Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p06200 Brassica napus
A03p10020 Brassica napus
A09p10450 Brassica napus
A10p19600 Brassica napus
A10p21090 Brassica napus
Aa31LG4G13330 Aethionema arabicum
Aa31LG8G12660 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2770 Anthoceros agrestis
Actinidia00331 Actinidia chinensis
Actinidia02419 Actinidia chinensis
Actinidia26359 Actinidia chinensis
Actinidia26360 Actinidia chinensis
Actinidia38707 Actinidia chinensis
Ah.01g024280 Amaranthus hybridus
Ah.09g224090 Amaranthus hybridus
AL3G45930 Arabidopsis lyrata
AL6G31910 Arabidopsis lyrata
Aqoxy120s001 Aquilegia oxysepala
Aqoxy120s002 Aquilegia oxysepala
Aqoxy120s003 Aquilegia oxysepala
Aqoxy5G01885 Aquilegia oxysepala
Aqoxy7G02451 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.FNDT39 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P396R6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P4FGTG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WHNG6D Arachis hypogaea
AT2G14255 Arabidopsis thaliana
AT5G20350 Arabidopsis thaliana
ATR0767G066 Amborella trichopoda
ATR0767G100 Amborella trichopoda
Atru.chr6.1394 Acer truncatum
Atru.chr7.2011 Acer truncatum
AUR62011227 Chenopodium quinoa
AUR62020007 Chenopodium quinoa
AUR62027066 Chenopodium quinoa
AUR62030907 Chenopodium quinoa
BcaB01g01298 Brassica carinata
BcaB01g04791 Brassica carinata
BcaB02g11532 Brassica carinata
BcaB05g22851 Brassica carinata
BcaB08g36495 Brassica carinata
BcaC03g13757 Brassica carinata
BcaC03g13758 Brassica carinata
BcaC04g19427 Brassica carinata
BcaC04g23073 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p01640 Brassica napus
BolC2t07037H Brassica oleracea
BolC3t13629H Brassica oleracea
BolC9t54135H Brassica oleracea
BolC9t58450H Brassica oleracea
BraA02t05569Z Brassica rapa
BraA03t10312Z Brassica rapa
BraA09t36691Z Brassica rapa
BraA10t44035Z Brassica rapa
C03p11570 Brassica napus
C09p12420 Brassica napus
C09p55820 Brassica napus
CAN.G1281.3 Capsicum annuum
CAN.G504.62 Capsicum annuum
CANSAT11G1418 Cannabis sativa
CANSAT54G1914 Cannabis sativa
CARHR105290 Cardamine hirsuta
CARHR192490 Cardamine hirsuta
Carub.0003s2842 Capsella rubella
Carub.0006s1874 Capsella rubella
Ca_18421_v3 Cicer arietinum L.
Ca_18436_v3 Cicer arietinum L.
Ca_21638_v3 Cicer arietinum L.
CBR_g22348 Chara braunii
Cc02_g20440 Coffea canephora
Cc06_g07670 Coffea canephora
CDE04G0160 Ceratophyllum demersum
CDE05G1547 Ceratophyllum demersum
CDE05G3103 Ceratophyllum demersum
Cfa002264 Carpinus fangiana
Cfa004789 Carpinus fangiana
Ciclev10007734m.g Citrus clementina
Ciclev10028145m.g Citrus clementina
CiPaw.03G252400 Carya illinoinensis
CiPaw.05G025300 Carya illinoinensis
CiPaw.06G161500 Carya illinoinensis
ClCG02G007560 Citrullus lanatus
ClCG11G003500 Citrullus lanatus
COL.COLO4_03740 Corchorus olitorius
COL.COLO4_17844 Corchorus olitorius
COL.COLO4_33368 Corchorus olitorius
Cpa.g.sc20.59 Carica papaya
Cpa.g.sc20.60 Carica papaya
Cpa.g.sc46.65 Carica papaya
Cre07.g327700 Chlamydomonas reinhardtii
Cre10.g446700 Chlamydomonas reinhardtii
Cre16.g693800 Chlamydomonas reinhardtii
CsaV3_2G003370 Cucumis sativus L.
