Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p42360 Brassica napus
A06p19920 Brassica napus
A07p16680 Brassica napus
A09p09450 Brassica napus
Aa31LG11G1130 Aethionema arabicum
Aa31LG1G15800 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2504 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.705 Anthoceros agrestis
Actinidia03811 Actinidia chinensis
Actinidia04906 Actinidia chinensis
Actinidia12021 Actinidia chinensis
Actinidia16461 Actinidia chinensis
Actinidia19043 Actinidia chinensis
Actinidia36465 Actinidia chinensis
Ah.02g113340 Amaranthus hybridus
Ah.02g125170 Amaranthus hybridus
Ah.05g167260 Amaranthus hybridus
AL5G26970 Arabidopsis lyrata
AL8G39390 Arabidopsis lyrata
AL8G44060 Arabidopsis lyrata
Aqoxy3G03342 Aquilegia oxysepala
Aqoxy6G02883 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0EYZ3J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8SID5H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HI90ZC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HXE52Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JE30L8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T1VH32 Arachis hypogaea
AT3G47690 Arabidopsis thaliana
AT5G62500 Arabidopsis thaliana
AT5G67270 Arabidopsis thaliana
ATR0564G086 Amborella trichopoda
ATR0691G109 Amborella trichopoda
Atru.chr3.254 Acer truncatum
Atru.chr9.2272 Acer truncatum
Atru.chr9.2278 Acer truncatum
AUR62003934 Chenopodium quinoa
AUR62008385 Chenopodium quinoa
AUR62012612 Chenopodium quinoa
AUR62013901 Chenopodium quinoa
AUR62021713 Chenopodium quinoa
AUR62038252 Chenopodium quinoa
AUR62043036 Chenopodium quinoa
BcaB01g00887 Brassica carinata
BcaB02g09653 Brassica carinata
BcaB02g09950 Brassica carinata
BcaB04g20068 Brassica carinata
BcaB07g29842 Brassica carinata
BcaC01g01783 Brassica carinata
BcaC01g02481 Brassica carinata
BcaC03g18155 Brassica carinata
BcaC03g18160 Brassica carinata
BcaC04g23206 Brassica carinata
BcaC06g33302 Brassica carinata
BcaC06g34810 Brassica carinata
BNapus_Darmor_BZH_scaffold_88p00040 Brassica napus
BolC2t12281H Brassica oleracea
BolC3t18688H Brassica oleracea
BolC3t19488H Brassica oleracea
BolC7t42961H Brassica oleracea
BolC9t54002H Brassica oleracea
BraA02t09166Z Brassica rapa
BraA06t25075Z Brassica rapa
BraA06t25872Z Brassica rapa
BraA07t29392Z Brassica rapa
BraA09t36594Z Brassica rapa
BraSC181t45800Z Brassica rapa
BraSC45t46225Z Brassica rapa
C02p62240 Brassica napus
C03p64340 Brassica napus
C03p71910 Brassica napus
C07p24400 Brassica napus
C09p11130 Brassica napus
CAN.G370.12 Capsicum annuum
CAN.G407.113 Capsicum annuum
CANSAT25G1046 Cannabis sativa
CANSAT25G1347 Cannabis sativa
CANSAT80G1534 Cannabis sativa
CARHR156360 Cardamine hirsuta
CARHR276290 Cardamine hirsuta
CARHR280350 Cardamine hirsuta
Carub.0005s1382 Capsella rubella
Carub.0008s2316 Capsella rubella
Carub.0008s2723 Capsella rubella
Ca_13687_v3 Cicer arietinum L.
Ca_21831_v3 Cicer arietinum L.
Ca_24739_v3 Cicer arietinum L.
