Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p11690 Brassica napus
A04p27070 Brassica napus
A09p35010 Brassica napus
A10p19010 Brassica napus
Aa31LG1G13710 Aethionema arabicum
Aa31LG2G15160 Aethionema arabicum
Aa31LG6G10710 Aethionema arabicum
Aa31LG6G2270 Aethionema arabicum
Aa31LG6G2290 Aethionema arabicum
Aa31LG9G16010 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.4081 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5806 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3030 Anthoceros agrestis
Actinidia04143 Actinidia chinensis
Actinidia04144 Actinidia chinensis
Actinidia07014 Actinidia chinensis
Actinidia17319 Actinidia chinensis
Actinidia38635 Actinidia chinensis
Ah.07g204380 Amaranthus hybridus
Ah.08g222760 Amaranthus hybridus
Ah.08g222770 Amaranthus hybridus
Ah.08g222780 Amaranthus hybridus
AL1G49250 Arabidopsis lyrata
AL6G32610 Arabidopsis lyrata
AL7G34320 Arabidopsis lyrata
Aqoxy2G01446 Aquilegia oxysepala
Aqoxy3G00793 Aquilegia oxysepala
Aqoxy5G00835 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.45GZWB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.876Z5Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IH7417 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TY5MIX Arachis hypogaea
AT1G31230 Arabidopsis thaliana
AT4G19710 Arabidopsis thaliana
AT5G21060 Arabidopsis thaliana
ATR0068G110 Amborella trichopoda
ATR0665G656 Amborella trichopoda
Atru.chr13.2521 Acer truncatum
Atru.chr13.2615 Acer truncatum
Atru.chr13.2616 Acer truncatum
Atru.chr3.2923 Acer truncatum
AUR62001609 Chenopodium quinoa
AUR62005967 Chenopodium quinoa
AUR62020171 Chenopodium quinoa
AUR62028102 Chenopodium quinoa
BcaB07g32785 Brassica carinata
BcaB08g36482 Brassica carinata
BcaC02g11995 Brassica carinata
BcaC04g19501 Brassica carinata
BcaC05g27153 Brassica carinata
BcaC09g51367 Brassica carinata
BcaC09g51370 Brassica carinata
BcaC09g51372 Brassica carinata
BcaNung01751 Brassica carinata
BolC1t01351H Brassica oleracea
BolC1t01354H Brassica oleracea
BolC5t31779H Brassica oleracea
BolC9t58365H Brassica oleracea
BraA01t01111Z Brassica rapa
BraA09t39032Z Brassica rapa
BraA10t43979Z Brassica rapa
C01p13830 Brassica napus
C01p13860 Brassica napus
C05p30420 Brassica napus
C09p55020 Brassica napus
CAN.G14.55 Capsicum annuum
CAN.G27.2 Capsicum annuum
CAN.G280.22 Capsicum annuum
CAN.G83.2 Capsicum annuum
CANSAT25G1500 Cannabis sativa
CARHR030710 Cardamine hirsuta
CARHR118950 Cardamine hirsuta
CARHR191810 Cardamine hirsuta
CARHR226530 Cardamine hirsuta
Carub.0001s2963 Capsella rubella
Carub.0006s1936 Capsella rubella
Carub.0007s2144 Capsella rubella
Ca_07229_v3 Cicer arietinum L.
Ca_08463_v3 Cicer arietinum L.
Ca_11252_v3 Cicer arietinum L.
Ca_16236_v3 Cicer arietinum L.
Ca_16425_v3 Cicer arietinum L.
Ca_18000_v3 Cicer arietinum L.
Ca_26141_v3 Cicer arietinum L.
CBR_g24080 Chara braunii
CBR_g26412 Chara braunii
Cc01_g07600 Coffea canephora
Cc10_g08630 Coffea canephora
CDE02G3059 Ceratophyllum demersum
CDE04G0141 Ceratophyllum demersum
Cfa008078 Carpinus fangiana
Cfa023949 Carpinus fangiana
Cfa026065 Carpinus fangiana
Ciclev10018756m.g Citrus clementina
Ciclev10023926m.g Citrus clementina
Ciclev10031821m.g Citrus clementina
Ciclev10033902m.g Citrus clementina
CiPaw.03G014400 Carya illinoinensis
CiPaw.04G009200 Carya illinoinensis
CiPaw.13G120200 Carya illinoinensis
ClCG03G014190 Citrullus lanatus
ClCG08G001130 Citrullus lanatus
COL.COLO4_05207 Corchorus olitorius
COL.COLO4_05233 Corchorus olitorius
COL.COLO4_18373 Corchorus olitorius
Cpa.g.sc103.70 Carica papaya
Cpa.g.sc21.85 Carica papaya
Cre02.g109550 Chlamydomonas reinhardtii
Cre18.g749447 Chlamydomonas reinhardtii
CsaV3_1G042050 Cucumis sativus L.
