Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p24590 Brassica napus
A06p17980 Brassica napus
A06p32680 Brassica napus
A09p09190 Brassica napus
Aa31LG1G16260 Aethionema arabicum
Aa31LG4G18200 Aethionema arabicum
Actinidia00339 Actinidia chinensis
Actinidia02427 Actinidia chinensis
Actinidia10233 Actinidia chinensis
Actinidia11958 Actinidia chinensis
Actinidia20671 Actinidia chinensis
Actinidia36416 Actinidia chinensis
Ah.02g125270 Amaranthus hybridus
Ah.03g140770 Amaranthus hybridus
AL5G29670 Arabidopsis lyrata
AL8G43530 Arabidopsis lyrata
Aqoxy3G00667 Aquilegia oxysepala
Aqoxy3G01358 Aquilegia oxysepala
Aqoxy6G02955 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.599BJN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7JMH03 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D7034C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IM67PL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L6GS5S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T997JY Arachis hypogaea
AT3G49720 Arabidopsis thaliana
AT5G65810 Arabidopsis thaliana
ATR0019G041 Amborella trichopoda
ATR0165G007 Amborella trichopoda
Atru.chr13.883 Acer truncatum
Atru.chr3.1074 Acer truncatum
Atru.chr5.2192 Acer truncatum
AUR62007551 Chenopodium quinoa
AUR62027050 Chenopodium quinoa
AUR62030893 Chenopodium quinoa
BcaB01g00679 Brassica carinata
BcaB02g09899 Brassica carinata
BcaB04g17697 Brassica carinata
BcaB04g20031 Brassica carinata
BcaB04g20034 Brassica carinata
BcaB05g23146 Brassica carinata
BcaC01g02832 Brassica carinata
BcaC06g33125 Brassica carinata
BcaC07g39435 Brassica carinata
BcaC09g49967 Brassica carinata
BolC1t03002H Brassica oleracea
BolC3t18249H Brassica oleracea
BolC8t50088H Brassica oleracea
BolC9t53968H Brassica oleracea
BraA01t02369Z Brassica rapa
BraA06t24889Z Brassica rapa
BraA06t26197Z Brassica rapa
BraA09t36571Z Brassica rapa
C01p30670 Brassica napus
C01p30680 Brassica napus
C08p24740 Brassica napus
C09p10720 Brassica napus
CAN.G1343.14 Capsicum annuum
CAN.G416.7 Capsicum annuum
CAN.G504.29 Capsicum annuum
CANSAT25G0750 Cannabis sativa
CANSAT25G1684 Cannabis sativa
CARHR158790 Cardamine hirsuta
CARHR279820 Cardamine hirsuta
Carub.0005s1607 Capsella rubella
Carub.0008s2670 Capsella rubella
Ca_00199_v3 Cicer arietinum L.
Ca_06990_v3 Cicer arietinum L.
Ca_22092_v3 Cicer arietinum L.
Cc02_g20330 Coffea canephora
Cc07_g07450 Coffea canephora
Cc07_g07470 Coffea canephora
Cc10_g07770 Coffea canephora
CDE02G1499 Ceratophyllum demersum
CDE04G3089 Ceratophyllum demersum
CDE06G2321 Ceratophyllum demersum
CDE07G0244 Ceratophyllum demersum
Cfa004750 Carpinus fangiana
Cfa006782 Carpinus fangiana
Ciclev10003219m.g Citrus clementina
Ciclev10026305m.g Citrus clementina
Ciclev10029788m.g Citrus clementina
Ciclev10029851m.g Citrus clementina
CiPaw.05G023500 Carya illinoinensis
CiPaw.07G037400 Carya illinoinensis
CiPaw.07G170900 Carya illinoinensis
ClCG01G017860 Citrullus lanatus
ClCG02G007360 Citrullus lanatus
ClCG10G009870 Citrullus lanatus
COL.COLO4_11628 Corchorus olitorius
COL.COLO4_17820 Corchorus olitorius
COL.COLO4_28447 Corchorus olitorius
Cpa.g.sc129.62 Carica papaya
Cpa.g.sc20.75 Carica papaya
CsaV3_4G014570 Cucumis sativus L.
