Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p41500 Brassica napus
A03p03500 Brassica napus
A03p46840 Brassica napus
A08p28060 Brassica napus
A09p51450 Brassica napus
A09p62630 Brassica napus
A09p67390 Brassica napus
A10p28680 Brassica napus
Aa31LG11G2150 Aethionema arabicum
Aa31LG1G1210 Aethionema arabicum
Aa31LG3G18610 Aethionema arabicum
Actinidia04844 Actinidia chinensis
Actinidia09248 Actinidia chinensis
Actinidia19009 Actinidia chinensis
Actinidia28635 Actinidia chinensis
Actinidia32292 Actinidia chinensis
Actinidia35024 Actinidia chinensis
Ah.01g016240 Amaranthus hybridus
Ah.01g016260 Amaranthus hybridus
Ah.01g016350 Amaranthus hybridus
Ah.01g016410 Amaranthus hybridus
Ah.01g016430 Amaranthus hybridus
Ah.01g016590 Amaranthus hybridus
AL1G25720 Arabidopsis lyrata
AL6G18210 Arabidopsis lyrata
AL8G37870 Arabidopsis lyrata
Aqoxy3G00405 Aquilegia oxysepala
Aqoxy3G03579 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0Q4XQV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FI6TLI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HRQ2U6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N4QJK1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R93B4J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZQ0E46 Arachis hypogaea
AT1G13890 Arabidopsis thaliana
AT5G07880 Arabidopsis thaliana
AT5G61210 Arabidopsis thaliana
ATR0064G056 Amborella trichopoda
Atru.chr11.1672 Acer truncatum
Atru.chr11.1676 Acer truncatum
Atru.chr9.372 Acer truncatum
AUR62003121 Chenopodium quinoa
AUR62007940 Chenopodium quinoa
AUR62007941 Chenopodium quinoa
AUR62008496 Chenopodium quinoa
AUR62021598 Chenopodium quinoa
BcaB01g05646 Brassica carinata
BcaB08g34344 Brassica carinata
BcaC03g14614 Brassica carinata
BcaC03g15261 Brassica carinata
BcaC06g32511 Brassica carinata
BcaC06g33173 Brassica carinata
BcaC06g33216 Brassica carinata
BcaC06g35386 Brassica carinata
BcaC07g39777 Brassica carinata
BcaC07g40622 Brassica carinata
BcaC07g41615 Brassica carinata
BcaC07g42659 Brassica carinata
BcaC08g43433 Brassica carinata
BcaNung06904 Brassica carinata
BolC2t08896H Brassica oleracea
BolC2t12195H Brassica oleracea
BolC3t12930H Brassica oleracea
BolC7t45012H Brassica oleracea
BolC8t50610H Brassica oleracea
BolC8t50665H Brassica oleracea
BolC8t52168H Brassica oleracea
BolC9t59644H Brassica oleracea
BraA02t08186Z Brassica rapa
BraA02t09091Z Brassica rapa
BraA03t09700Z Brassica rapa
BraA03t13804Z Brassica rapa
BraA08t34737Z Brassica rapa
BraA09t41627Z Brassica rapa
BraA10t44915Z Brassica rapa
C02p28540 Brassica napus
C02p61430 Brassica napus
C03p03940 Brassica napus
C07p16720 Brassica napus
C07p44890 Brassica napus
C07p52020 Brassica napus
C08p30010 Brassica napus
C08p46190 Brassica napus
C09p68990 Brassica napus
CAN.G1340.2 Capsicum annuum
CAN.G479.30 Capsicum annuum
CAN.G587.27 Capsicum annuum
CANSAT64G0128 Cannabis sativa
CANSAT80G0965 Cannabis sativa
CARHR014260 Cardamine hirsuta
CARHR205320 Cardamine hirsuta
CARHR274960 Cardamine hirsuta
Carub.0001s1359 Capsella rubella
Carub.0006s0677 Capsella rubella
Carub.0008s2187 Capsella rubella
Ca_04939_v3 Cicer arietinum L.
Ca_13808_v3 Cicer arietinum L.
