Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p26960 Brassica napus
A06p38110 Brassica napus
A08p37140 Brassica napus
A09p05000 Brassica napus
A09p20820 Brassica napus
Aa31LG11G8520 Aethionema arabicum
Aa31LG1G20840 Aethionema arabicum
Aa31LG2G12330 Aethionema arabicum
Aa31LG3G8860 Aethionema arabicum
Aa31LG5G3180 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.48 Anthoceros agrestis
Actinidia03297 Actinidia chinensis
Actinidia09531 Actinidia chinensis
Actinidia34756 Actinidia chinensis
Actinidia38936 Actinidia chinensis
Actinidia38937 Actinidia chinensis
Ah.04g163220 Amaranthus hybridus
Ah.04g163230 Amaranthus hybridus
Ah.06g191890 Amaranthus hybridus
AL1G13570 Arabidopsis lyrata
AL1G64860 Arabidopsis lyrata
AL5G20990 Arabidopsis lyrata
AL5G21100 Arabidopsis lyrata
AL6G40920 Arabidopsis lyrata
AL6G40930 Arabidopsis lyrata
AL8G15960 Arabidopsis lyrata
Aqoxy2G03688 Aquilegia oxysepala
Aqoxy5G00204 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2K4F1W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4PHK1T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BVC656 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CJC9JS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CRK2RL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D9JYZL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F9GRMB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H1NN1G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M75XKZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YB1QTB Arachis hypogaea
AT1G03960 Arabidopsis thaliana
AT1G54450 Arabidopsis thaliana
AT5G28850 Arabidopsis thaliana
AT5G28900 Arabidopsis thaliana
AT5G44090 Arabidopsis thaliana
ATR0736G054 Amborella trichopoda
ATR0772G049 Amborella trichopoda
Atru.chr2.990 Acer truncatum
Atru.chr4.2039 Acer truncatum
Atru.chr5.1738_Atru.chr5.1739 Acer truncatum
AUR62004847 Chenopodium quinoa
AUR62040931 Chenopodium quinoa
BcaB04g19634 Brassica carinata
BcaB04g20135 Brassica carinata
BcaB07g30973 Brassica carinata
BcaB07g34171 Brassica carinata
BcaC04g21868 Brassica carinata
BcaC04g23719 Brassica carinata
BcaC06g30689 Brassica carinata
BcaC09g49623 Brassica carinata
BcaNung02113 Brassica carinata
BcaNung05488 Brassica carinata
BolC1t03408H Brassica oleracea
BolC7t44547H Brassica oleracea
BolC8t46886H Brassica oleracea
BolC9t53468H Brassica oleracea
BolC9t55538H Brassica oleracea
BraA01t02831Z Brassica rapa
BraA06t26725Z Brassica rapa
BraA08t35613Z Brassica rapa
BraA09t36139Z Brassica rapa
BraA09t37685Z Brassica rapa
C01p34380 Brassica napus
C07p40100 Brassica napus
C08p00880 Brassica napus
C09p05410 Brassica napus
C09p26350 Brassica napus
CAN.G1465.12 Capsicum annuum
CAN.G71.10 Capsicum annuum
CAN.G786.41 Capsicum annuum
CANSAT01G0460 Cannabis sativa
CANSAT54G0787 Cannabis sativa
CARHR055560 Cardamine hirsuta
CARHR179190 Cardamine hirsuta
CARHR185360 Cardamine hirsuta
CARHR185380 Cardamine hirsuta
CARHR185390 Cardamine hirsuta
Carub.0001s0311 Capsella rubella
Carub.0002s0938 Capsella rubella
Carub.0007s3767 Capsella rubella
Carub.0008s0444 Capsella rubella
Ca_09450_v3 Cicer arietinum L.
Ca_09464_v3 Cicer arietinum L.
Ca_09860_v3 Cicer arietinum L.
Ca_10013_v3 Cicer arietinum L.