CsaV3_5G037120 Cucumis sativus L.
CsaV3_6G044390 Cucumis sativus L.
CsaV3_7G007540 Cucumis sativus L.
CSS0008151 Camellia sinensis var. sinensis
CSS0010530 Camellia sinensis var. sinensis
CSS0015072 Camellia sinensis var. sinensis
CSS0025154 Camellia sinensis var. sinensis
CSS0025548 Camellia sinensis var. sinensis
CSS0040974 Camellia sinensis var. sinensis
CSS0043427 Camellia sinensis var. sinensis
CSS0044662 Camellia sinensis var. sinensis
DCAR_025827 Daucus carota
DCAR_029856 Daucus carota
Dinv09515 Davidia involucrata
Dinv16057 Davidia involucrata
Dinv23056 Davidia involucrata
Dinv26966 Davidia involucrata
Dinv39197 Davidia involucrata
Dinv44923 Davidia involucrata
Duzib052G0568 Durio zibethinus
Duzib116G0699 Durio zibethinus
Duzib147G0470 Durio zibethinus
Duzib187G0761 Durio zibethinus
Duzib264G0594 Durio zibethinus
ECA232G2997 Erigeron canadensis
ECA236G0406 Erigeron canadensis
ECA240G1008 Erigeron canadensis
ECA246G3029 Erigeron canadensis
EL10Ac6g15581 Beta vulgaris
EL10Ac9g22158 Beta vulgaris
Eucgr.G01127 Eucalyptus grandis
Eucgr.H02338 Eucalyptus grandis
FAN15G1740 Fragaria x ananassa
FAN19G0474 Fragaria x ananassa
FAN23G1080 Fragaria x ananassa
FAN24G2773 Fragaria x ananassa
FAN24G3287 Fragaria x ananassa
FAN26G0279 Fragaria x ananassa
FAN27G0120 Fragaria x ananassa
FAN28G0172 Fragaria x ananassa
FvH4_1g18360 Fragaria vesca
FvH4_2g02740 Fragaria vesca
FvH4_5g34600 Fragaria vesca
Glyma.04G048600 Glycine max
Glyma.05G108800 Glycine max
Glyma.06G049700 Glycine max
Glyma.13G252700 Glycine max
Glyma.14G090600 Glycine max
Glyma.15G062200 Glycine max
Glyma.17G158200 Glycine max
Glyma.17G232240 Glycine max
Gohir.A01G179800 Gossypium hirsutum
Gohir.A02G149000 Gossypium hirsutum
Gohir.A02G149100 Gossypium hirsutum
Gohir.A05G212700 Gossypium hirsutum
Gohir.A11G211500 Gossypium hirsutum
Gohir.D01G170600 Gossypium hirsutum
Gohir.D03G031200 Gossypium hirsutum
Gohir.D03G031300 Gossypium hirsutum
Gohir.D05G215900 Gossypium hirsutum
Gohir.D11G211600 Gossypium hirsutum
Gorai.002G212400 Gossypium raimondii
Gorai.003G032800 Gossypium raimondii
Gorai.003G032900 Gossypium raimondii
Gorai.007G227300 Gossypium raimondii
Gorai.009G222600 Gossypium raimondii
GSVIVG01002452001 Vitis vinifera
GSVIVG01002531001 Vitis vinifera
GSVIVG01009285001 Vitis vinifera
GSVIVG01036990001 Vitis vinifera
HanXRQChr03g0073901 Helianthus annuus
HanXRQChr09g0262041 Helianthus annuus
HanXRQChr10g0319881 Helianthus annuus
HanXRQChr11g0323591 Helianthus annuus
HanXRQChr12g0377001 Helianthus annuus
HanXRQChr14g0447721 Helianthus annuus
HanXRQChr15g0495671 Helianthus annuus
Haze_03975 Corylus avellana
Haze_10347 Corylus avellana
Haze_22371 Corylus avellana
HPP92_000731 Vanilla planifolia
HPP92_015383 Vanilla planifolia
Hund00410 Selenicereus undatus
Hund06494 Selenicereus undatus