Ca_21791_v3 Cicer arietinum L.
CBR_g23064 Chara braunii
Cc00_g02300 Coffea canephora
Cc11_g12230 Coffea canephora
CDE02G2146 Ceratophyllum demersum
CDE04G1838 Ceratophyllum demersum
CDE04G2157 Ceratophyllum demersum
CDE06G0140 Ceratophyllum demersum
CDE07G0246 Ceratophyllum demersum
Cfa008897 Carpinus fangiana
Cfa019298 Carpinus fangiana
Ciclev10021320m.g Citrus clementina
Ciclev10033712m.g Citrus clementina
CiPaw.05G127000 Carya illinoinensis
CiPaw.06G033400 Carya illinoinensis
CiPaw.11G049900 Carya illinoinensis
CiPaw.12G007500 Carya illinoinensis
ClCG04G011950 Citrullus lanatus
ClCG05G023810 Citrullus lanatus
ClCG06G015830 Citrullus lanatus
COL.COLO4_22752 Corchorus olitorius
COL.COLO4_27917 Corchorus olitorius
Cpa.g.sc1.103 Carica papaya
Cpa.g.sc94.8 Carica papaya
CsaV3_1G002730 Cucumis sativus L.
CsaV3_1G005820 Cucumis sativus L.
CsaV3_5G033200 Cucumis sativus L.
CSS0002754 Camellia sinensis var. sinensis
CSS0006468 Camellia sinensis var. sinensis
CSS0043475 Camellia sinensis var. sinensis
DCAR_016592 Daucus carota
DCAR_026016 Daucus carota
DCAR_030348 Daucus carota
Dinv10690 Davidia involucrata
Dinv34087 Davidia involucrata
Dinv38785 Davidia involucrata
Duzib068G1303 Durio zibethinus
Duzib084G0310 Durio zibethinus
Duzib205G1803 Durio zibethinus
Duzib248G0363 Durio zibethinus
Duzib268G0259 Durio zibethinus
ECA232G4101 Erigeron canadensis
ECA233G5201 Erigeron canadensis
ECA247G2567 Erigeron canadensis
EL10Ac5g11098 Beta vulgaris
Eucgr.B00569 Eucalyptus grandis
Eucgr.B03167 Eucalyptus grandis
Eucgr.B03169 Eucalyptus grandis
Eucgr.K02499 Eucalyptus grandis
FAN07G2034 Fragaria x ananassa
FAN08G3110 Fragaria x ananassa
FAN12G0413 Fragaria x ananassa
FAN13G2592 Fragaria x ananassa
FAN17G2031 Fragaria x ananassa
FAN18G1464 Fragaria x ananassa
FAN22G0505 Fragaria x ananassa
FvH4_4g30390 Fragaria vesca
FvH4_5g14310 Fragaria vesca
Glyma.01G056500 Glycine max
Glyma.02G115100 Glycine max
Glyma.04G164400 Glycine max
Glyma.05G023100 Glycine max
Glyma.06G200100 Glycine max
Glyma.17G076600 Glycine max
Gohir.A07G069500 Gossypium hirsutum
Gohir.A12G180700 Gossypium hirsutum
Gohir.A13G080500 Gossypium hirsutum
Gohir.D07G073900 Gossypium hirsutum
Gohir.D12G183175 Gossypium hirsutum
Gohir.D12G183400 Gossypium hirsutum
Gohir.D13G080300 Gossypium hirsutum
Gorai.001G078100 Gossypium raimondii
Gorai.008G196700 Gossypium raimondii
Gorai.013G092000 Gossypium raimondii
GSVIVG01007921001 Vitis vinifera
GSVIVG01012200001 Vitis vinifera
HanXRQChr02g0039291 Helianthus annuus
HanXRQChr04g0101441 Helianthus annuus
HanXRQChr08g0211531 Helianthus annuus
HanXRQChr09g0270161 Helianthus annuus
HanXRQChr10g0289051 Helianthus annuus
HanXRQChr12g0362921 Helianthus annuus
HanXRQChr16g0502271 Helianthus annuus
