Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p22290 Brassica napus
A04p04360 Brassica napus
A04p30250 Brassica napus
A05p06600 Brassica napus
A09p48600 Brassica napus
Aa31LG10G10620 Aethionema arabicum
Aa31LG5G19820 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3734 Anthoceros agrestis
Actinidia05329 Actinidia chinensis
Actinidia13892 Actinidia chinensis
Ah.10g037120 Amaranthus hybridus
Ah.16g102690 Amaranthus hybridus
AL4G37340 Arabidopsis lyrata
AL5G36820 Arabidopsis lyrata
Aqoxy1G00830 Aquilegia oxysepala
Aqoxy2G02350 Aquilegia oxysepala
Aqoxy4G01210 Aquilegia oxysepala
Aqoxy7G01020 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.02CEIS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1W477Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AXAR8E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NA5QFN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NB6840 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SCHW0S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V8868B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WS4P7I Arachis hypogaea
AT2G39800 Arabidopsis thaliana
AT3G55610 Arabidopsis thaliana
ATR0559G072 Amborella trichopoda
Atru.chr12.310 Acer truncatum
Atru.chr12.339 Acer truncatum
Atru.chr2.341 Acer truncatum
Atru.chr8.2063 Acer truncatum
AUR62012146 Chenopodium quinoa
AUR62040689 Chenopodium quinoa
BcaB01g00075 Brassica carinata
BcaB02g08406 Brassica carinata
BcaB02g09087 Brassica carinata
BcaC01g05465 Brassica carinata
BcaC02g09773 Brassica carinata
BcaC02g12113 Brassica carinata
BcaC07g39890 Brassica carinata
BolC3t15024H Brassica oleracea
BolC4t22387H Brassica oleracea
BolC4t25122H Brassica oleracea
BolC4t28260H Brassica oleracea
BolC8t50718H Brassica oleracea
BraA03t11461Z Brassica rapa
BraA04t16146Z Brassica rapa
BraA04t18483Z Brassica rapa
BraA05t19627Z Brassica rapa
BraA09t40312Z Brassica rapa
C03p26390 Brassica napus
C04p07710 Brassica napus
C04p36750 Brassica napus
C04p67610 Brassica napus
C08p30930 Brassica napus
CAN.G55.4 Capsicum annuum
CAN.G56.12 Capsicum annuum
CANSAT35G2026 Cannabis sativa
CANSAT56G3123 Cannabis sativa
CARHR110300 Cardamine hirsuta
CARHR134680 Cardamine hirsuta
CARHR165670 Cardamine hirsuta
Carub.0004s2190 Capsella rubella
Carub.0005s2236 Capsella rubella
Carub.0008s0581 Capsella rubella
Ca_04340_v3 Cicer arietinum L.
Ca_05442_v3 Cicer arietinum L.
Ca_05443_v3 Cicer arietinum L.
Ca_08197_v3 Cicer arietinum L.
Ca_11230_v3 Cicer arietinum L.
Ca_19864_v3 Cicer arietinum L.
Ca_20077_v3 Cicer arietinum L.
Ca_20718_v3 Cicer arietinum L.
Ca_25275_v3 Cicer arietinum L.
Ca_27801_v3 Cicer arietinum L.
Ca_30802_v3 Cicer arietinum L.
CBR_g41475 Chara braunii
CBR_g41476 Chara braunii
Cc02_g07340 Coffea canephora
Cc06_g02210 Coffea canephora
CDE03G0314 Ceratophyllum demersum
CDE04G2263 Ceratophyllum demersum
Cfa001416 Carpinus fangiana
Cfa017318 Carpinus fangiana
Cfa025156 Carpinus fangiana
Ciclev10011176m.g Citrus clementina
Ciclev10030839m.g Citrus clementina
CiPaw.02G187200 Carya illinoinensis
CiPaw.09G199300 Carya illinoinensis
CiPaw.10G148400 Carya illinoinensis
ClCG10G021450 Citrullus lanatus
ClCG11G006600 Citrullus lanatus
COL.COLO4_14726 Corchorus olitorius
COL.COLO4_25521 Corchorus olitorius
Cpa.g.sc454.3 Carica papaya
Cre03.g146527 Chlamydomonas reinhardtii
Cre17.g705700 Chlamydomonas reinhardtii
Cre17.g705850 Chlamydomonas reinhardtii
CsaV3_3G034580 Cucumis sativus L.