CsaV3_5G039900 Cucumis sativus L.
CSS0003534 Camellia sinensis var. sinensis
CSS0011157 Camellia sinensis var. sinensis
CSS0014449 Camellia sinensis var. sinensis
CSS0021753 Camellia sinensis var. sinensis
CSS0024545 Camellia sinensis var. sinensis
CSS0028925 Camellia sinensis var. sinensis
CSS0030952 Camellia sinensis var. sinensis
CSS0034171 Camellia sinensis var. sinensis
CSS0034856 Camellia sinensis var. sinensis
CSS0039369 Camellia sinensis var. sinensis
CSS0044883 Camellia sinensis var. sinensis
DCAR_002126 Daucus carota
DCAR_003713 Daucus carota
Dinv05236 Davidia involucrata
Dinv07668 Davidia involucrata
Dinv22110 Davidia involucrata
Duzib168G1187 Durio zibethinus
Duzib177G0714 Durio zibethinus
ECA232G1733 Erigeron canadensis
ECA240G4767 Erigeron canadensis
EL10Ac3g05151 Beta vulgaris
EL10Ac7g16223 Beta vulgaris
Eucgr.F02952 Eucalyptus grandis
Eucgr.J00623 Eucalyptus grandis
FAN11G0469 Fragaria x ananassa
FAN16G2170 Fragaria x ananassa
FAN20G2120 Fragaria x ananassa
FAN21G3701 Fragaria x ananassa
FAN24G2627 Fragaria x ananassa
FAN25G0391 Fragaria x ananassa
FAN25G3061 Fragaria x ananassa
FAN27G3012 Fragaria x ananassa
FvH4_2g00800 Fragaria vesca
FvH4_3g27120 Fragaria vesca
Glyma.05G151100 Glycine max
Glyma.08G107800 Glycine max
Glyma.13G048133 Glycine max
Glyma.18G002866 Glycine max
Glyma.18G002932 Glycine max
Glyma.20G053200 Glycine max
Gohir.A03G035300 Gossypium hirsutum
Gohir.A08G230100 Gossypium hirsutum
Gohir.D03G132900 Gossypium hirsutum
Gohir.D08G250500 Gossypium hirsutum
Gorai.003G140000 Gossypium raimondii
Gorai.004G267200 Gossypium raimondii
GSVIVG01036290001 Vitis vinifera
GSVIVG01037466001 Vitis vinifera
HanXRQChr02g0051121 Helianthus annuus
HanXRQChr02g0051361 Helianthus annuus
HanXRQChr03g0084001 Helianthus annuus
HanXRQChr08g0220251 Helianthus annuus
HanXRQChr09g0269231 Helianthus annuus
HanXRQChr10g0300731 Helianthus annuus
HanXRQChr13g0389141 Helianthus annuus
HanXRQChr14g0436371 Helianthus annuus
Haze_13957 Corylus avellana
Haze_23659 Corylus avellana
Hma1.2p1_0417F.1_g148930 Hydrangea macrophylla
HPP92_018006 Vanilla planifolia
HPP92_021925 Vanilla planifolia
HPP92_021926 Vanilla planifolia
HPP92_026681 Vanilla planifolia
Hund18828 Selenicereus undatus
Hund21050 Selenicereus undatus
Hund21072 Selenicereus undatus
Lalb_Chr02g0158501 Lupinus albus
Lalb_Chr12g0205681 Lupinus albus
Lalb_Chr13g0294741 Lupinus albus
Lj2A924G26 Lonicera japonica
Lj2C922G2 Lonicera japonica
Lj3g0022039 Lotus japonicus
Lj4g0024431 Lotus japonicus
Lj6g0010107 Lotus japonicus
Lj6g0025568 Lotus japonicus
Lj8A621G19 Lonicera japonica
Lsat_1_v5_gn_4_106380 Lactuca sativa
Lsat_1_v5_gn_4_107960 Lactuca sativa
Lsat_1_v5_gn_4_118220 Lactuca sativa
Lsat_1_v5_gn_4_118240 Lactuca sativa
Lsat_1_v5_gn_4_118581 Lactuca sativa
Lsat_1_v5_gn_6_29841 Lactuca sativa
Lsat_1_v5_gn_6_79520 Lactuca sativa