CBR_g22338 Chara braunii
Cc02_g08790 Coffea canephora
CDE03G0032 Ceratophyllum demersum
CDE04G0263 Ceratophyllum demersum
CDE04G1429 Ceratophyllum demersum
CDE04G2353 Ceratophyllum demersum
Cfa002450 Carpinus fangiana
Cfa006357 Carpinus fangiana
Ciclev10007050m.g Citrus clementina
Ciclev10019630m.g Citrus clementina
Ciclev10024489m.g Citrus clementina
CiPaw.03G267000 Carya illinoinensis
CiPaw.04G188300 Carya illinoinensis
CiPaw.07G073100 Carya illinoinensis
ClCG06G007070 Citrullus lanatus
ClCG11G010610 Citrullus lanatus
COL.COLO4_03491 Corchorus olitorius
COL.COLO4_03665 Corchorus olitorius
COL.COLO4_15491 Corchorus olitorius
COL.COLO4_15492 Corchorus olitorius
COL.COLO4_15889 Corchorus olitorius
COL.COLO4_16260 Corchorus olitorius
COL.COLO4_29133 Corchorus olitorius
Cpa.g.sc165.25 Carica papaya
Cpa.g.sc306.9 Carica papaya
Cre01.g036150 Chlamydomonas reinhardtii
Cre06.g260600 Chlamydomonas reinhardtii
CsaV3_2G009800 Cucumis sativus L.
CsaV3_2G012690 Cucumis sativus L.
CSS0001045 Camellia sinensis var. sinensis
CSS0015573 Camellia sinensis var. sinensis
CSS0023528 Camellia sinensis var. sinensis
DCAR_018500 Daucus carota
DCAR_023090 Daucus carota
Dinv22387 Davidia involucrata
Dinv24661 Davidia involucrata
Dinv34644 Davidia involucrata
Duzib128G1552 Durio zibethinus
Duzib133G0365 Durio zibethinus
Duzib138G0430 Durio zibethinus
Duzib151G0164 Durio zibethinus
Duzib177G0707 Durio zibethinus
ECA232G1801 Erigeron canadensis
ECA233G6111 Erigeron canadensis
EL10Ac4g09037 Beta vulgaris
Eucgr.B02150 Eucalyptus grandis
Eucgr.H04226 Eucalyptus grandis
FAN02G0353 Fragaria x ananassa
FAN05G3476 Fragaria x ananassa
FAN05G5551 Fragaria x ananassa
FAN09G0713 Fragaria x ananassa
FAN09G1791 Fragaria x ananassa
FAN14G0063 Fragaria x ananassa
FAN14G1955 Fragaria x ananassa
FAN14G2413 Fragaria x ananassa
FAN14G4147 Fragaria x ananassa
FAN15G1268 Fragaria x ananassa
FAN20G0484 Fragaria x ananassa
FAN24G2918 Fragaria x ananassa
FAN27G0207 Fragaria x ananassa
FvH4_2g21130 Fragaria vesca
FvH4_4g07951 Fragaria vesca
FvH4_6g01930 Fragaria vesca
Glyma.03G251300 Glycine max
Glyma.10G166500 Glycine max
Glyma.10G181800 Glycine max
Glyma.19G248600 Glycine max
Glyma.20G208500 Glycine max
Glyma.20G222700 Glycine max
Gohir.A07G150200 Gossypium hirsutum
Gohir.A07G214100 Gossypium hirsutum
Gohir.A08G217600 Gossypium hirsutum
Gohir.A10G110600 Gossypium hirsutum
Gohir.A11G247000 Gossypium hirsutum
Gohir.A13G167200 Gossypium hirsutum
Gohir.D07G156500 Gossypium hirsutum
Gohir.D07G220600 Gossypium hirsutum
Gohir.D08G234600 Gossypium hirsutum
Gohir.D09G230400 Gossypium hirsutum
Gohir.D10G156200 Gossypium hirsutum
Gohir.D11G257200 Gossypium hirsutum
Gohir.D13G172700 Gossypium hirsutum
Gorai.001G179600 Gossypium raimondii
Gorai.001G254900 Gossypium raimondii
Gorai.004G249400 Gossypium raimondii
Gorai.006G253100 Gossypium raimondii
Gorai.007G275600 Gossypium raimondii
