Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p01160 Brassica napus
A02p44060 Brassica napus
A03p65640 Brassica napus
A06p32530 Brassica napus
A06p32540 Brassica napus
Aa31LG1G16390 Aethionema arabicum
Aa31LG6G14780 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2774 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.886 Anthoceros agrestis
Actinidia10258 Actinidia chinensis
Actinidia19263 Actinidia chinensis
Actinidia19264 Actinidia chinensis
Actinidia36389 Actinidia chinensis
Ah.03g134440 Amaranthus hybridus
AL7G12810 Arabidopsis lyrata
AL8G43320 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.1J87LA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.461IDR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.864M36 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8J1A4Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.979X0J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BF3XS4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BMN4NJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DT0NNH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EGC2WW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KX4I0B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PP5348 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SE0DEY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U84WIL Arachis hypogaea
AT4G37870 Arabidopsis thaliana
AT5G65690 Arabidopsis thaliana
ATR0144G008 Amborella trichopoda
ATR0144G009 Amborella trichopoda
ATR0144G011 Amborella trichopoda
ATR0144G014 Amborella trichopoda
ATR0144G019 Amborella trichopoda
ATR0144G025 Amborella trichopoda
ATR0144G026 Amborella trichopoda
ATR0265G001 Amborella trichopoda
ATR0591G001 Amborella trichopoda
ATR0591G002 Amborella trichopoda
ATR0591G003 Amborella trichopoda
ATR0767G130 Amborella trichopoda
ATR0767G210 Amborella trichopoda
ATR1004G001 Amborella trichopoda
ATR1004G002 Amborella trichopoda
ATR1060G001 Amborella trichopoda
Atru.chr13.935 Acer truncatum
Atru.chr3.1128 Acer truncatum
Atru.chr3.1137 Acer truncatum
AUR62005878 Chenopodium quinoa
AUR62032871 Chenopodium quinoa
BcaC01g02812 Brassica carinata
BcaC01g02845 Brassica carinata
BcaC03g18351 Brassica carinata
BcaC03g18352 Brassica carinata
BcaNung00966 Brassica carinata
BolC1t00128H Brassica oleracea
BolC2t12495H Brassica oleracea
BolC3t18265H Brassica oleracea
BolC7t46683H Brassica oleracea
BraA01t00114Z Brassica rapa
BraA02t09329Z Brassica rapa
BraA03t15617Z Brassica rapa
BraA06t26183Z Brassica rapa
C01p01320 Brassica napus
C02p64310 Brassica napus
C03p60010 Brassica napus
C07p62690 Brassica napus
CAN.G437.1 Capsicum annuum
CAN.G723.30 Capsicum annuum
CANSAT01G3028 Cannabis sativa
CANSAT56G2513 Cannabis sativa
CARHR246260 Cardamine hirsuta
CARHR279650 Cardamine hirsuta
Carub.0007s0236 Capsella rubella
Carub.0008s2656 Capsella rubella
Ca_06072_v3 Cicer arietinum L.
Ca_22637_v3 Cicer arietinum L.
CBR_g17706 Chara braunii
CBR_g23758 Chara braunii
CBR_g23761 Chara braunii
CBR_g32179 Chara braunii
CBR_g36910 Chara braunii
CBR_g38782 Chara braunii
CBR_g45174 Chara braunii
CBR_g45177 Chara braunii
CBR_g45178 Chara braunii
CBR_g45179 Chara braunii
CBR_g45181 Chara braunii
CBR_g45182 Chara braunii
CBR_g45184 Chara braunii
CBR_g45185 Chara braunii
CBR_g45222 Chara braunii
CBR_g45223 Chara braunii
CBR_g76550 Chara braunii
Cc00_g28180 Coffea canephora
Cc07_g07730 Coffea canephora
Cc10_g08160 Coffea canephora
CDE02G1150 Ceratophyllum demersum
CDE07G0509 Ceratophyllum demersum
CDE07G2027 Ceratophyllum demersum
Cfa001630 Carpinus fangiana
Cfa006815 Carpinus fangiana
Ciclev10000510m.g Citrus clementina
Ciclev10025088m.g Citrus clementina
CiPaw.07G041400 Carya illinoinensis
CiPaw.07G160800 Carya illinoinensis
CiPaw.08G147000 Carya illinoinensis
ClCG01G018100 Citrullus lanatus
ClCG10G008730 Citrullus lanatus
ClCG11G014850 Citrullus lanatus
COL.COLO4_01138 Corchorus olitorius
COL.COLO4_11666 Corchorus olitorius
COL.COLO4_35336 Corchorus olitorius
Cpa.g.sc129.27 Carica papaya
Cpa.g.sc160.2 Carica papaya
Cre02.g141400 Chlamydomonas reinhardtii
CsaV3_3G048280 Cucumis sativus L.
