Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p34790 Brassica napus
A03p43840 Brassica napus
A06p41740 Brassica napus
A07p11310 Brassica napus
A09p37780 Brassica napus
Aa31LG2G5750 Aethionema arabicum
Aa31LG8G11820 Aethionema arabicum
Actinidia09501 Actinidia chinensis
Actinidia19560 Actinidia chinensis
Actinidia23745 Actinidia chinensis
Actinidia37730 Actinidia chinensis
Ah.02g128950 Amaranthus hybridus
AL1G41860 Arabidopsis lyrata
AL3G40270 Arabidopsis lyrata
AL5G15680 Arabidopsis lyrata
Aqoxy1G02370 Aquilegia oxysepala
Aqoxy1G03473 Aquilegia oxysepala
Aqoxy1G03475 Aquilegia oxysepala
Aqoxy3G01824 Aquilegia oxysepala
Aqoxy3G04315 Aquilegia oxysepala
Aqoxy5G00059 Aquilegia oxysepala
Aqoxy5G03198 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4K8YXT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6PZ1IJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D9C186 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HB4W2S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PN7UB6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z6Z4XE Arachis hypogaea
AT1G28300 Arabidopsis thaliana
AT3G24650 Arabidopsis thaliana
AT3G26790 Arabidopsis thaliana
ATR0217G026 Amborella trichopoda
ATR0618G429 Amborella trichopoda
ATR0824G204 Amborella trichopoda
Atru.chr10.1847 Acer truncatum
Atru.chr5.1940 Acer truncatum
Atru.chr6.2635 Acer truncatum
AUR62008894 Chenopodium quinoa
AUR62031814 Chenopodium quinoa
AUR62037841 Chenopodium quinoa
AUR62041079 Chenopodium quinoa
BcaB03g13936 Brassica carinata
BcaB03g14571 Brassica carinata
BcaB07g30209 Brassica carinata
BcaB07g32441 Brassica carinata
BcaC01g03263 Brassica carinata
BcaC03g17389 Brassica carinata
BcaC05g26834 Brassica carinata
BcaC06g31043 Brassica carinata
BcaC06g33890 Brassica carinata
BcaC06g35353 Brassica carinata
BolC2t11407H Brassica oleracea
BolC3t17707H Brassica oleracea
BolC5t31429H Brassica oleracea
BolC7t42209H Brassica oleracea
BolC7t44100H Brassica oleracea
BraA02t08485Z Brassica rapa
BraA03t13518Z Brassica rapa
BraA06t27094Z Brassica rapa
BraA09t39289Z Brassica rapa
C02p53350 Brassica napus
C03p54220 Brassica napus
C05p27150 Brassica napus
C07p17070 Brassica napus
C07p35840 Brassica napus
CAN.G1143.36 Capsicum annuum
CAN.G716.5 Capsicum annuum
CAN.G771.55 Capsicum annuum
CAN.G771.56 Capsicum annuum
CANSAT01G2411 Cannabis sativa
CANSAT35G0236 Cannabis sativa
CANSAT64G2128 Cannabis sativa
CARHR027790 Cardamine hirsuta
CARHR100970 Cardamine hirsuta
CARHR147880 Cardamine hirsuta
Carub.0001s2674 Capsella rubella
Carub.0003s2505 Capsella rubella
Carub.0005s0485 Capsella rubella
Ca_08124_v3 Cicer arietinum L.
Ca_18560_v3 Cicer arietinum L.
Ca_22686_v3 Cicer arietinum L.
Cc01_g17380 Coffea canephora
Cc07_g01190 Coffea canephora
CDE01G0704 Ceratophyllum demersum
CDE02G1668 Ceratophyllum demersum
CDE08G0477 Ceratophyllum demersum
CDE09G1165 Ceratophyllum demersum
CDE12G0269 Ceratophyllum demersum
Cfa000502 Carpinus fangiana
Cfa002536 Carpinus fangiana
Cfa007177 Carpinus fangiana
Cfa019637 Carpinus fangiana
Ciclev10016085m.g Citrus clementina
Ciclev10018117m.g Citrus clementina
Ciclev10019039m.g Citrus clementina
CiPaw.03G152600 Carya illinoinensis
CiPaw.04G002000 Carya illinoinensis
CiPaw.04G107600 Carya illinoinensis
CiPaw.09G061600 Carya illinoinensis
ClCG01G008250 Citrullus lanatus
ClCG01G023070 Citrullus lanatus
ClCG09G009230 Citrullus lanatus
COL.COLO4_13343 Corchorus olitorius
COL.COLO4_36331 Corchorus olitorius
COL.COLO4_36332 Corchorus olitorius
Cpa.g.sc70.84 Carica papaya
Cpa.g.sc8.187 Carica papaya
Cre04.g228600 Chlamydomonas reinhardtii
CsaV3_5G020140 Cucumis sativus L.
