QH0XVM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZB69EK Arachis hypogaea
AT1G47290 Arabidopsis thaliana
AT2G26260 Arabidopsis thaliana
AT2G43420 Arabidopsis thaliana
ATR0681G186 Amborella trichopoda
ATR0743G142 Amborella trichopoda
ATR0815G032 Amborella trichopoda
ATR1134G002 Amborella trichopoda
Atru.chr4.1263 Acer truncatum
Atru.chr7.1819 Acer truncatum
AUR62002350 Chenopodium quinoa
AUR62023837 Chenopodium quinoa
AUR62023839 Chenopodium quinoa
BcaB04g17530 Brassica carinata
BcaB07g33844 Brassica carinata
BcaB08g35278 Brassica carinata
BcaC01g03265 Brassica carinata
BcaC02g12395 Brassica carinata
BcaC02g12396 Brassica carinata
BcaC07g37221 Brassica carinata
BcaC07g40831 Brassica carinata
BcaC08g42942 Brassica carinata
BolC4t22163H Brassica oleracea
BolC6t35312H Brassica oleracea
BolC8t47487H Brassica oleracea
BolC8t51402H Brassica oleracea
BraA08t32400Z Brassica rapa
BraA09t40936Z Brassica rapa
BraA10t42908Z Brassica rapa
C03p54210 Brassica napus
C06p01850 Brassica napus
C08p06410 Brassica napus
C08p38270 Brassica napus
CAN.G215.15 Capsicum annuum
CAN.G8.33 Capsicum annuum
CAN.G809.57 Capsicum annuum
CAN.G809.58 Capsicum annuum
CAN.G809.61 Capsicum annuum
CANSAT54G1311 Cannabis sativa
CANSAT78G0997 Cannabis sativa
CARHR036900 Cardamine hirsuta
CARHR036910 Cardamine hirsuta
CARHR115100 Cardamine hirsuta
CARHR138510 Cardamine hirsuta
Carub.0001s3610 Capsella rubella
Carub.0004s0612 Capsella rubella
Carub.0004s2589 Capsella rubella
Ca_15805_v3 Cicer arietinum L.
Ca_20800_v3 Cicer arietinum L.
Cc03_g10730 Coffea canephora
Cc03_g12100 Coffea canephora
CDE06G0271 Ceratophyllum demersum
CDE07G0674 Ceratophyllum demersum
CDE07G1582 Ceratophyllum demersum
Cfa015196 Carpinus fangiana
Cfa015197 Carpinus fangiana
Cfa023532 Carpinus fangiana
Cfa024413 Carpinus fangiana
Ciclev10007884m.g Citrus clementina
Ciclev10019433m.g Citrus clementina
Ciclev10023716m.g Citrus clementina
CiPaw.01G096100 Carya illinoinensis
CiPaw.04G076700 Carya illinoinensis
CiPaw.04G076800 Carya illinoinensis
ClCG05G007220 Citrullus lanatus
ClCG08G009720 Citrullus lanatus
COL.COLO4_10091 Corchorus olitorius
COL.COLO4_21163 Corchorus olitorius
Cpa.g.sc82.10 Carica papaya
Cpa.g.sc82.11 Carica papaya
Cpa.g.sc82.13 Carica papaya
Cpa.g.sc9.317 Carica papaya
Cre10.g442200 Chlamydomonas reinhardtii
Cre12.g518650 Chlamydomonas reinhardtii
CsaV3_3G015980 Cucumis sativus L.
CsaV3_6G031840 Cucumis sativus L.