Manes.02G201600 Manihot esculenta
Manes.04G055488 Manihot esculenta
Manes.12G153700 Manihot esculenta
Manes.18G116401 Manihot esculenta
Mapoly0016s0043 Marchantia polymorpha
Mapoly0016s0044 Marchantia polymorpha
MBI01_g01228_MAGBIO Magnolia biondii
MBI04_g20663_MAGBIO Magnolia biondii
MBI04_g33686_MAGBIO Magnolia biondii
MBI19_g32309_MAGBIO Magnolia biondii
MBI19_g40249_MAGBIO Magnolia biondii
MCO04G115 Micromonas commoda
MCO10G303 Micromonas commoda
MD05G1003800 Malus domestica
MD05G1004700 Malus domestica
MD10G1004700 Malus domestica
MD11G1179300 Malus domestica
Medtr3g079330 Medicago truncatula
Medtr3g084500 Medicago truncatula
Medtr8g083210 Medicago truncatula
MELO3C022170.2 Cucumis melo
MELO3C029399.2 Cucumis melo
Migut.C01380 Erythranthe guttata
Migut.N02415 Erythranthe guttata
MSTRG.1600 Avicennia marina
MSTRG.17658 Avicennia marina
MSTRG.25497 Avicennia marina
Nitab4.5_0000213g0120 Nicotiana tabacum
Nitab4.5_0002567g0070 Nicotiana tabacum
Nitab4.5_0002654g0030 Nicotiana tabacum
Nitab4.5_0003723g0020 Nicotiana tabacum
Nitab4.5_0009952g0030 Nicotiana tabacum
Nitab4.5_0010319g0010 Nicotiana tabacum
Nn2g12417 Nelumbo nucifera
Nn7g37283 Nelumbo nucifera
Nn8g39938 Nelumbo nucifera
Oeu020543.1 Olea europaea
Oeu023196.1 Olea europaea
Oeu028109.1 Olea europaea
Oeu032072.1 Olea europaea
Os08g0342400 Oryza sativa ssp. japonica
Os09g0294000 Oryza sativa ssp. japonica
Os11g0128800 Oryza sativa ssp. japonica
Os12g0125400 Oryza sativa ssp. japonica
Peaxi162Scf00048g00049 Petunia axillaris
Peaxi162Scf00078g00071 Petunia axillaris
Peaxi162Scf00078g00616 Petunia axillaris
Peaxi162Scf00078g00736 Petunia axillaris
Peaxi162Scf00217g01216 Petunia axillaris
Peaxi162Scf00818g00531 Petunia axillaris
PGR042G3523 Punica granatum
PGR119G1182 Punica granatum
PGSC0003DMG400018575 Solanum tuberosum
PGSC0003DMG400018695 Solanum tuberosum
PGSC0003DMG400027401 Solanum tuberosum
PGSC0003DMG400033126 Solanum tuberosum
Phvul.001G265600 Phaseolus vulgaris
Phvul.011G012000 Phaseolus vulgaris
Phvul.L003537 Phaseolus vulgaris
Potri.004G196200 Populus trichocarpa
Potri.013G099500 Populus trichocarpa
Potri.019G071700 Populus trichocarpa
Pp3c16_8500 Physcomitrium patens
Pp3c25_5840 Physcomitrium patens
Pp3c25_5870 Physcomitrium patens
Pp3c5_15490 Physcomitrium patens
PRCOL_00002501 Prasinoderma coloniale
PRCOL_00004457 Prasinoderma coloniale
Prupe.5G007500 Prunus persica
Prupe.5G009800 Prunus persica
Prupe.8G007000 Prunus persica
Psat0s305g0080 Pisum sativum
Psat0s7653g0040 Pisum sativum
Psat5g099120 Pisum sativum
Psat5g109280 Pisum sativum
Psat7g075960 Pisum sativum
PSO017G5299 Papaver somniferum
PSO170G3583 Papaver somniferum
PSO170G5669 Papaver somniferum
PSO675G1710 Papaver somniferum
QL01p020357 Quercus lobata
QL09p001828 Quercus lobata
QL10p058201 Quercus lobata
QL11p001782 Quercus lobata
RcHm_v2.0_Chr5g0049661 Rosa chinensis