Haze_07679 Corylus avellana
Haze_07683 Corylus avellana
Haze_11927 Corylus avellana
Hma1.2p1_0060F.1_g033310 Hydrangea macrophylla
Hma1.2p1_0060F.1_g033320 Hydrangea macrophylla
Hma1.2p1_0354F.1_g133570 Hydrangea macrophylla
HPP92_000929 Vanilla planifolia
HPP92_012302 Vanilla planifolia
HPP92_019479 Vanilla planifolia
Hund02607 Selenicereus undatus
Hund05851 Selenicereus undatus
Hund09851 Selenicereus undatus
Lalb_Chr07g0178251 Lupinus albus
Lalb_Chr10g0098661 Lupinus albus
Lalb_Chr13g0302961 Lupinus albus
Lalb_Chr17g0341091 Lupinus albus
Lj1g0010260 Lotus japonicus
Lj2g0026552 Lotus japonicus
Lj4g0019276 Lotus japonicus
Lj5A105T61 Lonicera japonica
Lj6A782T109 Lonicera japonica
Lj9A469T63 Lonicera japonica
Lsat_1_v5_gn_1_13680 Lactuca sativa
Lsat_1_v5_gn_4_110181 Lactuca sativa
Lsat_1_v5_gn_8_47381 Lactuca sativa
Manes.05G108400 Manihot esculenta
Manes.06G087300 Manihot esculenta
Manes.14G083800 Manihot esculenta
Mapoly0199s0021 Marchantia polymorpha
MBI05_g03433_MAGBIO Magnolia biondii
MBI05_g34819_MAGBIO Magnolia biondii
MBI10_g08048_MAGBIO Magnolia biondii
MBI16_g30408_MAGBIO Magnolia biondii
MBI18_g15815_MAGBIO Magnolia biondii
MD06G1199700 Malus domestica
MD13G1064800 Malus domestica
MD14G1208700 Malus domestica
MD16G1063400 Malus domestica
Medtr3g023720 Medicago truncatula
Medtr4g109310 Medicago truncatula
Medtr5g043850 Medicago truncatula
Medtr8g021950 Medicago truncatula
MELO3C002014.2 Cucumis melo
MELO3C012141.2 Cucumis melo
MELO3C017208.2 Cucumis melo
Migut.D01675 Erythranthe guttata
Migut.I00314 Erythranthe guttata
Migut.L01208 Erythranthe guttata
MSTRG.22970 Avicennia marina
MSTRG.4466 Avicennia marina
MSTRG.740 Avicennia marina
Nitab4.5_0001688g0040 Nicotiana tabacum
Nitab4.5_0002362g0030 Nicotiana tabacum
Nitab4.5_0002881g0110 Nicotiana tabacum
Nitab4.5_0004304g0060 Nicotiana tabacum
Nitab4.5_0004511g0040 Nicotiana tabacum
Nitab4.5_0006673g0060 Nicotiana tabacum
Nn3g17395 Nelumbo nucifera
Nn4g23372 Nelumbo nucifera
Oeu003338.1 Olea europaea
Oeu014396.2 Olea europaea
Oeu016224.1 Olea europaea
Oeu016752.1 Olea europaea
Oeu042730.1 Olea europaea
Oeu057647.1 Olea europaea
Os02g0437200 Oryza sativa ssp. japonica
Os02g0529500 Oryza sativa ssp. japonica
Os03g0212400 Oryza sativa ssp. japonica
Peaxi162Scf00013g00531 Petunia axillaris
Peaxi162Scf00201g00023 Petunia axillaris
Peaxi162Scf00314g00118 Petunia axillaris
PGR044G0805 Punica granatum
PGR083G2448 Punica granatum
PGR083G2587 Punica granatum
PGR102G3074 Punica granatum
PGSC0003DMG400024552 Solanum tuberosum
PGSC0003DMG400028324 Solanum tuberosum
PGSC0003DMG400033088 Solanum tuberosum
Phvul.002G081500 Phaseolus vulgaris
Phvul.003G186500 Phaseolus vulgaris
Phvul.009G190830 Phaseolus vulgaris
Potri.008G093800 Populus trichocarpa