CBR_g12380 Chara braunii
Cc04_g16970 Coffea canephora
Cc07_g06430 Coffea canephora
CDE02G2416 Ceratophyllum demersum
CDE04G1679 Ceratophyllum demersum
CDE06G0362 Ceratophyllum demersum
CDE09G0433 Ceratophyllum demersum
Cfa004059 Carpinus fangiana
Cfa018962 Carpinus fangiana
Cfa025839 Carpinus fangiana
Ciclev10021657m.g Citrus clementina
Ciclev10026070m.g Citrus clementina
CiPaw.01G013200 Carya illinoinensis
CiPaw.02G006200 Carya illinoinensis
CiPaw.11G042500 Carya illinoinensis
CiPaw.12G014300 Carya illinoinensis
ClCG01G017070 Citrullus lanatus
ClCG02G008060 Citrullus lanatus
ClCG04G012400 Citrullus lanatus
COL.COLO4_11480 Corchorus olitorius
COL.COLO4_14743 Corchorus olitorius
COL.COLO4_24545 Corchorus olitorius
Cpa.g.sc17.228 Carica papaya
Cpa.g.sc6.101 Carica papaya
Cre17.g720500 Chlamydomonas reinhardtii
Cre17.g741200 Chlamydomonas reinhardtii
CsaV3_1G005310 Cucumis sativus L.
CsaV3_2G035590 Cucumis sativus L.
CsaV3_6G043540 Cucumis sativus L.
CSS0014463 Camellia sinensis var. sinensis
CSS0020479 Camellia sinensis var. sinensis
CSS0027109 Camellia sinensis var. sinensis
DCAR_025756 Daucus carota
DCAR_026043 Daucus carota
Dinv19943 Davidia involucrata
Dinv26863 Davidia involucrata
Dinv30031 Davidia involucrata
Dinv38690 Davidia involucrata
Duzib084G1391 Durio zibethinus
Duzib147G0725 Durio zibethinus
Duzib187G1106 Durio zibethinus
Duzib205G1814 Durio zibethinus
Duzib264G0265 Durio zibethinus
ECA232G4834 Erigeron canadensis
ECA238G3759 Erigeron canadensis
ECA246G1634 Erigeron canadensis
ECA246G2205 Erigeron canadensis
EL10Ac5g10979 Beta vulgaris
EL10Ac6g15692 Beta vulgaris
EL10As7g23790 Beta vulgaris
Eucgr.B00468 Eucalyptus grandis
Eucgr.I00763 Eucalyptus grandis
Eucgr.I00789 Eucalyptus grandis
Eucgr.I00817 Eucalyptus grandis
FAN04G0316 Fragaria x ananassa
FAN06G0613 Fragaria x ananassa
FAN08G0691 Fragaria x ananassa
FAN08G1043 Fragaria x ananassa
FAN09G1673 Fragaria x ananassa
FAN09G4534 Fragaria x ananassa
FAN12G0390 Fragaria x ananassa
FAN13G2267 Fragaria x ananassa
FAN15G0041 Fragaria x ananassa
FAN18G0514 Fragaria x ananassa
FAN19G2067 Fragaria x ananassa
FAN19G2154 Fragaria x ananassa
FAN23G0117 Fragaria x ananassa
FAN24G1703 Fragaria x ananassa
FAN25G1756 Fragaria x ananassa
FAN27G1992 Fragaria x ananassa
FAN27G2949 Fragaria x ananassa
FAN28G0130 Fragaria x ananassa
FAN28G1578 Fragaria x ananassa
FvH4_1g16740 Fragaria vesca
FvH4_5g15190 Fragaria vesca
Glyma.01G190000 Glycine max
Glyma.04G171300 Glycine max
Glyma.06G192600 Glycine max
Glyma.11G052200 Glycine max
Glyma.17G098700 Glycine max
Gohir.A02G155100 Gossypium hirsutum
Gohir.A03G065600 Gossypium hirsutum
Gohir.D03G025600 Gossypium hirsutum
Gohir.D03G092100 Gossypium hirsutum
Gorai.003G027200 Gossypium raimondii
Gorai.003G095700 Gossypium raimondii
GSVIVG01000223001 Vitis vinifera
GSVIVG01020018001 Vitis vinifera
HanXRQChr01g0030411 Helianthus annuus
HanXRQChr02g0044321 Helianthus annuus
HanXRQChr05g0158081 Helianthus annuus
HanXRQChr12g0381801 Helianthus annuus
