Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p41470 Brassica napus
A03p32770 Brassica napus
A03p46790 Brassica napus
A05p44900 Brassica napus
A09p07240 Brassica napus
Aa31LG11G2190 Aethionema arabicum
Aa31LG3G18580 Aethionema arabicum
Aa31LG5G12620 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2405 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.2754 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2572 Anthoceros agrestis
Actinidia09251 Actinidia chinensis
Actinidia19005 Actinidia chinensis
Actinidia35029 Actinidia chinensis
Ah.04g164540 Amaranthus hybridus
Ah.09g232140 Amaranthus hybridus
Ah.12g062650 Amaranthus hybridus
AL3G11310 Arabidopsis lyrata
AL6G26370 Arabidopsis lyrata
AL8G37820 Arabidopsis lyrata
Aqoxy3G00487 Aquilegia oxysepala
Aqoxy3G03591 Aquilegia oxysepala
Aqoxy4G02205 Aquilegia oxysepala
Aqoxy6G02959 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.30MQLM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.74LVMP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7Y677Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HI5YN3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NBL2BC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P9IGRK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WY2I81 Arachis hypogaea
AT3G02080 Arabidopsis thaliana
AT5G15520 Arabidopsis thaliana
AT5G61170 Arabidopsis thaliana
ATR0064G089 Amborella trichopoda
ATR0796G181 Amborella trichopoda
Atru.chr8.415 Acer truncatum
Atru.chr9.410 Acer truncatum
AUR62008505 Chenopodium quinoa
AUR62018191 Chenopodium quinoa
AUR62021587 Chenopodium quinoa
AUR62038678 Chenopodium quinoa
BcaB03g16565 Brassica carinata
BcaB04g19903 Brassica carinata
BcaC01g04461 Brassica carinata
BcaC01g04490 Brassica carinata
BcaC04g23461 Brassica carinata
BcaC05g30322 Brassica carinata
BcaC05g30375 Brassica carinata
BcaC06g33176 Brassica carinata
BcaC06g33210 Brassica carinata
BcaC09g47683 Brassica carinata
BcaNung05360 Brassica carinata
BNapus_Darmor_BZH_scaffold_113p00130 Brassica napus
BNapus_Darmor_BZH_scaffold_97p00040 Brassica napus
BolC1t05922H Brassica oleracea
BolC2t12189H Brassica oleracea
BolC3t16250H Brassica oleracea
BolC5t35111H Brassica oleracea
BolC7t45007H Brassica oleracea
BolC9t53723H Brassica oleracea
BraA01t04632Z Brassica rapa
BraA02t09088Z Brassica rapa
BraA03t12446Z Brassica rapa
BraA03t13801Z Brassica rapa
BraA05t23167Z Brassica rapa
BraA09t36374Z Brassica rapa
C03p39870 Brassica napus
C07p44840 Brassica napus
C09p08090 Brassica napus
C09p75480 Brassica napus
CAN.G479.21 Capsicum annuum
CANSAT11G1207 Cannabis sativa
CANSAT56G1443 Cannabis sativa
CANSAT64G0568 Cannabis sativa
CARHR076040 Cardamine hirsuta
CARHR197790 Cardamine hirsuta
CARHR205260 Cardamine hirsuta
CARHR274900 Cardamine hirsuta
Carub.0003s0119 Capsella rubella
Carub.0006s1368 Capsella rubella
Carub.0008s2184 Capsella rubella
Ca_04327_v3 Cicer arietinum L.
Ca_18075_v3 Cicer arietinum L.
Ca_24014_v3 Cicer arietinum L.