CSS0001991 Camellia sinensis var. sinensis
CSS0003399 Camellia sinensis var. sinensis
CSS0013735 Camellia sinensis var. sinensis
CSS0029761 Camellia sinensis var. sinensis
CSS0037664 Camellia sinensis var. sinensis
CSS0041348 Camellia sinensis var. sinensis
DCAR_001245 Daucus carota
DCAR_003728 Daucus carota
DCAR_014536 Daucus carota
DCAR_027529 Daucus carota
Dinv05081 Davidia involucrata
Dinv16952 Davidia involucrata
Dinv29527 Davidia involucrata
Dinv44156 Davidia involucrata
Duzib150G1690 Durio zibethinus
Duzib151G0202 Durio zibethinus
Duzib168G0204 Durio zibethinus
ECA232G0089 Erigeron canadensis
ECA232G4035 Erigeron canadensis
ECA238G4006 Erigeron canadensis
ECA240G0861 Erigeron canadensis
ECA246G3400 Erigeron canadensis
ECA247G2946 Erigeron canadensis
EL10Ac3g06012 Beta vulgaris
EL10Ac9g21970 Beta vulgaris
Eucgr.C00745 Eucalyptus grandis
FAN11G2953 Fragaria x ananassa
FAN15G1351 Fragaria x ananassa
FAN20G3146 Fragaria x ananassa
FAN27G1780 Fragaria x ananassa
FvH4_2g36970 Fragaria vesca
Glyma.03G002500 Glycine max
Glyma.06G058200 Glycine max
Glyma.07G107800 Glycine max
Glyma.11G126300 Glycine max
Glyma.12G050900 Glycine max
Glyma.12G159100 Glycine max
Gohir.A02G011400 Gossypium hirsutum
Gohir.A05G322600 Gossypium hirsutum
Gohir.A06G080600 Gossypium hirsutum
Gohir.A10G140400 Gossypium hirsutum
Gohir.D01G069300 Gossypium hirsutum
Gohir.D02G012200 Gossypium hirsutum
Gohir.D05G325200 Gossypium hirsutum
Gohir.D06G080100 Gossypium hirsutum
Gohir.D10G126400 Gossypium hirsutum
Gorai.005G015600 Gossypium raimondii
Gorai.009G349400 Gossypium raimondii
Gorai.010G093200 Gossypium raimondii
Gorai.011G139300 Gossypium raimondii
GSVIVG01010844001 Vitis vinifera
GSVIVG01035499001 Vitis vinifera
HanXRQChr02g0042821 Helianthus annuus
HanXRQChr02g0046911 Helianthus annuus
HanXRQChr13g0419901 Helianthus annuus
HanXRQChr14g0433391 Helianthus annuus
Haze_01456 Corylus avellana
Haze_13630 Corylus avellana
Haze_13632 Corylus avellana
Hma1.2p1_0002F.1_g003380 Hydrangea macrophylla
HPP92_001319 Vanilla planifolia
HPP92_011678 Vanilla planifolia
HPP92_011698 Vanilla planifolia
Hund03176 Selenicereus undatus
Hund07042 Selenicereus undatus
Hund12409 Selenicereus undatus
Lalb_Chr01g0003081 Lupinus albus
Lalb_Chr08g0244671 Lupinus albus
Lalb_Chr23g0268071 Lupinus albus
Lj1g0002250 Lotus japonicus
Lj3A1011T28 Lonicera japonica
Lj3A82T19 Lonicera japonica
Lj3C1011G3 Lonicera japonica
Lj3C81T0 Lonicera japonica
Lj3g0021053 Lotus japonicus
Lj6C107G5 Lonicera japonica
Lsat_1_v5_gn_1_4680 Lactuca sativa
Lsat_1_v5_gn_2_38560 Lactuca sativa
Lsat_1_v5_gn_2_9901 Lactuca sativa
Lsat_1_v5_gn_3_100860 Lactuca sativa
Lsat_1_v5_gn_3_100921 Lactuca sativa
Lsat_1_v5_gn_3_100941 Lactuca sativa
Lsat_1_v5_gn_3_109960 Lactuca sativa
Lsat_1_v5_gn_4_130500 Lactuca sativa
Lsat_1_v5_gn_4_178301 Lactuca sativa
Lsat_1_v5_gn_5_98861 Lactuca sativa
Lsat_1_v5_gn_8_115920 Lactuca sativa
Lsat_1_v5_gn_8_138540 Lactuca sativa
Lsat_1_v5_gn_9_42821 Lactuca sativa
Manes.04G038600 Manihot esculenta
Manes.16G087200 Manihot esculenta
Mapoly0001s0030 Marchantia polymorpha
MBI11_g10481_MAGBIO Magnolia biondii
MBI13_g13883_MAGBIO Magnolia biondii
MBI13_g27164_MAGBIO Magnolia biondii
MBI13_g27165_MAGBIO Magnolia biondii
MCO03G222 Micromonas commoda
MD04G1045100 Malus domestica
MD08G1046500 Malus domestica
MD13G1270400 Malus domestica
MD13G1270500 Malus domestica
Medtr3g105440 Medicago truncatula
Medtr4g068110 Medicago truncatula
MELO3C006796.2 Cucumis melo
MELO3C011497.2 Cucumis melo
Migut.A00328 Erythranthe guttata
Migut.E01468 Erythranthe guttata
Migut.G01318 Erythranthe guttata
Migut.G01319 Erythranthe guttata
MSTRG.13980 Avicennia marina
MSTRG.13981 Avicennia marina
MSTRG.25846 Avicennia marina
Nitab4.5_0000138g0250 Nicotiana tabacum