CsaV3_7G025720 Cucumis sativus L.
CSS0002310 Camellia sinensis var. sinensis
CSS0007765 Camellia sinensis var. sinensis
CSS0042217 Camellia sinensis var. sinensis
DCAR_000539 Daucus carota
DCAR_004706 Daucus carota
DCAR_015138 Daucus carota
Dinv19231 Davidia involucrata
Dinv19232 Davidia involucrata
Dinv33292 Davidia involucrata
Dinv40578 Davidia involucrata
Duzib133G0078 Durio zibethinus
Duzib138G0071 Durio zibethinus
Duzib147G0793 Durio zibethinus
Duzib160G0777 Durio zibethinus
Duzib187G1847 Durio zibethinus
Duzib235G1400 Durio zibethinus
Duzib264G0439 Durio zibethinus
ECA238G4482 Erigeron canadensis
ECA247G2651 Erigeron canadensis
EL10Ac6g13383 Beta vulgaris
EL10Ac7g17813 Beta vulgaris
Eucgr.H00815 Eucalyptus grandis
FAN02G2219 Fragaria x ananassa
FAN05G5113 Fragaria x ananassa
FAN09G0959 Fragaria x ananassa
FAN11G2643 Fragaria x ananassa
FAN14G3401 Fragaria x ananassa
FAN15G2279 Fragaria x ananassa
FAN17G0741 Fragaria x ananassa
FAN21G0735 Fragaria x ananassa
FAN24G0767 Fragaria x ananassa
FAN25G2415 Fragaria x ananassa
FAN27G2966 Fragaria x ananassa
FvH4_2g19630 Fragaria vesca
FvH4_3g08960 Fragaria vesca
FvH4_4g22891 Fragaria vesca
FvH4_5g20960 Fragaria vesca
FvH4_6g54170 Fragaria vesca
Glyma.08G357600 Glycine max
Glyma.16G050300 Glycine max
Glyma.18G176100 Glycine max
Glyma.19G100900 Glycine max
Glyma.20G035700 Glycine max
Glyma.20G035800 Glycine max
Gohir.A05G160700 Gossypium hirsutum
Gohir.A07G154900 Gossypium hirsutum
Gohir.A07G230400 Gossypium hirsutum
Gohir.A09G073000 Gossypium hirsutum
Gohir.D05G163400 Gossypium hirsutum
Gohir.D07G161100 Gossypium hirsutum
Gohir.D07G237600 Gossypium hirsutum
Gohir.D09G072600 Gossypium hirsutum
Gorai.001G184300 Gossypium raimondii
Gorai.001G273500 Gossypium raimondii
Gorai.006G087600 Gossypium raimondii
Gorai.009G168500 Gossypium raimondii
GSVIVG01028540001 Vitis vinifera
GSVIVG01033007001 Vitis vinifera
GSVIVG01034419001 Vitis vinifera
HanXRQChr10g0280021 Helianthus annuus
HanXRQChr15g0468411 Helianthus annuus
HanXRQChr15g0482071 Helianthus annuus
Haze_06412 Corylus avellana
Haze_13272 Corylus avellana
Haze_14933 Corylus avellana
Haze_18885 Corylus avellana
Haze_24765 Corylus avellana
Hma1.2p1_0208F.1_g088260 Hydrangea macrophylla
Hma1.2p1_0421F.1_g150010 Hydrangea macrophylla
HPP92_008948 Vanilla planifolia
Lalb_Chr01g0022481 Lupinus albus
Lalb_Chr03g0041991 Lupinus albus
Lalb_Chr09g0327701 Lupinus albus
Lalb_Chr14g0363941 Lupinus albus
Lalb_Chr14g0363951 Lupinus albus
Lalb_Chr22g0360001 Lupinus albus
Lj1A1203T31 Lonicera japonica
Lj1C82T1 Lonicera japonica
Lj1g0008452 Lotus japonicus
Lj1g0020945 Lotus japonicus
Lj2A1135T40 Lonicera japonica
Lj3g0021398 Lotus japonicus
Lsat_1_v5_gn_9_12961 Lactuca sativa