CBR_g21828 Chara braunii
Cc04_g15000 Coffea canephora
Cc07_g03960 Coffea canephora
CDE02G2458 Ceratophyllum demersum
CDE04G3326 Ceratophyllum demersum
CDE07G0512 Ceratophyllum demersum
CDE09G0698 Ceratophyllum demersum
Cfa007645 Carpinus fangiana
Cfa007646 Carpinus fangiana
Cfa023802 Carpinus fangiana
Ciclev10013054m.g Citrus clementina
Ciclev10022728m.g Citrus clementina
CiPaw.03G090200 Carya illinoinensis
CiPaw.04G057200 Carya illinoinensis
ClCG09G006990 Citrullus lanatus
ClCG11G004690 Citrullus lanatus
COL.COLO4_22210 Corchorus olitorius
COL.COLO4_24621 Corchorus olitorius
COL.COLO4_36435 Corchorus olitorius
COL.COLO4_38303 Corchorus olitorius
Cpa.g.sc14.164 Carica papaya
Cpa.g.sc624.1 Carica papaya
Cre02.g106600 Chlamydomonas reinhardtii
CsaV3_3G017840 Cucumis sativus L.
CsaV3_5G038460 Cucumis sativus L.
CsaV3_7G028170 Cucumis sativus L.
CSS0003152 Camellia sinensis var. sinensis
CSS0014508 Camellia sinensis var. sinensis
CSS0026929 Camellia sinensis var. sinensis
CSS0033046 Camellia sinensis var. sinensis
CSS0035097 Camellia sinensis var. sinensis
CSS0038666 Camellia sinensis var. sinensis
CSS0042233 Camellia sinensis var. sinensis
CSS0044041 Camellia sinensis var. sinensis
CSS0047165 Camellia sinensis var. sinensis
CSS0049459 Camellia sinensis var. sinensis
CSS0050229 Camellia sinensis var. sinensis
DCAR_005349 Daucus carota
DCAR_021510 Daucus carota
DCAR_026009 Daucus carota
Dinv10530 Davidia involucrata
Dinv10693 Davidia involucrata
Dinv34955 Davidia involucrata
Duzib068G1033 Durio zibethinus
Duzib084G0811 Durio zibethinus
Duzib205G1474 Durio zibethinus
Duzib213G0642 Durio zibethinus
Duzib268G1166 Durio zibethinus
ECA232G2206 Erigeron canadensis
ECA232G4308 Erigeron canadensis
EL10Ac1g00385 Beta vulgaris
EL10Ac2g03121 Beta vulgaris
EL10Ac5g11107 Beta vulgaris
Eucgr.I02024 Eucalyptus grandis
Eucgr.K02508 Eucalyptus grandis
FAN02G2271 Fragaria x ananassa
FAN05G0550 Fragaria x ananassa
FAN08G3400 Fragaria x ananassa
FAN09G3525 Fragaria x ananassa
FAN13G1631 Fragaria x ananassa
FAN14G0287 Fragaria x ananassa
FAN14G1786 Fragaria x ananassa
FAN18G1290 Fragaria x ananassa
FvH4_5g14200 Fragaria vesca
FvH4_6g47110 Fragaria vesca
Glyma.04G132900 Glycine max
Glyma.11G158500 Glycine max
Glyma.13G057500 Glycine max
Glyma.19G028700 Glycine max
Gohir.A01G098400 Gossypium hirsutum
Gohir.A03G069400 Gossypium hirsutum
Gohir.A08G231800 Gossypium hirsutum
Gohir.A09G243200 Gossypium hirsutum
Gohir.A13G125800 Gossypium hirsutum
Gohir.D01G083000 Gossypium hirsutum
Gohir.D03G095900 Gossypium hirsutum
Gohir.D08G252200 Gossypium hirsutum
Gohir.D09G243900 Gossypium hirsutum
Gohir.D13G129600 Gossypium hirsutum
Gorai.002G108400 Gossypium raimondii
Gorai.003G100600 Gossypium raimondii
Gorai.004G268900 Gossypium raimondii
Gorai.006G267700 Gossypium raimondii
Gorai.013G145600 Gossypium raimondii
GSVIVG01007908001 Vitis vinifera
GSVIVG01012199001 Vitis vinifera
HanXRQChr09g0270191 Helianthus annuus