CsaV3_6G044640 Cucumis sativus L.
CSS0030330 Camellia sinensis var. sinensis
CSS0034327 Camellia sinensis var. sinensis
DCAR_012840 Daucus carota
DCAR_025844 Daucus carota
Dinv04510 Davidia involucrata
Dinv26993 Davidia involucrata
Dinv36992 Davidia involucrata
Dinv44892 Davidia involucrata
Duzib093G1948 Durio zibethinus
Duzib147G1633 Durio zibethinus
Duzib187G0826 Durio zibethinus
Duzib187G1550 Durio zibethinus
Duzib187G1648 Durio zibethinus
Duzib264G1006 Durio zibethinus
ECA238G3215 Erigeron canadensis
ECA246G3564 Erigeron canadensis
EL10Ac6g13295 Beta vulgaris
Eucgr.I00628 Eucalyptus grandis
FAN01G1657 Fragaria x ananassa
FAN03G1214 Fragaria x ananassa
FAN04G2625 Fragaria x ananassa
FAN06G4517 Fragaria x ananassa
FAN08G3435 Fragaria x ananassa
FAN10G2524 Fragaria x ananassa
FAN12G2186 Fragaria x ananassa
FAN12G2460 Fragaria x ananassa
FAN15G3375 Fragaria x ananassa
FAN17G1988 Fragaria x ananassa
FAN18G4197 Fragaria x ananassa
FAN19G0277 Fragaria x ananassa
FAN19G1912 Fragaria x ananassa
FAN20G1043 Fragaria x ananassa
FAN22G0762 Fragaria x ananassa
FAN23G0588 Fragaria x ananassa
FAN23G0823 Fragaria x ananassa
FAN23G1799 Fragaria x ananassa
FAN23G2023 Fragaria x ananassa
FAN26G0111 Fragaria x ananassa
FAN26G0256 Fragaria x ananassa
FAN26G2025 Fragaria x ananassa
FAN26G2462 Fragaria x ananassa
FAN28G2882 Fragaria x ananassa
FvH4_1g18831 Fragaria vesca
FvH4_1g18850 Fragaria vesca
FvH4_1g24561 Fragaria vesca
FvH4_1g24570 Fragaria vesca
FvH4_4g10540 Fragaria vesca
FvH4_5g33740 Fragaria vesca
FvH4_7g04810 Fragaria vesca
Glyma.01G019200 Glycine max
Glyma.01G097400 Glycine max
Glyma.04G089700 Glycine max
Glyma.06G091500 Glycine max
Glyma.08G273100 Glycine max
Glyma.08G273150 Glycine max
Glyma.09G203500 Glycine max
Gohir.A02G146900 Gossypium hirsutum
Gohir.A11G209600 Gossypium hirsutum
Gohir.A12G082000 Gossypium hirsutum
Gohir.D03G033600 Gossypium hirsutum
Gohir.D11G213400 Gossypium hirsutum
Gohir.D12G079000 Gossypium hirsutum
Gorai.003G035200 Gossypium raimondii
Gorai.007G229400 Gossypium raimondii
Gorai.008G087900 Gossypium raimondii
GSVIVG01005596001 Vitis vinifera
GSVIVG01006166001 Vitis vinifera
HanXRQChr05g0163651 Helianthus annuus
HanXRQChr10g0301811 Helianthus annuus
HanXRQChr14g0447051 Helianthus annuus
Haze_03943 Corylus avellana
Haze_22511 Corylus avellana
HPP92_002771 Vanilla planifolia
HPP92_007343 Vanilla planifolia
Hund24908 Selenicereus undatus
Lalb_Chr05g0216151 Lupinus albus
Lalb_Chr05g0228821 Lupinus albus
Lalb_Chr05g0228831 Lupinus albus