Gorai.011G175300 Gossypium raimondii
Gorai.013G187900 Gossypium raimondii
GSVIVG01023499001 Vitis vinifera
GSVIVG01028366001 Vitis vinifera
HanXRQChr05g0146691 Helianthus annuus
HanXRQChr07g0194801 Helianthus annuus
HanXRQChr07g0204471 Helianthus annuus
HanXRQChr08g0216921 Helianthus annuus
HanXRQChr11g0322031 Helianthus annuus
HanXRQChr17g0547291 Helianthus annuus
HanXRQChr17g0569301 Helianthus annuus
Haze_04420 Corylus avellana
Haze_24657 Corylus avellana
Hma1.2p1_1007F.1_g247090 Hydrangea macrophylla
Hma1.2p1_2196F.1_g316880 Hydrangea macrophylla
HPP92_002498 Vanilla planifolia
HPP92_002513 Vanilla planifolia
HPP92_002515 Vanilla planifolia
HPP92_002536 Vanilla planifolia
HPP92_012854 Vanilla planifolia
Hund06910 Selenicereus undatus
Hund22158 Selenicereus undatus
Lalb_Chr02g0149131 Lupinus albus
Lalb_Chr06g0168301 Lupinus albus
Lalb_Chr06g0169091 Lupinus albus
Lalb_Chr21g0311201 Lupinus albus
Lj1g0006540 Lotus japonicus
Lj2A1147T79 Lonicera japonica
Lj2C44G8 Lonicera japonica
Lj2g0018760 Lotus japonicus
Lj3g0003908 Lotus japonicus
Lj5g0000314 Lotus japonicus
Lj5g0001370 Lotus japonicus
Lj5g0021370 Lotus japonicus
Lj6g0020320 Lotus japonicus
Lsat_1_v5_gn_0_621 Lactuca sativa
Lsat_1_v5_gn_2_108341 Lactuca sativa
Lsat_1_v5_gn_8_24801 Lactuca sativa
Manes.03G163200 Manihot esculenta
Manes.08G139700 Manihot esculenta
Manes.09G147700 Manihot esculenta
Manes.13G036200 Manihot esculenta
Mapoly0032s0100 Marchantia polymorpha
MBI10_g13804_MAGBIO Magnolia biondii
MBI15_g06461_MAGBIO Magnolia biondii
MBI16_g17115_MAGBIO Magnolia biondii
MCO11G163 Micromonas commoda
MCO14G347 Micromonas commoda
MD04G1230600 Malus domestica
MD05G1194000 Malus domestica
MD10G1180700 Malus domestica
MD12G1248200 Malus domestica
MD12G1249000 Malus domestica
Medtr1g075800 Medicago truncatula
Medtr1g080030 Medicago truncatula
Medtr7g116150 Medicago truncatula
MELO3C008705.2 Cucumis melo
MELO3C023006.2 Cucumis melo
Migut.F00799 Erythranthe guttata
Migut.F01541 Erythranthe guttata
MSTRG.8226 Avicennia marina
Nitab4.5_0000914g0020 Nicotiana tabacum
Nitab4.5_0003780g0110 Nicotiana tabacum
Nitab4.5_0003965g0080 Nicotiana tabacum
Nitab4.5_0006737g0090 Nicotiana tabacum
Nn1g00480 Nelumbo nucifera
Nn1g00483 Nelumbo nucifera
Nn1g02837 Nelumbo nucifera
Oeu009476.1 Olea europaea
Oeu014527.1 Olea europaea
Oeu025613.1 Olea europaea
Oeu037761.1 Olea europaea
Oeu043746.1 Olea europaea
Oeu063791.1 Olea europaea
Os02g0191700 Oryza sativa ssp. japonica
Os10g0476600 Oryza sativa ssp. japonica
Peaxi162Scf00015g02918 Petunia axillaris
Peaxi162Scf00528g00220 Petunia axillaris
PGR142G0417 Punica granatum
PGR142G1277 Punica granatum
Phvul.006G105800 Phaseolus vulgaris
Phvul.008G140301 Phaseolus vulgaris
Phvul.008G151818 Phaseolus vulgaris
Potri.002G035800 Populus trichocarpa
Potri.005G227100 Populus trichocarpa
Potri.013G047300 Populus trichocarpa