CsaV3_7G007240 Cucumis sativus L.
CSS0013388 Camellia sinensis var. sinensis
CSS0018570 Camellia sinensis var. sinensis
CSS0021913 Camellia sinensis var. sinensis
CSS0030259 Camellia sinensis var. sinensis
CSS0033823 Camellia sinensis var. sinensis
CSS0041508 Camellia sinensis var. sinensis
DCAR_009343 Daucus carota
DCAR_014917 Daucus carota
DCAR_029858 Daucus carota
Dinv09496 Davidia involucrata
Dinv36450 Davidia involucrata
Dinv41446 Davidia involucrata
Duzib052G0788 Durio zibethinus
Duzib150G0754 Durio zibethinus
Duzib187G1734 Durio zibethinus
ECA236G0452 Erigeron canadensis
ECA236G2038 Erigeron canadensis
ECA240G2533 Erigeron canadensis
EL10Ac8g18787 Beta vulgaris
EL10Ac9g22140 Beta vulgaris
Eucgr.C00485 Eucalyptus grandis
Eucgr.C04398 Eucalyptus grandis
Eucgr.I02519 Eucalyptus grandis
Eucgr.I02521 Eucalyptus grandis
Eucgr.L03621 Eucalyptus grandis
FAN15G0203 Fragaria x ananassa
FAN19G1251 Fragaria x ananassa
FAN20G1881 Fragaria x ananassa
FAN23G0648 Fragaria x ananassa
FAN24G1859 Fragaria x ananassa
FAN26G0516 Fragaria x ananassa
FAN27G2620 Fragaria x ananassa
FvH4_1g02030 Fragaria vesca
FvH4_2g10900 Fragaria vesca
Glyma.07G185000 Glycine max
Glyma.08G064300 Glycine max
Glyma.13G163400 Glycine max
Glyma.17G107500 Glycine max
Gohir.A01G179000 Gossypium hirsutum
Gohir.A05G013000 Gossypium hirsutum
Gohir.A06G052000 Gossypium hirsutum
Gohir.A08G090200 Gossypium hirsutum
Gohir.A13G201800 Gossypium hirsutum
Gohir.D01G169800 Gossypium hirsutum
Gohir.D05G014100 Gossypium hirsutum
Gohir.D06G050900 Gossypium hirsutum
Gohir.D08G101200 Gossypium hirsutum
Gohir.D13G207600 Gossypium hirsutum
Gorai.002G211400 Gossypium raimondii
Gorai.004G109200 Gossypium raimondii
Gorai.009G014100 Gossypium raimondii
Gorai.010G059000 Gossypium raimondii
Gorai.013G236500 Gossypium raimondii
GSVIVG01012856001 Vitis vinifera
GSVIVG01036957001 Vitis vinifera
HanXRQChr05g0143461 Helianthus annuus
HanXRQChr09g0241841 Helianthus annuus
HanXRQChr10g0319961 Helianthus annuus
HanXRQChr13g0393031 Helianthus annuus
Haze_10383 Corylus avellana
Haze_10385 Corylus avellana
Haze_25446 Corylus avellana
Hma1.2p1_2001F.1_g310670 Hydrangea macrophylla
HPP92_003861 Vanilla planifolia
HPP92_023611 Vanilla planifolia
HPP92_023701 Vanilla planifolia
HPP92_023801 Vanilla planifolia
HPP92_023802 Vanilla planifolia
Hund06486 Selenicereus undatus
Hund09309 Selenicereus undatus
Hund09310 Selenicereus undatus
Hund21596 Selenicereus undatus
Hund30950 Selenicereus undatus
Lalb_Chr07g0179371 Lupinus albus
Lalb_Chr09g0327031 Lupinus albus
Lalb_Chr12g0198391 Lupinus albus
Lalb_Chr13g0301341 Lupinus albus