CsaV3_6G001400 Cucumis sativus L.
CSS0012426 Camellia sinensis var. sinensis
CSS0013546 Camellia sinensis var. sinensis
CSS0033508 Camellia sinensis var. sinensis
CSS0036237 Camellia sinensis var. sinensis
CSS0049625 Camellia sinensis var. sinensis
DCAR_011746 Daucus carota
DCAR_015464 Daucus carota
DCAR_027589 Daucus carota
DCAR_028770 Daucus carota
Dinv16262 Davidia involucrata
Dinv34468 Davidia involucrata
Dinv35556 Davidia involucrata
Duzib093G1092 Durio zibethinus
Duzib106G1125 Durio zibethinus
Duzib114G0145 Durio zibethinus
ECA233G2143 Erigeron canadensis
ECA236G0076 Erigeron canadensis
ECA238G1315 Erigeron canadensis
ECA240G3928 Erigeron canadensis
EL10Ac2g03194 Beta vulgaris
EL10Ac2g03195 Beta vulgaris
EL10Ac2g03396 Beta vulgaris
EL10Ac2g04689 Beta vulgaris
EL10Ac6g13844 Beta vulgaris
EL10Ac7g16504 Beta vulgaris
EL10Ac7g17447 Beta vulgaris
EL10Ac8g19928 Beta vulgaris
Eucgr.G02990 Eucalyptus grandis
FAN01G1385 Fragaria x ananassa
FAN01G1908 Fragaria x ananassa
FAN03G1739 Fragaria x ananassa
FAN03G3080 Fragaria x ananassa
FAN04G0085 Fragaria x ananassa
FAN05G4120 Fragaria x ananassa
FAN06G0113 Fragaria x ananassa
FAN06G0432 Fragaria x ananassa
FAN06G1106 Fragaria x ananassa
FAN06G2741 Fragaria x ananassa
FAN06G4968 Fragaria x ananassa
FAN09G1801 Fragaria x ananassa
FAN10G0699 Fragaria x ananassa
FAN10G2061 Fragaria x ananassa
FAN14G3631 Fragaria x ananassa
FvH4_6g12980 Fragaria vesca
FvH4_6g23770 Fragaria vesca
FvH4_7g21760 Fragaria vesca
FvH4_7g23420 Fragaria vesca
FvH4_7g23430 Fragaria vesca
Glyma.01G099800 Glycine max
Glyma.02G251100 Glycine max
Glyma.03G069400 Glycine max
Glyma.07G137300 Glycine max
Glyma.14G065600 Glycine max
Glyma.14G110800 Glycine max
Glyma.18G034300 Glycine max
Glyma.18G188000 Glycine max
Gohir.A01G221500 Gossypium hirsutum
Gohir.A04G091000 Gossypium hirsutum
Gohir.A04G091100 Gossypium hirsutum
Gohir.A10G223400 Gossypium hirsutum
Gohir.A11G327900 Gossypium hirsutum
Gohir.D01G210500 Gossypium hirsutum
Gohir.D04G124500 Gossypium hirsutum
Gohir.D10G235800 Gossypium hirsutum
Gohir.D11G346800 Gossypium hirsutum
Gorai.002G256200 Gossypium raimondii
Gorai.007G377200 Gossypium raimondii
Gorai.011G269700 Gossypium raimondii
Gorai.012G107700 Gossypium raimondii
GSVIVG01016467001 Vitis vinifera
GSVIVG01034097001 Vitis vinifera
HanXRQChr06g0177501 Helianthus annuus
HanXRQChr07g0201741 Helianthus annuus
HanXRQChr08g0221191 Helianthus annuus
HanXRQChr12g0369501 Helianthus annuus
Haze_17128 Corylus avellana
Haze_20853 Corylus avellana
Haze_20856 Corylus avellana
Haze_26406 Corylus avellana
Hma1.2p1_0039F.1_g024670 Hydrangea macrophylla