Potri.019G019500 Populus trichocarpa
Pp3c10_7960 Physcomitrium patens
Pp3c14_22530 Physcomitrium patens
Pp3c17_21370 Physcomitrium patens
Pp3c1_38240 Physcomitrium patens
Pp3c21_1300 Physcomitrium patens
Pp3c2_3780 Physcomitrium patens
PRCOL_00006581 Prasinoderma coloniale
Prupe.6G350400 Prunus persica
Prupe.8G220600 Prunus persica
Psat0s3833g0040 Pisum sativum
Psat6g117000 Pisum sativum
Psat6g143400 Pisum sativum
Psat7g005040 Pisum sativum
PSO210G4973 Papaver somniferum
PSO210G6265 Papaver somniferum
PSO832G1191 Papaver somniferum
QL03p029909 Quercus lobata
QL03p030269 Quercus lobata
QL09p039887 Quercus lobata
RcHm_v2.0_Chr3g0449671 Rosa chinensis
RcHm_v2.0_Chr3g0449721 Rosa chinensis
RcHm_v2.0_Chr6g0287621 Rosa chinensis
Rhsim01G0262100 Rhododendron simsii
Rhsim05G0172200 Rhododendron simsii
Rhsim09G0136800 Rhododendron simsii
Sabra02G0029000 Salix brachista
Sabra05G0175300 Salix brachista
Sabra13G0043300 Salix brachista
SalBow3G0824 Salvia bowleyana
Sc06g0003160 Simmondsia chinensis
Sc09g0004200 Simmondsia chinensis
Sc20g0000610 Simmondsia chinensis
Sed0000807 Sechium edule
Sed0017836 Sechium edule
SEGI_15330 Sequoiadendron giganteum
SEGI_17574 Sequoiadendron giganteum
SEGI_27852 Sequoiadendron giganteum
SGA_v2.0_scaffold174G39250 Striga asiatica
SGA_v2.0_scaffold388G50529 Striga asiatica
SMO347G0315 Selaginella moellendorffii
Solyc04g010070.4 Solanum lycopersicum
Solyc05g054980.3 Solanum lycopersicum
Sopen04g005210 Solanum pennellii
Sopen05g033440 Solanum pennellii
Sp2g08920 Schrenkiella parvula
Sp2g20015 Schrenkiella parvula
Sp2g20020 Schrenkiella parvula
SpUn0001_0760 Schrenkiella parvula
TAR362G1098 Trochodendron aralioides
TAR365G0964 Trochodendron aralioides
TAR633G0352 Trochodendron aralioides
TAR636G0357 Trochodendron aralioides
THA.LOC104801146 Tarenaya hassleriana
THA.LOC104801728 Tarenaya hassleriana
THA.LOC104802847 Tarenaya hassleriana
THA.LOC104805784 Tarenaya hassleriana
THA.LOC104821241 Tarenaya hassleriana
Thecc.01G254800 Theobroma cacao
Thecc.04G256700 Theobroma cacao
Thecc.05G270500 Theobroma cacao
Thhalv10003178m.g Eutrema salsugineum
Thhalv10003957m.g Eutrema salsugineum
Thhalv10003963m.g Eutrema salsugineum
Thhalv10023407m.g Eutrema salsugineum
TPR.G10080 Trifolium pratense
TPR.G22329 Trifolium pratense
TPR.G23245 Trifolium pratense
TPR.G6957 Trifolium pratense
TWI09G1100 Tripterygium wilfordii
TWI36G1464 Tripterygium wilfordii
TWI56G0911 Tripterygium wilfordii
TWI73G0157 Tripterygium wilfordii
unitig_32.g10680 Utricularia gibba
unitig_88.g27759 Utricularia gibba
vmacro10368 Vaccinium macrocarpon
vmacro19988 Vaccinium macrocarpon
VMungo0540G1864 Vigna mungo
VMungo0720G0110 Vigna mungo
VMungo0720G0283 Vigna mungo
VMungo0720G2921 Vigna mungo
Zm00001eb045890 Zea mays
Zm00001eb206300 Zea mays
Zm00001eb221860 Zea mays
Zm00001eb235060 Zea mays

User provided reference genes

Program Settings