Lj4g0015598 Lotus japonicus
Lj4g0021525 Lotus japonicus
Lj5C224G9 Lonicera japonica
Lj7C438G9 Lonicera japonica
Lj9A704T70 Lonicera japonica
Lj9C704G6 Lonicera japonica
Lsat_1_v5_gn_7_101440 Lactuca sativa
Lsat_1_v5_gn_7_43100 Lactuca sativa
Lsat_1_v5_gn_7_45841 Lactuca sativa
Lsat_1_v5_gn_7_83320 Lactuca sativa
Lsat_1_v5_gn_8_122281 Lactuca sativa
Lsat_1_v5_gn_8_62900 Lactuca sativa
Lsat_1_v5_gn_9_120441 Lactuca sativa
Manes.06G044200 Manihot esculenta
Manes.07G048400 Manihot esculenta
Manes.14G119200 Manihot esculenta
Mapoly0011s0006 Marchantia polymorpha
MBI14_g24980_MAGBIO Magnolia biondii
MBI15_g22778_MAGBIO Magnolia biondii
MBI16_g35804_MAGBIO Magnolia biondii
MBI19_g10185_MAGBIO Magnolia biondii
MCO01G343 Micromonas commoda
MCO15G356 Micromonas commoda
MD02G1018500 Malus domestica
MD05G1051300 Malus domestica
MD10G1058600 Malus domestica
MD15G1162500 Malus domestica
Medtr1g112830 Medicago truncatula
Medtr4g092760 Medicago truncatula
Medtr4g116160 Medicago truncatula
MELO3C004483.2 Cucumis melo
MELO3C018574.2 Cucumis melo
Migut.B00507 Erythranthe guttata
Migut.J01243 Erythranthe guttata
MSTRG.16651 Avicennia marina
MSTRG.26328 Avicennia marina
MSTRG.6075 Avicennia marina
Nitab4.5_0001477g0220 Nicotiana tabacum
Nitab4.5_0002286g0080 Nicotiana tabacum
Nitab4.5_0009284g0010 Nicotiana tabacum
Nitab4.5_0012619g0010 Nicotiana tabacum
Nn1g05111 Nelumbo nucifera
Nn1g05953 Nelumbo nucifera
Nn2g12187 Nelumbo nucifera
Nn8g39645 Nelumbo nucifera
Oeu008555.1 Olea europaea
Oeu025243.1 Olea europaea
Oeu028019.1 Olea europaea
Oeu028131.2 Olea europaea
Oeu041151.1 Olea europaea
Oeu047141.1 Olea europaea
Oeu055934.1 Olea europaea
Oeu058581.1 Olea europaea
Oeu058582.1 Olea europaea
Os02g0184000 Oryza sativa ssp. japonica
Os06g0644500 Oryza sativa ssp. japonica
Os11g0549700 Oryza sativa ssp. japonica
Peaxi162Scf00088g00616 Petunia axillaris
Peaxi162Scf00299g00344 Petunia axillaris
PGR102G0275 Punica granatum
PGR142G2732 Punica granatum
PGSC0003DMG400003113 Solanum tuberosum
PGSC0003DMG400030687 Solanum tuberosum
Phvul.002G216500 Phaseolus vulgaris
Phvul.003G172300 Phaseolus vulgaris
Potri.001G287000 Populus trichocarpa
Potri.006G061800 Populus trichocarpa
Potri.018G121200 Populus trichocarpa
Pp3c12_14430 Physcomitrium patens
Pp3c4_7570 Physcomitrium patens
PRCOL_00003543 Prasinoderma coloniale
Prupe.7G252300 Prunus persica
Prupe.8G078000 Prunus persica
Psat0s571g0040 Pisum sativum
Psat7g103640 Pisum sativum
PSO017G2992 Papaver somniferum
PSO170G2750 Papaver somniferum
PSO384G1487 Papaver somniferum
PSO761G0012 Papaver somniferum