Manes.04G091801 Manihot esculenta
Manes.11G078400 Manihot esculenta
Manes.12G043500 Manihot esculenta
Manes.13G043500 Manihot esculenta
Manes.17G047000 Manihot esculenta
Mapoly0086s0035 Marchantia polymorpha
Mapoly0474s0001 Marchantia polymorpha
MBI11_g04277_MAGBIO Magnolia biondii
MD05G1181100 Malus domestica
MD09G1004700 Malus domestica
MD10G1169900 Malus domestica
MD17G1008700 Malus domestica
Medtr4g088605 Medicago truncatula
Medtr7g059330 Medicago truncatula
Medtr7g083700 Medicago truncatula
Medtr8g470990 Medicago truncatula
MELO3C021001.2 Cucumis melo
MELO3C027255.2 Cucumis melo
MELO3C032905.2 Cucumis melo
Migut.D00511 Erythranthe guttata
Migut.F00019 Erythranthe guttata
MSTRG.21438 Avicennia marina
MSTRG.3047 Avicennia marina
Nitab4.5_0000519g0250 Nicotiana tabacum
Nitab4.5_0000813g0020 Nicotiana tabacum
Nitab4.5_0001657g0040 Nicotiana tabacum
Nitab4.5_0002085g0110 Nicotiana tabacum
Nitab4.5_0002172g0100 Nicotiana tabacum
Nitab4.5_0006465g0030 Nicotiana tabacum
Nn1g03112 Nelumbo nucifera
Nn1g04150 Nelumbo nucifera
Nn1g06476 Nelumbo nucifera
Nn1g06477 Nelumbo nucifera
Nn4g22184 Nelumbo nucifera
Nn4g25139 Nelumbo nucifera
Nn8g40785 Nelumbo nucifera
Oeu015454.1 Olea europaea
Oeu015455.1 Olea europaea
Oeu052113.2 Olea europaea
Os01g0911700 Oryza sativa ssp. japonica
Peaxi162Scf00052g00147 Petunia axillaris
Peaxi162Scf00420g00827 Petunia axillaris
PGR042G0174 Punica granatum
PGR083G0419 Punica granatum
PGR083G2367 Punica granatum
PGSC0003DMG400020088 Solanum tuberosum
PGSC0003DMG400020155 Solanum tuberosum
Phvul.001G086800 Phaseolus vulgaris
Phvul.008G122100 Phaseolus vulgaris
Potri.001G322700 Populus trichocarpa
Potri.002G252000 Populus trichocarpa
Potri.004G045800 Populus trichocarpa
Potri.011G054000 Populus trichocarpa
Potri.017G061200 Populus trichocarpa
Pp3c13_13320 Physcomitrium patens
Pp3c15_15020 Physcomitrium patens
Pp3c17_16470 Physcomitrium patens
Pp3c18_16640 Physcomitrium patens
Pp3c21_7130 Physcomitrium patens
Pp3c22_11290 Physcomitrium patens
Pp3c2_3370 Physcomitrium patens
Pp3c4_7320 Physcomitrium patens
Pp3c4_7328 Physcomitrium patens
Pp3c9_20090 Physcomitrium patens
Prupe.3G312100 Prunus persica
Prupe.4G049500 Prunus persica
Prupe.8G207700 Prunus persica
Psat3g094680 Pisum sativum
Psat3g142040 Pisum sativum
Psat7g115320 Pisum sativum
PSO017G4916 Papaver somniferum
PSO170G2943 Papaver somniferum
PSO304G0014 Papaver somniferum
PSO384G2455 Papaver somniferum
PSO478G4101 Papaver somniferum
PSO541G1212 Papaver somniferum
PSO675G5179 Papaver somniferum
PSO764G0056 Papaver somniferum
QL02p069954 Quercus lobata
QL04p095134 Quercus lobata
QL05p041354 Quercus lobata
QL09p044350 Quercus lobata
RcHm_v2.0_Chr2g0176341 Rosa chinensis
RcHm_v2.0_Chr5g0037101 Rosa chinensis