Hma1.2p1_0766F.1_g215140 Hydrangea macrophylla
HPP92_003401 Vanilla planifolia
HPP92_003417 Vanilla planifolia
HPP92_003420 Vanilla planifolia
HPP92_003421 Vanilla planifolia
HPP92_003422 Vanilla planifolia
Hund13799 Selenicereus undatus
Hund16052 Selenicereus undatus
Hund31085 Selenicereus undatus
Hund31086 Selenicereus undatus
Lalb_Chr01g0022711 Lupinus albus
Lalb_Chr03g0042551 Lupinus albus
Lalb_Chr03g0042561 Lupinus albus
Lalb_Chr07g0193841 Lupinus albus
Lalb_Chr18g0053021 Lupinus albus
Lalb_Chr20g0116801 Lupinus albus
Lj1g0025704 Lotus japonicus
Lj2C88T11 Lonicera japonica
Lj3g0010966 Lotus japonicus
Lj6g0024002 Lotus japonicus
Lj8A78T46 Lonicera japonica
Lj8C78T4 Lonicera japonica
LjContig00141g0015744 Lotus japonicus
LjContig00141g0024717 Lotus japonicus
Lsat_1_v5_gn_2_117820 Lactuca sativa
Lsat_1_v5_gn_3_58100 Lactuca sativa
Lsat_1_v5_gn_4_87120 Lactuca sativa
Lsat_1_v5_gn_8_14760 Lactuca sativa
Lsat_1_v5_gn_8_14780 Lactuca sativa
Lsat_1_v5_gn_8_84340 Lactuca sativa
Lsat_1_v5_gn_9_63480 Lactuca sativa
Manes.07G120700 Manihot esculenta
Manes.10G024800 Manihot esculenta
Mapoly0102s0016 Marchantia polymorpha
MBI05_g02644_MAGBIO Magnolia biondii
MBI14_g09012_MAGBIO Magnolia biondii
MBI14_g09013_MAGBIO Magnolia biondii
MBI15_g44047_MAGBIO Magnolia biondii
MBI18_g37838_MAGBIO Magnolia biondii
MCO10G085 Micromonas commoda
MCO12G375 Micromonas commoda
MCO15G296 Micromonas commoda
MD00G1141100 Malus domestica
MD01G1140200 Malus domestica
MD04G1136200 Malus domestica
MD07G1204500 Malus domestica
MD12G1150700 Malus domestica
Medtr3g069080 Medicago truncatula
Medtr4g020110 Medicago truncatula
Medtr4g095062 Medicago truncatula
Medtr7g063650 Medicago truncatula
MELO3C008245.2 Cucumis melo
MELO3C009229.2 Cucumis melo
MELO3C029889.2 Cucumis melo
Migut.F00741 Erythranthe guttata
Migut.F01286 Erythranthe guttata
Migut.L01967 Erythranthe guttata
MSTRG.262 Avicennia marina
MSTRG.8285 Avicennia marina
Nitab4.5_0000820g0050 Nicotiana tabacum
Nitab4.5_0000987g0050 Nicotiana tabacum
Nitab4.5_0005552g0010 Nicotiana tabacum
Nitab4.5_0005907g0010 Nicotiana tabacum
Nitab4.5_0005907g0020 Nicotiana tabacum
Nn6g32118 Nelumbo nucifera
Oeu001518.3 Olea europaea
Oeu031367.1 Olea europaea
Oeu059733.3 Olea europaea
Os01g0848200 Oryza sativa ssp. japonica
Os05g0455500 Oryza sativa ssp. japonica
Peaxi162Scf00071g00712 Petunia axillaris
Peaxi162Scf00658g00314 Petunia axillaris
PGR044G1839 Punica granatum
PGR142G4170 Punica granatum
PGSC0003DMG401026767 Solanum tuberosum
PGSC0003DMG402026767 Solanum tuberosum
Phvul.001G236900 Phaseolus vulgaris
Phvul.008G115100 Phaseolus vulgaris
Phvul.008G230300 Phaseolus vulgaris