QL02p090736 Quercus lobata
QL11p027300 Quercus lobata
RcHm_v2.0_Chr2g0087091 Rosa chinensis
RcHm_v2.0_Chr5g0056731 Rosa chinensis
RcHm_v2.0_Chr5g0056741 Rosa chinensis
RcHm_v2.0_Chr6g0269021 Rosa chinensis
Rhsim03G0253000 Rhododendron simsii
Rhsim03G0253100 Rhododendron simsii
Rhsim11G0145200 Rhododendron simsii
Sabra06G0044500 Salix brachista
Sabra16G0179500 Salix brachista
Sabra16G0306200 Salix brachista
Sabra18G0099900 Salix brachista
Sabra18G0101700 Salix brachista
SalBow1G0631 Salvia bowleyana
SalBow6G4178 Salvia bowleyana
Sc08g0006050 Simmondsia chinensis
Sc14g0003280 Simmondsia chinensis
Sc14g0003290 Simmondsia chinensis
Sed0011227 Sechium edule
Sed0011868 Sechium edule
Sed0015168 Sechium edule
Sed0015884 Sechium edule
SEGI_14223 Sequoiadendron giganteum
SEGI_20388 Sequoiadendron giganteum
SEGI_22278 Sequoiadendron giganteum
SGA_v2.0_scaffold132G34499 Striga asiatica
SGA_v2.0_scaffold32G12961 Striga asiatica
SHI03251 Sapria himalayana
SHI03252 Sapria himalayana
SHI03254 Sapria himalayana
SHI04910 Sapria himalayana
SMO367G0445 Selaginella moellendorffii
Solyc01g106440.3 Solanum lycopersicum
Solyc07g007430.3 Solanum lycopersicum
Sopen01g048810 Solanum pennellii
Sopen07g003480 Solanum pennellii
Sp3g27650 Schrenkiella parvula
Sp6g24080 Schrenkiella parvula
TAR170G0002 Trochodendron aralioides
TAR383G0696 Trochodendron aralioides
TAR625G0169 Trochodendron aralioides
TAR628G0134 Trochodendron aralioides
TAR677G0001 Trochodendron aralioides
THA.LOC104799627 Tarenaya hassleriana
THA.LOC104804427 Tarenaya hassleriana
THA.LOC104811016 Tarenaya hassleriana
THA.LOC104819513 Tarenaya hassleriana
Thecc.02G035600 Theobroma cacao
Thecc.02G036000 Theobroma cacao
Thecc.02G036100 Theobroma cacao
Thecc.02G036400 Theobroma cacao
Thecc.09G137300 Theobroma cacao
Thhalv10012979m.g Eutrema salsugineum
Thhalv10022988m.g Eutrema salsugineum
TPR.G16882 Trifolium pratense
TPR.G7984 Trifolium pratense
TWI23G0439 Tripterygium wilfordii
TWI34G1350 Tripterygium wilfordii
TWI59G0597 Tripterygium wilfordii
unitig_61.g26043 Utricularia gibba
vmacro01910 Vaccinium macrocarpon
vmacro05714 Vaccinium macrocarpon
vmacro06117 Vaccinium macrocarpon
vmacro06119 Vaccinium macrocarpon
vmacro07495 Vaccinium macrocarpon
vmacro11340 Vaccinium macrocarpon
vmacro22982 Vaccinium macrocarpon
vmacro23528 Vaccinium macrocarpon
VMungo0251G1481 Vigna mungo
VMungo0331G0152 Vigna mungo
VMungo1215G1266 Vigna mungo
Zm00001eb113880 Zea mays
Zm00001eb234320 Zea mays
Zm00001eb234330 Zea mays
Zm00001eb275220 Zea mays
Zm00001eb386990 Zea mays

User provided reference genes

Program Settings