Potri.010G160350 Populus trichocarpa
Potri.012G066700 Populus trichocarpa
Potri.015G049000 Populus trichocarpa
Pp3c1_30760 Physcomitrium patens
Pp3c2_7850 Physcomitrium patens
Prupe.1G283300 Prunus persica
Prupe.5G201000 Prunus persica
Psat2g128720 Pisum sativum
Psat4g048480 Pisum sativum
Psat7g133360 Pisum sativum
PSO017G3259 Papaver somniferum
PSO478G4257 Papaver somniferum
QL03p071152 Quercus lobata
QL10p018664 Quercus lobata
RcHm_v2.0_Chr4g0438681 Rosa chinensis
RcHm_v2.0_Chr7g0182581 Rosa chinensis
Rhsim08G0148800 Rhododendron simsii
Rhsim12G0076300 Rhododendron simsii
Rhsim12G0152300 Rhododendron simsii
Sabra08G0070400 Salix brachista
Sabra10G0122000 Salix brachista
Sabra12G0048400 Salix brachista
Sabra15G0078300 Salix brachista
SalBow2G0205 Salvia bowleyana
SalBow2G1069 Salvia bowleyana
SalBow2G2328 Salvia bowleyana
SalBow2G3268 Salvia bowleyana
SalBow5G2102 Salvia bowleyana
SalBow7G2593 Salvia bowleyana
Sc04g0003060 Simmondsia chinensis
Sc11g0002340 Simmondsia chinensis
Sed0001339 Sechium edule
Sed0004985 Sechium edule
Sed0009688 Sechium edule
Sed0014698 Sechium edule
Sed0027270 Sechium edule
SEGI_27879 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31928 Striga asiatica
SGA_v2.0_scaffold16G07767 Striga asiatica
SHI27013 Sapria himalayana
SMO134G0025 Selaginella moellendorffii
SMO367G0537 Selaginella moellendorffii
Solyc03g115470.3 Solanum lycopersicum
Solyc05g012520.3 Solanum lycopersicum
Solyc06g069570.3 Solanum lycopersicum
Sopen03g034480 Solanum pennellii
Sopen05g007340 Solanum pennellii
Sopen06g026870 Solanum pennellii
Sp1g12070 Schrenkiella parvula
Sp2g24440 Schrenkiella parvula
Sp6g35070 Schrenkiella parvula
TAR371G0025 Trochodendron aralioides
TAR622G0034 Trochodendron aralioides
TAR629G3232 Trochodendron aralioides
THA.LOC104801817 Tarenaya hassleriana
THA.LOC104805187 Tarenaya hassleriana
THA.LOC104818335 Tarenaya hassleriana
Thecc.02G334700 Theobroma cacao
Thecc.03G097100 Theobroma cacao
Thhalv10004672m.g Eutrema salsugineum
Thhalv10008501m.g Eutrema salsugineum
Thhalv10014162m.g Eutrema salsugineum
TPR.G12171 Trifolium pratense
TPR.G2018 Trifolium pratense
TPR.G24422 Trifolium pratense
TWI15G0087 Tripterygium wilfordii
TWI31G0711 Tripterygium wilfordii
TWI60G1200 Tripterygium wilfordii
TWI79G0951 Tripterygium wilfordii
unitig_26.g9664 Utricularia gibba
unitig_749.g13211 Utricularia gibba
unitig_749.g13435 Utricularia gibba
vmacro01325 Vaccinium macrocarpon
vmacro16512 Vaccinium macrocarpon
vmacro17590 Vaccinium macrocarpon
VMungo0251G2438 Vigna mungo
VMungo1215G1139 Vigna mungo
VMungo1215G1594 Vigna mungo
VMungo1309G2000 Vigna mungo
Zm00001eb008520 Zea mays
Zm00001eb242620 Zea mays
Zm00001eb306020 Zea mays

User provided reference genes

Program Settings