Lalb_Chr05g0228841 Lupinus albus
Lalb_Chr08g0242701 Lupinus albus
Lalb_Chr09g0325731 Lupinus albus
Lalb_Chr16g0392061 Lupinus albus
Lj1g0000624 Lotus japonicus
Lj2C427T7 Lonicera japonica
Lj2g0012739 Lotus japonicus
Lj4A746T57 Lonicera japonica
Lsat_1_v5_gn_2_82001 Lactuca sativa
Lsat_1_v5_gn_6_106641 Lactuca sativa
Manes.12G120100 Manihot esculenta
Manes.13G105000 Manihot esculenta
Manes.18G054615 Manihot esculenta
Mapoly0012s0010 Marchantia polymorpha
Mapoly0012s0074 Marchantia polymorpha
Mapoly0049s0126 Marchantia polymorpha
MBI16_g20889_MAGBIO Magnolia biondii
MBI16_g20890_MAGBIO Magnolia biondii
MBI16_g26723_MAGBIO Magnolia biondii
MD01G1046200 Malus domestica
MD04G1109800 Malus domestica
MD08G1207000 Malus domestica
MD10G1043800 Malus domestica
MD13G1249600 Malus domestica
MD15G1391200 Malus domestica
MD15G1405400 Malus domestica
MD17G1274500 Malus domestica
Medtr3g111120 Medicago truncatula
Medtr5g030620 Medicago truncatula
Medtr5g430730 Medicago truncatula
Medtr8g067275 Medicago truncatula
MELO3C003491.2 Cucumis melo
MELO3C007687.2 Cucumis melo
MELO3C018994.2 Cucumis melo
Migut.C00414 Erythranthe guttata
Migut.H00303 Erythranthe guttata
Migut.L00445 Erythranthe guttata
Migut.N02830 Erythranthe guttata
Migut.O00438 Erythranthe guttata
MSTRG.26855 Avicennia marina
MSTRG.3502 Avicennia marina
Nitab4.5_0000377g0180 Nicotiana tabacum
Nitab4.5_0001074g0080 Nicotiana tabacum
Nitab4.5_0006676g0010 Nicotiana tabacum
Nitab4.5_0017169g0010 Nicotiana tabacum
Nn1g02526 Nelumbo nucifera
Nn1g05772 Nelumbo nucifera
Nn2g12963 Nelumbo nucifera
Nn3g19351 Nelumbo nucifera
Nn5g29751 Nelumbo nucifera
Oeu008652.1 Olea europaea
Oeu008653.1 Olea europaea
Oeu024998.1 Olea europaea
Oeu059813.2 Olea europaea
Os03g0255500 Oryza sativa ssp. japonica
Os10g0204300 Oryza sativa ssp. japonica
Os10g0204400 Oryza sativa ssp. japonica
Peaxi162Scf00160g00834 Petunia axillaris
Peaxi162Scf00626g00720 Petunia axillaris
PGR031G0521 Punica granatum
PGSC0003DMG400002041 Solanum tuberosum
PGSC0003DMG400002042 Solanum tuberosum
PGSC0003DMG400006391 Solanum tuberosum
PGSC0003DMG400016094 Solanum tuberosum
Phvul.002G139200 Phaseolus vulgaris
Phvul.003G285900 Phaseolus vulgaris
Potri.002G107700 Populus trichocarpa
Potri.007G011200 Populus trichocarpa
Pp3c13_4250 Physcomitrium patens
Pp3c26_4630 Physcomitrium patens
Pp3c3_5810 Physcomitrium patens
Pp3c4_25090 Physcomitrium patens
PRCOL_00006889 Prasinoderma coloniale
Prupe.1G541200 Prunus persica
Prupe.6G210900 Prunus persica
Prupe.6G211000 Prunus persica
Psat2g135640 Pisum sativum
