Gene: AT5G28900

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G28900
  • Transcript Identifier AT5G28900.1
  • Gene Type Coding gene
  • Location Chr5 : 10925852-10929892 : positive

Gene Family Information

  • ID HOM05D001871
  • #Genes/#Species 351/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G28900.1
  • uniprot Q8VZQ4

Descriptions

  • Description Calcium-binding EF-hand family protein
  • Computational description Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G28850.2); Has 645 Blast hits to 644 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006470
IBA
Gene Ontologyprotein dephosphorylation1
GO:0050790
IEA
GOA Databaseregulation of catalytic activity

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005509
IEA
Gene Ontologycalcium ion binding
GO:0005509
IEA
InterProcalcium ion binding
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0019888
IBA
Gene Ontologyprotein phosphatase regulator activity1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
HDA
ISM
Gene Ontologynucleus3
GO:0005737
IDA
IEA
GOA Databasecytoplasm
GO:0005737
HDA
Gene Ontologycytoplasm3
GO:0005829
RCA
Gene Ontologycytosol4
GO:0000159
IBA
Gene Ontologyprotein phosphatase type 2A complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002048 EF-hand domain
IPR011992 EF-hand domain pair
IPR041534 PP2A regulatory subunit B'', EF-hand domain
Mapman id Description
18.4.25.1.2.4 Protein modification.phosphorylation.protein serine/threonine phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A-class phosphatase complexes.regulatory component B2