Hund13969 Selenicereus undatus
Hund16423 Selenicereus undatus
Lalb_Chr15g0090201 Lupinus albus
Lalb_Chr18g0060181 Lupinus albus
Lalb_Chr22g0355851 Lupinus albus
Lalb_Chr24g0399551 Lupinus albus
Lj4A166T81 Lonicera japonica
Lj4A77T51 Lonicera japonica
Lj4g0025551 Lotus japonicus
Lj5C223T6 Lonicera japonica
Lj5g0026734 Lotus japonicus
Lj6g0011290 Lotus japonicus
Lj9A339T50 Lonicera japonica
Lsat_1_v5_gn_3_52780 Lactuca sativa
Lsat_1_v5_gn_4_158361 Lactuca sativa
Lsat_1_v5_gn_7_84280 Lactuca sativa
Lsat_1_v5_gn_9_113581 Lactuca sativa
Manes.07G050100 Manihot esculenta
Manes.12G118400 Manihot esculenta
Mapoly0082s0061 Marchantia polymorpha
MBI16_g09815_MAGBIO Magnolia biondii
MD02G1190800 Malus domestica
MD05G1110700 Malus domestica
MD08G1076600 Malus domestica
MD10G1114200 Malus domestica
MD15G1063900 Malus domestica
MD15G1301800 Malus domestica
Medtr1g017220 Medicago truncatula
Medtr2g010540 Medicago truncatula
Medtr3g109730 Medicago truncatula
Medtr4g097530 Medicago truncatula
MELO3C007661.2 Cucumis melo
MELO3C018036.2 Cucumis melo
MELO3C018548.2 Cucumis melo
MELO3C026685.2 Cucumis melo
Migut.B00494 Erythranthe guttata
Migut.N01118 Erythranthe guttata
Migut.N02803 Erythranthe guttata
MSTRG.22202 Avicennia marina
MSTRG.24395 Avicennia marina
MSTRG.27773 Avicennia marina
MSTRG.5309 Avicennia marina
Nitab4.5_0000142g0440 Nicotiana tabacum
Nitab4.5_0000730g0090 Nicotiana tabacum
Nitab4.5_0000776g0030 Nicotiana tabacum
Nitab4.5_0001477g0140 Nicotiana tabacum
Nitab4.5_0001494g0110 Nicotiana tabacum
Nitab4.5_0002254g0030 Nicotiana tabacum
Nitab4.5_0004008g0060 Nicotiana tabacum
Nitab4.5_0004861g0010 Nicotiana tabacum
Nitab4.5_0004861g0050 Nicotiana tabacum
Nitab4.5_0012245g0020 Nicotiana tabacum
Nn5g30687 Nelumbo nucifera
Nn6g34546 Nelumbo nucifera
Oeu008563.1 Olea europaea
Oeu010476.1 Olea europaea
Oeu011413.1 Olea europaea
Oeu013347.1 Olea europaea
Oeu034348.1 Olea europaea
Oeu059870.1 Olea europaea
Os01g0144000 Oryza sativa ssp. japonica
Peaxi162Scf00003g02932 Petunia axillaris
Peaxi162Scf00016g03350 Petunia axillaris
Peaxi162Scf00096g01837 Petunia axillaris
Peaxi162Scf01161g00326 Petunia axillaris
PGR004G2803 Punica granatum
PGR042G2239 Punica granatum
PGR102G0449 Punica granatum
PGSC0003DMG400004924 Solanum tuberosum
PGSC0003DMG400005106 Solanum tuberosum
PGSC0003DMG400021427 Solanum tuberosum
PGSC0003DMG400026782 Solanum tuberosum
Phvul.001G031800 Phaseolus vulgaris
Phvul.003G232500 Phaseolus vulgaris
Phvul.006G197600 Phaseolus vulgaris
Phvul.L001795 Phaseolus vulgaris
Potri.001G288200 Populus trichocarpa
Potri.002G114000 Populus trichocarpa
Potri.009G082400 Populus trichocarpa
Pp3c12_13990 Physcomitrium patens
Prupe.1G417900 Prunus persica
Prupe.6G215300 Prunus persica
Prupe.8G155700 Prunus persica
Psat1g211800 Pisum sativum