Psat4g120760 Pisum sativum
PSO210G0250 Papaver somniferum
PSO210G1942 Papaver somniferum
PSO210G4666 Papaver somniferum
PSO210G6198 Papaver somniferum
PSO675G1514 Papaver somniferum
PSO675G6641 Papaver somniferum
PSO675G8509 Papaver somniferum
PSO761G0614 Papaver somniferum
QL06p037674 Quercus lobata
QL12p040186 Quercus lobata
RcHm_v2.0_Chr2g0109711 Rosa chinensis
RcHm_v2.0_Chr2g0109721 Rosa chinensis
RcHm_v2.0_Chr5g0054131 Rosa chinensis
RcHm_v2.0_Chr5g0054141 Rosa chinensis
RcHm_v2.0_Chr5g0054151 Rosa chinensis
RcHm_v2.0_Chr7g0233021 Rosa chinensis
Rhsim06G0068700 Rhododendron simsii
Rhsim10G0082200 Rhododendron simsii
Sabra02G0084600 Salix brachista
Sabra07G0008700 Salix brachista
SalBow2G2292 Salvia bowleyana
SalBow3G2390 Salvia bowleyana
SalBow7G0750 Salvia bowleyana
SalBow7G1040 Salvia bowleyana
Sc03g0000630 Simmondsia chinensis
Sc16g0000780 Simmondsia chinensis
Sed0002160 Sechium edule
Sed0014354 Sechium edule
Sed0017512 Sechium edule
SEGI_21035 Sequoiadendron giganteum
SEGI_34281 Sequoiadendron giganteum
SEGI_40289 Sequoiadendron giganteum
SGA_v2.0_scaffold12G06047 Striga asiatica
SGA_v2.0_scaffold149G36541 Striga asiatica
SGA_v2.0_scaffold236G43725 Striga asiatica
SGA_v2.0_scaffold28G11871 Striga asiatica
SGA_v2.0_scaffold47G17709 Striga asiatica
SHI35409 Sapria himalayana
SMO356G0196 Selaginella moellendorffii
Solyc04g076880.3 Solanum lycopersicum
Solyc12g088160.3 Solanum lycopersicum
Sopen04g030640 Solanum pennellii
Sopen04g030650 Solanum pennellii
Sopen12g030140 Solanum pennellii
Sopen12g030150 Solanum pennellii
Sopen12g030160 Solanum pennellii
Sp2g28770 Schrenkiella parvula
Sp7g35510 Schrenkiella parvula
TAR376G0835 Trochodendron aralioides
TAR628G0696 Trochodendron aralioides
THA.LOC104798690 Tarenaya hassleriana
THA.LOC104798697 Tarenaya hassleriana
THA.LOC104824928 Tarenaya hassleriana
Thecc.01G082200 Theobroma cacao
Thecc.08G077900 Theobroma cacao
Thhalv10003764m.g Eutrema salsugineum
Thhalv10026770m.g Eutrema salsugineum
TPR.G1025 Trifolium pratense
TPR.G1059 Trifolium pratense
TPR.G12454 Trifolium pratense
TPR.G15267 Trifolium pratense
TWI12G1043 Tripterygium wilfordii
TWI74G0596 Tripterygium wilfordii
unitig_32.g10647 Utricularia gibba
unitig_88.g27799 Utricularia gibba
vmacro05474 Vaccinium macrocarpon
vmacro21372 Vaccinium macrocarpon
VMungo0251G3791 Vigna mungo
VMungo1215G0503 Vigna mungo
Zm00001eb011080 Zea mays
Zm00001eb333390 Zea mays
Zm00001eb333420 Zea mays
Zm00001eb398370 Zea mays

User provided reference genes

Program Settings