Haze_07343 Corylus avellana
Haze_15353 Corylus avellana
Hma1.2p1_0017F.1_g011850 Hydrangea macrophylla
Hma1.2p1_0104F.1_g050060 Hydrangea macrophylla
Hma1.2p1_0239F.1_g100070 Hydrangea macrophylla
Hma1.2p1_0385F.1_g141645 Hydrangea macrophylla
Hma1.2p1_0735F.1_g210460 Hydrangea macrophylla
Hma1.2p1_1511F.1_g287890 Hydrangea macrophylla
HPP92_016802 Vanilla planifolia
HPP92_016822 Vanilla planifolia
HPP92_028518 Vanilla planifolia
HPP92_028529 Vanilla planifolia
Hund05328 Selenicereus undatus
Hund09359 Selenicereus undatus
Hund13913 Selenicereus undatus
Lalb_Chr05g0213441 Lupinus albus
Lalb_Chr05g0226321 Lupinus albus
Lalb_Chr07g0177961 Lupinus albus
Lalb_Chr09g0323381 Lupinus albus
Lalb_Chr11g0071621 Lupinus albus
Lalb_Chr12g0196821 Lupinus albus
Lalb_Chr16g0378721 Lupinus albus
Lalb_Chr23g0273841 Lupinus albus
Lj1g0024887 Lotus japonicus
Lj1g0026067 Lotus japonicus
Lj2g0017922 Lotus japonicus
Lj3g0012881 Lotus japonicus
Lj4g0026432 Lotus japonicus
Lj5A112T68 Lonicera japonica
Lj5g0025175 Lotus japonicus
Lj7C76G10 Lonicera japonica
Lj9A462T70 Lonicera japonica
LjContig00408g0024042 Lotus japonicus
Lsat_1_v5_gn_2_85580 Lactuca sativa
Lsat_1_v5_gn_3_88441 Lactuca sativa
Lsat_1_v5_gn_3_9881 Lactuca sativa
Lsat_1_v5_gn_5_19360 Lactuca sativa
Manes.06G094300 Manihot esculenta
Manes.12G108200 Manihot esculenta
Manes.13G118600 Manihot esculenta
Manes.14G076900 Manihot esculenta
Mapoly0007s0134 Marchantia polymorpha
Mapoly0073s0021 Marchantia polymorpha
MBI02_g14488_MAGBIO Magnolia biondii
MBI05_g33758_MAGBIO Magnolia biondii
MBI05_g35467_MAGBIO Magnolia biondii
MBI16_g34671_MAGBIO Magnolia biondii
MCO03G563 Micromonas commoda
MCO15G088 Micromonas commoda
MD00G1186200 Malus domestica
MD02G1178500 Malus domestica
MD06G1191400 Malus domestica
MD14G1197800 Malus domestica
MD15G1288400 Malus domestica
MD16G1114300 Malus domestica
Medtr0036s0210 Medicago truncatula
Medtr2072s0010 Medicago truncatula
Medtr4g108330 Medicago truncatula
Medtr5g016520 Medicago truncatula
MELO3C001970.2 Cucumis melo
MELO3C007584.2 Cucumis melo
MELO3C024792.2 Cucumis melo
Migut.D01836 Erythranthe guttata
Migut.H00396 Erythranthe guttata
Migut.I00163 Erythranthe guttata
MSTRG.23031 Avicennia marina
MSTRG.23716 Avicennia marina
MSTRG.2851 Avicennia marina
Nitab4.5_0001039g0080 Nicotiana tabacum
Nitab4.5_0001373g0050 Nicotiana tabacum
Nitab4.5_0002257g0080 Nicotiana tabacum
Nitab4.5_0006574g0040 Nicotiana tabacum
Nn1g04708 Nelumbo nucifera
Nn4g23112 Nelumbo nucifera
Oeu006499.1 Olea europaea
Oeu037162.1 Olea europaea
Oeu060801.1 Olea europaea
Os04g0642100 Oryza sativa ssp. japonica
Os10g0498900 Oryza sativa ssp. japonica
Peaxi162Scf00274g00810 Petunia axillaris
Peaxi162Scf00549g00428 Petunia axillaris
Peaxi162Scf00787g00026 Petunia axillaris
PGR083G1666 Punica granatum
PGR102G2575 Punica granatum
PGSC0003DMG400000627 Solanum tuberosum
PGSC0003DMG400024955 Solanum tuberosum
Phvul.002G015300 Phaseolus vulgaris
Phvul.009G188500 Phaseolus vulgaris
Potri.005G142200 Populus trichocarpa