HanXRQChr15g0488771 Helianthus annuus
HanXRQChr16g0502291 Helianthus annuus
HanXRQChr17g0551761 Helianthus annuus
Haze_14447 Corylus avellana
Haze_14449 Corylus avellana
Haze_26636 Corylus avellana
Hma1.2p1_0029F.1_g018090 Hydrangea macrophylla
Hma1.2p1_0481F.1_g161990 Hydrangea macrophylla
HPP92_000932 Vanilla planifolia
HPP92_000959 Vanilla planifolia
Hund09873 Selenicereus undatus
Hund13157 Selenicereus undatus
Hund23097 Selenicereus undatus
Lalb_Chr02g0158981 Lupinus albus
Lalb_Chr06g0175021 Lupinus albus
Lalb_Chr21g0318401 Lupinus albus
Lalb_Chr21g0318411 Lupinus albus
Lj1g0011079 Lotus japonicus
Lj3g0009404 Lotus japonicus
Lj3g0024557 Lotus japonicus
Lsat_1_v5_gn_4_110620 Lactuca sativa
Lsat_1_v5_gn_4_170881 Lactuca sativa
Manes.01G097700 Manihot esculenta
Manes.01G116300 Manihot esculenta
Manes.02G053600 Manihot esculenta
Mapoly0002s0140 Marchantia polymorpha
MBI01_g44544_MAGBIO Magnolia biondii
MBI14_g41392_MAGBIO Magnolia biondii
MBI16_g19291_MAGBIO Magnolia biondii
MBI18_g19854_MAGBIO Magnolia biondii
MBI18_g27249_MAGBIO Magnolia biondii
MBI19_g05183_MAGBIO Magnolia biondii
MBI19_g46474_MAGBIO Magnolia biondii
MCO02G229 Micromonas commoda
MD06G1200400 Malus domestica
MD09G1063400 Malus domestica
MD09G1063800 Malus domestica
MD09G1064000 Malus domestica
MD14G1209900 Malus domestica
MD17G1057300 Malus domestica
Medtr3g013635 Medicago truncatula
Medtr8g040740 Medicago truncatula
MELO3C015841.2 Cucumis melo
MELO3C022027.2 Cucumis melo
MELO3C035637.2 Cucumis melo
Migut.H00640 Erythranthe guttata
Migut.K01280 Erythranthe guttata
MSTRG.15454 Avicennia marina
MSTRG.23891 Avicennia marina
MSTRG.3011 Avicennia marina
MSTRG.3350 Avicennia marina
Nitab4.5_0000152g0360 Nicotiana tabacum
Nitab4.5_0001230g0060 Nicotiana tabacum
Nitab4.5_0001410g0190 Nicotiana tabacum
Nitab4.5_0001961g0030 Nicotiana tabacum
Nitab4.5_0002563g0020 Nicotiana tabacum
Nitab4.5_0004284g0040 Nicotiana tabacum
Nitab4.5_0005014g0020 Nicotiana tabacum
Nitab4.5_0006375g0020 Nicotiana tabacum
Nitab4.5_0006893g0040 Nicotiana tabacum
Nitab4.5_0014725g0010 Nicotiana tabacum
Nn014s41464 Nelumbo nucifera
Nn014s41465 Nelumbo nucifera
Nn025s41562 Nelumbo nucifera
Nn1g06175 Nelumbo nucifera
Nn3g17408 Nelumbo nucifera
Nn4g23385 Nelumbo nucifera
Oeu000864.1 Olea europaea
Oeu007058.1 Olea europaea
Oeu010245.1 Olea europaea
Oeu023712.1 Olea europaea
Os03g0424500 Oryza sativa ssp. japonica
Os03g0424800 Oryza sativa ssp. japonica
Peaxi162Scf00201g00128 Petunia axillaris
Peaxi162Scf00525g00025 Petunia axillaris
Peaxi162Scf00702g00059 Petunia axillaris
PGR004G0114 Punica granatum
PGR044G0873 Punica granatum
PGSC0003DMG400015992 Solanum tuberosum
PGSC0003DMG400024546 Solanum tuberosum
Phvul.004G034800 Phaseolus vulgaris
Phvul.005G018600 Phaseolus vulgaris
Phvul.L003837 Phaseolus vulgaris
Potri.004G118800 Populus trichocarpa
Potri.015G056100 Populus trichocarpa
Potri.017G092200 Populus trichocarpa