Phvul.010G015400 Phaseolus vulgaris
Potri.008G060200 Populus trichocarpa
Potri.010G198400 Populus trichocarpa
Pp3c2_30250 Physcomitrium patens
PRCOL_00004107 Prasinoderma coloniale
Prupe.2G240800 Prunus persica
Prupe.6G262300 Prunus persica
Psat3g135680 Pisum sativum
Psat5g040600 Pisum sativum
Psat5g224240 Pisum sativum
Psat7g019920 Pisum sativum
Psat7g240160 Pisum sativum
Psat7g249360 Pisum sativum
PSO339G0512 Papaver somniferum
PSO339G1884 Papaver somniferum
PSO339G2352 Papaver somniferum
PSO384G3390 Papaver somniferum
PSO513G0038 Papaver somniferum
QL07p028781 Quercus lobata
QL08p061656 Quercus lobata
QL08p061661 Quercus lobata
RcHm_v2.0_Chr1g0352531 Rosa chinensis
RcHm_v2.0_Chr1g0368541 Rosa chinensis
RcHm_v2.0_Chr1g0368551 Rosa chinensis
RcHm_v2.0_Chr1g0368561 Rosa chinensis
RcHm_v2.0_Chr1g0368571 Rosa chinensis
RcHm_v2.0_Chr1g0368581 Rosa chinensis
RcHm_v2.0_Chr3g0465091 Rosa chinensis
Rhsim04G0137300 Rhododendron simsii
Rhsim04G0162000 Rhododendron simsii
Rhsim09G0168800 Rhododendron simsii
Sabra10G0152700 Salix brachista
Sc10g0001870 Simmondsia chinensis
Sed0000752 Sechium edule
Sed0016728 Sechium edule
Sed0019707 Sechium edule
SEGI_10665 Sequoiadendron giganteum
SEGI_11583 Sequoiadendron giganteum
SGA_v2.0_scaffold2G00986 Striga asiatica
SGA_v2.0_scaffold94G28569 Striga asiatica
SHI03694 Sapria himalayana
SMO116G0247 Selaginella moellendorffii
SMO116G0394 Selaginella moellendorffii
Solyc06g019170.3 Solanum lycopersicum
Solyc08g043170.4 Solanum lycopersicum
Sopen05g017760 Solanum pennellii
Sopen06g009130 Solanum pennellii
Sopen08g012950 Solanum pennellii
Sopen12g013210 Solanum pennellii
Sp4g22080 Schrenkiella parvula
Sp5g06860 Schrenkiella parvula
TAR369G1092 Trochodendron aralioides
TAR633G1843 Trochodendron aralioides
TAR636G0877 Trochodendron aralioides
TAR636G3200 Trochodendron aralioides
THA.LOC104810068 Tarenaya hassleriana
THA.LOC104824302 Tarenaya hassleriana
Thecc.05G032200 Theobroma cacao
Thecc.10G034600 Theobroma cacao
Thhalv10010150m.g Eutrema salsugineum
Thhalv10016322m.g Eutrema salsugineum
TPR.G10324 Trifolium pratense
TPR.G17887 Trifolium pratense
TPR.G27326 Trifolium pratense
TWI23G0119 Tripterygium wilfordii
TWI59G0560 Tripterygium wilfordii
TWI74G1624 Tripterygium wilfordii
unitig_22.g6673 Utricularia gibba
unitig_8.g3309 Utricularia gibba
vmacro08635 Vaccinium macrocarpon
vmacro10212 Vaccinium macrocarpon
VMungo0331G0623 Vigna mungo
VMungo0647G1828 Vigna mungo
VMungo1383G1967 Vigna mungo
VMungo1383G2509 Vigna mungo
Zm00001eb289500 Zea mays
Zm00001eb347680 Zea mays
Zm00001eb367740 Zea mays

User provided reference genes

Program Settings