RcHm_v2.0_Chr6g0285371 Rosa chinensis
Rhsim01G0258000 Rhododendron simsii
Rhsim08G0040100 Rhododendron simsii
Sabra02G0191400 Salix brachista
Sabra11G0037600 Salix brachista
Sabra17G0054400 Salix brachista
SalBow4G0480 Salvia bowleyana
SalBow4G1361 Salvia bowleyana
SalBow4G1730 Salvia bowleyana
Sc03g0004860 Simmondsia chinensis
Sc17g0002510 Simmondsia chinensis
Sed0002352 Sechium edule
Sed0002874 Sechium edule
Sed0007968 Sechium edule
Sed0013379 Sechium edule
Sed0020804 Sechium edule
Sed0024400 Sechium edule
SEGI_02348 Sequoiadendron giganteum
SEGI_02998 Sequoiadendron giganteum
SEGI_08328 Sequoiadendron giganteum
SEGI_09543 Sequoiadendron giganteum
SEGI_15345 Sequoiadendron giganteum
SEGI_20202 Sequoiadendron giganteum
SEGI_25581 Sequoiadendron giganteum
SEGI_25896 Sequoiadendron giganteum
SEGI_26922 Sequoiadendron giganteum
SEGI_27783 Sequoiadendron giganteum
SEGI_29455 Sequoiadendron giganteum
SEGI_30047 Sequoiadendron giganteum
SEGI_30555 Sequoiadendron giganteum
SEGI_31156 Sequoiadendron giganteum
SEGI_34608 Sequoiadendron giganteum
SEGI_39234 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00705 Striga asiatica
SGA_v2.0_scaffold253G45151 Striga asiatica
SHI01706 Sapria himalayana
SHI11381 Sapria himalayana
SMO197G0047 Selaginella moellendorffii
SMO347G0003 Selaginella moellendorffii
Solyc06g083590.4 Solanum lycopersicum
Solyc06g083600.3 Solanum lycopersicum
Sopen06g034980 Solanum pennellii
Sopen06g034990 Solanum pennellii
Sp1g24520 Schrenkiella parvula
Sp2g15930 Schrenkiella parvula
Sp2g15940 Schrenkiella parvula
Sp3g22420 Schrenkiella parvula
TAR362G0407 Trochodendron aralioides
TAR371G1125 Trochodendron aralioides
TAR374G1251 Trochodendron aralioides
TAR624G0312 Trochodendron aralioides
TAR629G0231 Trochodendron aralioides
TAR629G2329 Trochodendron aralioides
TAR633G1393 Trochodendron aralioides
THA.LOC104805309 Tarenaya hassleriana
THA.LOC104814220 Tarenaya hassleriana
THA.LOC104825651 Tarenaya hassleriana
Thecc.01G230500 Theobroma cacao
Thecc.04G045200 Theobroma cacao
Thecc.06G184500 Theobroma cacao
Thhalv10003110m.g Eutrema salsugineum
Thhalv10005481m.g Eutrema salsugineum
Thhalv10009849m.g Eutrema salsugineum
TPR.G17458 Trifolium pratense
TPR.G17645 Trifolium pratense
TPR.G23267 Trifolium pratense
TWI14G0074 Tripterygium wilfordii
TWI34G0505 Tripterygium wilfordii
TWI38G1187 Tripterygium wilfordii
TWI60G0291 Tripterygium wilfordii
unitig_0.g174 Utricularia gibba
unitig_26.g9636 Utricularia gibba
unitig_60.g25727 Utricularia gibba
VMungo1383G1808 Vigna mungo
VMungo1383G2939 Vigna mungo
Zm00001eb066270 Zea mays
Zm00001eb143690 Zea mays
Zm00001eb198710 Zea mays
Zm00001eb361390 Zea mays

User provided reference genes

Program Settings