Pp3c14_19640 Physcomitrium patens
Pp3c17_15200 Physcomitrium patens
Pp3c1_28780 Physcomitrium patens
Pp3c27_2780 Physcomitrium patens
Pp3c2_10060 Physcomitrium patens
PRCOL_00004296 Prasinoderma coloniale
Prupe.3G257000 Prunus persica
Prupe.5G203100 Prunus persica
Psat4g144160 Pisum sativum
Psat5g222960 Pisum sativum
PSO017G5317 Papaver somniferum
PSO017G5319 Papaver somniferum
PSO478G0990 Papaver somniferum
PSO478G2192 Papaver somniferum
QL02p027193 Quercus lobata
QL02p068539 Quercus lobata
QL09p002600 Quercus lobata
QL10p018886 Quercus lobata
QL10p018997 Quercus lobata
RcHm_v2.0_Chr2g0133791 Rosa chinensis
RcHm_v2.0_Chr2g0166161 Rosa chinensis
RcHm_v2.0_Chr7g0182731 Rosa chinensis
Rhsim08G0147700 Rhododendron simsii
Rhsim10G0043900 Rhododendron simsii
Rhsim12G0151900 Rhododendron simsii
Sabra04G0068700 Salix brachista
Sabra17G0081200 Salix brachista
SalBow1G6236 Salvia bowleyana
SalBow2G1808 Salvia bowleyana
SalBow2G2644 Salvia bowleyana
SalBow2G3391 Salvia bowleyana
SalBow8G3459 Salvia bowleyana
SalBow8G5150 Salvia bowleyana
Sc14g0006210 Simmondsia chinensis
Sed0005588 Sechium edule
Sed0014225 Sechium edule
Sed0016063 Sechium edule
Sed0017279 Sechium edule
SEGI_05694 Sequoiadendron giganteum
SGA_v2.0_scaffold154G37094 Striga asiatica
SGA_v2.0_scaffold26G11320 Striga asiatica
SGA_v2.0_scaffold291G47330 Striga asiatica
SGA_v2.0_scaffold32G13198 Striga asiatica
SGA_v2.0_scaffold4G02400 Striga asiatica
SGA_v2.0_scaffold52G19176 Striga asiatica
SGA_v2.0_scaffold93G28333 Striga asiatica
SMO203G0263 Selaginella moellendorffii
Solyc03g115360.3 Solanum lycopersicum
Solyc12g039120.2 Solanum lycopersicum
Sopen03g034360 Solanum pennellii
Sopen12g019420 Solanum pennellii
Sp2g24410 Schrenkiella parvula
Sp3g01140 Schrenkiella parvula
Sp6g28580 Schrenkiella parvula
Sp6g35020 Schrenkiella parvula
TAR371G0962 Trochodendron aralioides
TAR622G0543 Trochodendron aralioides
TAR629G1065 Trochodendron aralioides
THA.LOC104801290 Tarenaya hassleriana
THA.LOC104802966 Tarenaya hassleriana
THA.LOC104818339 Tarenaya hassleriana
THA.LOC104821006 Tarenaya hassleriana
THA.LOC104822336 Tarenaya hassleriana
Thecc.02G333700 Theobroma cacao
Thecc.03G098300 Theobroma cacao
Thecc.07G185900 Theobroma cacao
Thhalv10005090m.g Eutrema salsugineum
Thhalv10015994m.g Eutrema salsugineum
Thhalv10022439m.g Eutrema salsugineum
TPR.G1452 Trifolium pratense
TPR.G33441 Trifolium pratense
TPR.G8536 Trifolium pratense
TWI32G0725 Tripterygium wilfordii
TWI34G0944 Tripterygium wilfordii
TWI60G1001 Tripterygium wilfordii
unitig_32.g11772 Utricularia gibba
vmacro03820 Vaccinium macrocarpon
vmacro05653 Vaccinium macrocarpon
vmacro17593 Vaccinium macrocarpon
vmacro17594 Vaccinium macrocarpon
vmacro17595 Vaccinium macrocarpon
VMungo0464G0553 Vigna mungo
VMungo1080G1232 Vigna mungo
VMungo1215G0003 Vigna mungo
Zm00001eb020200 Zea mays
Zm00001eb393200 Zea mays

User provided reference genes

Program Settings