Nitab4.5_0000389g0120 Nicotiana tabacum
Nitab4.5_0001557g0060 Nicotiana tabacum
Nitab4.5_0003602g0060 Nicotiana tabacum
Nitab4.5_0004228g0040 Nicotiana tabacum
Nitab4.5_0007647g0010 Nicotiana tabacum
Nn1g09580 Nelumbo nucifera
Nn1g09700 Nelumbo nucifera
Nn3g20138 Nelumbo nucifera
Oeu015824.1 Olea europaea
Oeu015825.1 Olea europaea
Oeu024473.1 Olea europaea
Oeu027752.1 Olea europaea
Oeu032503.1 Olea europaea
Os03g0404800 Oryza sativa ssp. japonica
Os03g0405000 Oryza sativa ssp. japonica
Os09g0516500 Oryza sativa ssp. japonica
Peaxi162Scf00198g01529 Petunia axillaris
Peaxi162Scf00368g00814 Petunia axillaris
Peaxi162Scf00504g00036 Petunia axillaris
PGR083G2683 Punica granatum
PGR119G0989 Punica granatum
PGSC0003DMG400007309 Solanum tuberosum
PGSC0003DMG400014943 Solanum tuberosum
Phvul.009G084200 Phaseolus vulgaris
Phvul.011G053200 Phaseolus vulgaris
Potri.006G218400 Populus trichocarpa
Potri.007G131200 Populus trichocarpa
Pp3c5_12410 Physcomitrium patens
PRCOL_00002753 Prasinoderma coloniale
Prupe.1G198200 Prunus persica
Prupe.1G401700 Prunus persica
Psat0s2642g0120 Pisum sativum
Psat0s3617g0080 Pisum sativum
Psat5g214160 Pisum sativum
Psat7g209160 Pisum sativum
PSO063G0789 Papaver somniferum
PSO063G7639 Papaver somniferum
PSO210G2911 Papaver somniferum
PSO421G0064 Papaver somniferum
PSO782G0154 Papaver somniferum
QL05p010597 Quercus lobata
QL07p047387 Quercus lobata
QL09p003396 Quercus lobata
QL09p004522 Quercus lobata
QL10p050908 Quercus lobata
RcHm_v2.0_Chr4g0406951 Rosa chinensis
RcHm_v2.0_Chr6g0304791 Rosa chinensis
Rhsim03G0017900 Rhododendron simsii
Rhsim09G0022400 Rhododendron simsii
RhsimUnG0223700 Rhododendron simsii
Sabra06G0168400 Salix brachista
Sabra07G0106500 Salix brachista
SalBow3G3330 Salvia bowleyana
SalBow4G0515 Salvia bowleyana
SalBow8G3331 Salvia bowleyana
Sc17g0000190 Simmondsia chinensis
Sc25g0002620 Simmondsia chinensis
Sc25g0002790 Simmondsia chinensis
Sed0012590 Sechium edule
Sed0027421 Sechium edule
SEGI_01118 Sequoiadendron giganteum
SEGI_02128 Sequoiadendron giganteum
SEGI_13992 Sequoiadendron giganteum
SEGI_14775 Sequoiadendron giganteum
SEGI_22062 Sequoiadendron giganteum
SGA_v2.0_scaffold147G36314 Striga asiatica
SGA_v2.0_scaffold17G08155 Striga asiatica
SHI05858 Sapria himalayana
SMO351G0612 Selaginella moellendorffii
Solyc02g032330.3 Solanum lycopersicum
Solyc02g081730.3 Solanum lycopersicum
Solyc12g021130.2 Solanum lycopersicum
Sopen02g010690 Solanum pennellii
Sopen02g026330 Solanum pennellii
Sopen12g011000 Solanum pennellii
Sp1g34440 Schrenkiella parvula
Sp4g06500 Schrenkiella parvula
Sp4g25520 Schrenkiella parvula
TAR005G0001 Trochodendron aralioides
TAR005G0004 Trochodendron aralioides
TAR468G0003 Trochodendron aralioides
TAR468G0004 Trochodendron aralioides
TAR626G0442 Trochodendron aralioides
TAR633G2663 Trochodendron aralioides
THA.LOC104802316 Tarenaya hassleriana
THA.LOC104803571 Tarenaya hassleriana
THA.LOC104804450 Tarenaya hassleriana
THA.LOC104819910 Tarenaya hassleriana
THA.LOC104819911 Tarenaya hassleriana
Thecc.01G113100 Theobroma cacao
Thecc.04G175100 Theobroma cacao
Thecc.09G065800 Theobroma cacao
Thhalv10001381m.g Eutrema salsugineum
Thhalv10001949m.g Eutrema salsugineum
Thhalv10011495m.g Eutrema salsugineum
TPR.G21434 Trifolium pratense
TPR.G34253 Trifolium pratense
TWI34G0285 Tripterygium wilfordii
TWI38G1413 Tripterygium wilfordii
unitig_748.g8197 Utricularia gibba
vmacro00630 Vaccinium macrocarpon
vmacro09583 Vaccinium macrocarpon
vmacro22366 Vaccinium macrocarpon
vmacro22367 Vaccinium macrocarpon
VMungo1309G0101 Vigna mungo
VMungo1309G2976 Vigna mungo
Zm00001eb019480 Zea mays
Zm00001eb019510 Zea mays
Zm00001eb102790 Zea mays
Zm00001eb392940 Zea mays

User provided reference genes

Program Settings