RcHm_v2.0_Chr6g0251231 Rosa chinensis
Rhsim01G0004600 Rhododendron simsii
Rhsim01G0175900 Rhododendron simsii
Rhsim03G0264300 Rhododendron simsii
Rhsim12G0143700 Rhododendron simsii
Rhsim13G0201100 Rhododendron simsii
Sabra04G0133000 Salix brachista
Sabra09G0123900 Salix brachista
Sabra13G0085300 Salix brachista
Sabra19G0083600 Salix brachista
SalBow1G7856 Salvia bowleyana
SalBow3G4352 Salvia bowleyana
SalBow6G6680 Salvia bowleyana
SalBow7G2902 Salvia bowleyana
Sc06g0006200 Simmondsia chinensis
Sc19g0000480 Simmondsia chinensis
Sed0001278 Sechium edule
Sed0003336 Sechium edule
Sed0008498 Sechium edule
SEGI_15548 Sequoiadendron giganteum
SEGI_20818 Sequoiadendron giganteum
SEGI_36113 Sequoiadendron giganteum
SEGI_40107 Sequoiadendron giganteum
SGA_v2.0_scaffold147G36298 Striga asiatica
SGA_v2.0_scaffold24G10648 Striga asiatica
SGA_v2.0_scaffold256G45636 Striga asiatica
SGA_v2.0_scaffold35G13989 Striga asiatica
SGA_v2.0_scaffold79G25520 Striga asiatica
SHI04312 Sapria himalayana
SHI07491 Sapria himalayana
SHI07493 Sapria himalayana
SHI07495 Sapria himalayana
SHI07496 Sapria himalayana
SMO112G0109 Selaginella moellendorffii
SMO358G0576 Selaginella moellendorffii
SMO364G0184 Selaginella moellendorffii
Solyc06g064550.3 Solanum lycopersicum
Solyc11g040380.2 Solanum lycopersicum
Solyc11g040390.2 Solanum lycopersicum
Solyc11g072010.3 Solanum lycopersicum
Sopen06g023030 Solanum pennellii
Sopen11g018410 Solanum pennellii
Sopen11g018430 Solanum pennellii
Sopen11g029110 Solanum pennellii
Sopen11g029670 Solanum pennellii
Sp1g27040 Schrenkiella parvula
Sp6g23480 Schrenkiella parvula
Sp7g18310 Schrenkiella parvula
TAR376G0331 Trochodendron aralioides
TAR623G0200 Trochodendron aralioides
THA.LOC104810965 Tarenaya hassleriana
THA.LOC104812709 Tarenaya hassleriana
THA.LOC104812911 Tarenaya hassleriana
THA.LOC104813352 Tarenaya hassleriana
Thecc.08G178600 Theobroma cacao
Thecc.09G336900 Theobroma cacao
Thhalv10006741m.g Eutrema salsugineum
Thhalv10013841m.g Eutrema salsugineum
Thhalv10024340m.g Eutrema salsugineum
TPR.G11916 Trifolium pratense
TPR.G16962 Trifolium pratense
TPR.G19398 Trifolium pratense
TPR.G20896 Trifolium pratense
TPR.G30756 Trifolium pratense
TWI12G0391 Tripterygium wilfordii
TWI31G1397 Tripterygium wilfordii
TWI75G0485 Tripterygium wilfordii
unitig_37.g13078 Utricularia gibba
unitig_699.g19161 Utricularia gibba
vmacro04107 Vaccinium macrocarpon
vmacro04108 Vaccinium macrocarpon
vmacro06015 Vaccinium macrocarpon
vmacro13124 Vaccinium macrocarpon
VMungo0251G1069 Vigna mungo
VMungo0251G2280 Vigna mungo
VMungo0251G2691 Vigna mungo
VMungo0540G0768 Vigna mungo
VMungo1383G2091 Vigna mungo
Zm00001eb097580 Zea mays
Zm00001eb177530 Zea mays
Zm00001eb309070 Zea mays
Zm00001eb405410 Zea mays

User provided reference genes

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