Potri.007G048700 Populus trichocarpa
Potri.012G069400 Populus trichocarpa
Potri.015G062900 Populus trichocarpa
Pp3c20_6180 Physcomitrium patens
Pp3c20_6890 Physcomitrium patens
Pp3c23_19790 Physcomitrium patens
Pp3c23_19930 Physcomitrium patens
Pp3c23_6430 Physcomitrium patens
PRCOL_00006874 Prasinoderma coloniale
Prupe.5G189900 Prunus persica
Prupe.6G229300 Prunus persica
Psat2g168240 Pisum sativum
Psat4g052120 Pisum sativum
Psat5g187200 Pisum sativum
Psat7g159920 Pisum sativum
PSO017G4355 Papaver somniferum
PSO170G5431 Papaver somniferum
PSO210G6122 Papaver somniferum
PSO478G3851 Papaver somniferum
PSO541G3569 Papaver somniferum
PSO675G6853 Papaver somniferum
QL10p016457 Quercus lobata
RcHm_v2.0_Chr2g0106641 Rosa chinensis
RcHm_v2.0_Chr6g0278061 Rosa chinensis
RcHm_v2.0_Chr7g0180971 Rosa chinensis
Rhsim08G0097700 Rhododendron simsii
Rhsim08G0157200 Rhododendron simsii
Rhsim10G0112900 Rhododendron simsii
Sabra02G0125000 Salix brachista
Sabra05G0113400 Salix brachista
Sabra07G0043400 Salix brachista
Sabra15G0088200 Salix brachista
Sabra16G0134900 Salix brachista
SalBow7G3380 Salvia bowleyana
Sc04g0002540 Simmondsia chinensis
Sc15g0005870 Simmondsia chinensis
Sed0001398 Sechium edule
Sed0010357 Sechium edule
Sed0011523 Sechium edule
Sed0025877 Sechium edule
SEGI_01676 Sequoiadendron giganteum
SEGI_02951 Sequoiadendron giganteum
SEGI_20489 Sequoiadendron giganteum
SEGI_29324 Sequoiadendron giganteum
SEGI_32529 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31896 Striga asiatica
SGA_v2.0_scaffold143G35790 Striga asiatica
SGA_v2.0_scaffold56G20026 Striga asiatica
SMO143G0221 Selaginella moellendorffii
SMO304G0069 Selaginella moellendorffii
SMO356G0257 Selaginella moellendorffii
Solyc02g092950.3 Solanum lycopersicum
Solyc03g116370.3 Solanum lycopersicum
Sopen02g037510 Solanum pennellii
Sopen03g035300 Solanum pennellii
Sp2g25680 Schrenkiella parvula
Sp2g29390 Schrenkiella parvula
Sp5g14240 Schrenkiella parvula
TAR374G1161 Trochodendron aralioides
TAR376G0852 Trochodendron aralioides
TAR622G0789 Trochodendron aralioides
TAR628G1497 Trochodendron aralioides
THA.LOC104819439 Tarenaya hassleriana
THA.LOC104819440 Tarenaya hassleriana
THA.LOC104821242 Tarenaya hassleriana
THA.LOC104821427 Tarenaya hassleriana
THA.LOC104827427 Tarenaya hassleriana
Thecc.01G063100 Theobroma cacao
Thecc.03G083900 Theobroma cacao
Thhalv10004586m.g Eutrema salsugineum
Thhalv10004754m.g Eutrema salsugineum
Thhalv10010609m.g Eutrema salsugineum
TPR.G11958 Trifolium pratense
TPR.G26873 Trifolium pratense
TPR.G34738 Trifolium pratense
TWI60G1395 Tripterygium wilfordii
TWI73G0726 Tripterygium wilfordii
TWI81G0695 Tripterygium wilfordii
unitig_749.g13445 Utricularia gibba
vmacro05256 Vaccinium macrocarpon
vmacro17557 Vaccinium macrocarpon
vmacro17975 Vaccinium macrocarpon
VMungo1215G0474 Vigna mungo
VMungo1309G2018 Vigna mungo
Zm00001eb044540 Zea mays
Zm00001eb068860 Zea mays

User provided reference genes

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