Psat4g080240 Pisum sativum
Psat6g018680 Pisum sativum
PSO017G2757 Papaver somniferum
PSO170G2731 Papaver somniferum
PSO541G3326 Papaver somniferum
PSO675G3858 Papaver somniferum
QL06p038621 Quercus lobata
QL09p016121 Quercus lobata
QL11p027835 Quercus lobata
QL11p033289 Quercus lobata
RcHm_v2.0_Chr2g0109071 Rosa chinensis
RcHm_v2.0_Chr6g0247201 Rosa chinensis
Rhsim10G0094300 Rhododendron simsii
Rhsim11G0124800 Rhododendron simsii
Rhsim11G0147400 Rhododendron simsii
Sabra02G0090300 Salix brachista
Sabra09G0063900 Salix brachista
Sabra16G0180400 Salix brachista
SalBow2G1420 Salvia bowleyana
SalBow6G4503 Salvia bowleyana
SalBow7G0445 Salvia bowleyana
Sc03g0002900 Simmondsia chinensis
Sc08g0004260 Simmondsia chinensis
Sc16g0002780 Simmondsia chinensis
Sed0001844 Sechium edule
Sed0013685 Sechium edule
Sed0016227 Sechium edule
Sed0027012 Sechium edule
Sed0027374 Sechium edule
SEGI_07038 Sequoiadendron giganteum
SEGI_11717 Sequoiadendron giganteum
SGA_v2.0_scaffold152G36857 Striga asiatica
SGA_v2.0_scaffold219G42546 Striga asiatica
SGA_v2.0_scaffold337G49176 Striga asiatica
SGA_v2.0_scaffold337G49178 Striga asiatica
SHI04893 Sapria himalayana
SHI04894 Sapria himalayana
SHI04896 Sapria himalayana
SMO367G0249 Selaginella moellendorffii
Solyc01g106580.3 Solanum lycopersicum
Solyc02g092000.3 Solanum lycopersicum
Solyc04g077420.4 Solanum lycopersicum
Solyc10g047960.3 Solanum lycopersicum
Sopen01g048930 Solanum pennellii
Sopen02g036580 Solanum pennellii
Sopen04g031010 Solanum pennellii
Sopen10g018930 Solanum pennellii
Sp2g28900 Schrenkiella parvula
Sp5g12370 Schrenkiella parvula
TAR376G0544 Trochodendron aralioides
TAR381G0747 Trochodendron aralioides
TAR628G1684 Trochodendron aralioides
THA.LOC104798342 Tarenaya hassleriana
THA.LOC104799836 Tarenaya hassleriana
THA.LOC104806042 Tarenaya hassleriana
THA.LOC104819274 Tarenaya hassleriana
THA.LOC104821216 Tarenaya hassleriana
THA.LOC104825798 Tarenaya hassleriana
Thecc.01G077700 Theobroma cacao
Thecc.02G033700 Theobroma cacao
Thecc.08G083000 Theobroma cacao
Thhalv10004790m.g Eutrema salsugineum
Thhalv10010641m.g Eutrema salsugineum
TPR.G13170 Trifolium pratense
TPR.G32626 Trifolium pratense
TPR.G3707 Trifolium pratense
TPR.G3741 Trifolium pratense
TWI53G1934 Tripterygium wilfordii
TWI56G0521 Tripterygium wilfordii
TWI74G1675 Tripterygium wilfordii
TWI77G0354 Tripterygium wilfordii
unitig_578.g16166 Utricularia gibba
unitig_747.g21251 Utricularia gibba
unitig_8.g3414 Utricularia gibba
unitig_8.g4860 Utricularia gibba
vmacro01923 Vaccinium macrocarpon
vmacro05377 Vaccinium macrocarpon
VMungo0251G1908 Vigna mungo
VMungo0540G0333 Vigna mungo
VMungo0647G1156 Vigna mungo
VMungo1309G2100 Vigna mungo
Zm00001eb124530 Zea mays
Zm00001eb335800 Zea mays

User provided reference genes

Program Settings