Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p41580 Brassica napus
A05p41600 Brassica napus
A06p38950 Brassica napus
A09p46160 Brassica napus
Aa31LG10G8340 Aethionema arabicum
Aa31LG5G16950 Aethionema arabicum
Aa31sc37G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_369.476 Anthoceros agrestis
Actinidia07529 Actinidia chinensis
Actinidia19409 Actinidia chinensis
Actinidia30070 Actinidia chinensis
Actinidia31080 Actinidia chinensis
Ah.07g203760 Amaranthus hybridus
Ah.10g038680 Amaranthus hybridus
AL3G17380 Arabidopsis lyrata
AL5G34050 Arabidopsis lyrata
AL8G21830 Arabidopsis lyrata
Aqoxy2G02534 Aquilegia oxysepala
Aqoxy5G00031 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.243BFB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4TV6QC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.60VEZT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P8X82K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V5R8RT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X6Z628 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZP1L4J Arachis hypogaea
AT3G06430 Arabidopsis thaliana
AT3G53170 Arabidopsis thaliana
AT5G48730 Arabidopsis thaliana
ATR0626G121 Amborella trichopoda
ATR0796G248 Amborella trichopoda
Atru.chr11.2583 Acer truncatum
Atru.chr5.2026 Acer truncatum
AUR62001095 Chenopodium quinoa
AUR62001096 Chenopodium quinoa
AUR62002564 Chenopodium quinoa
AUR62008920 Chenopodium quinoa
AUR62008921 Chenopodium quinoa
AUR62009402 Chenopodium quinoa
AUR62023085 Chenopodium quinoa
AUR62029985 Chenopodium quinoa
AUR62029986 Chenopodium quinoa
BcaB01g00305 Brassica carinata
BcaB01g00306 Brassica carinata
BcaB01g00307 Brassica carinata
BcaC05g29817 Brassica carinata
BcaC05g30026 Brassica carinata
BcaC06g30762 Brassica carinata
BcaC06g30763 Brassica carinata
BcaC07g39673 Brassica carinata
BolC5t34738H Brassica oleracea
BolC7t44458H Brassica oleracea
BolC8t50449H Brassica oleracea
BraA05t22879Z Brassica rapa
BraA06t26809Z Brassica rapa
BraA09t40080Z Brassica rapa
C05p60810 Brassica napus
C07p39380 Brassica napus
C08p28390 Brassica napus
CAN.G14.21 Capsicum annuum
CAN.G484.86 Capsicum annuum
CAN.G50.4 Capsicum annuum
CAN.G582.4 Capsicum annuum
CAN.G649.15 Capsicum annuum
CANSAT01G0558 Cannabis sativa
CANSAT35G0239 Cannabis sativa
CANSAT80G2404 Cannabis sativa
CARHR080960 Cardamine hirsuta
CARHR163140 Cardamine hirsuta
CARHR183130 Cardamine hirsuta
Carub.0003s0587 Capsella rubella
Carub.0005s1970 Capsella rubella
Carub.0008s0848 Capsella rubella
Ca_07638_v3 Cicer arietinum L.
Ca_19095_v3 Cicer arietinum L.
Ca_21383_v3 Cicer arietinum L.
Ca_26872_v3 Cicer arietinum L.
CBR_g10841 Chara braunii
CBR_g12023 Chara braunii
CBR_g23537 Chara braunii
CBR_g31213 Chara braunii
CBR_g38540 Chara braunii
Cc01_g16930 Coffea canephora
Cc01_g16940 Coffea canephora
Cc02_g28360 Coffea canephora
Cc03_g00220 Coffea canephora
CDE04G1668 Ceratophyllum demersum
CDE04G3359 Ceratophyllum demersum
CDE12G0140 Ceratophyllum demersum
Cfa002578 Carpinus fangiana
Cfa014645 Carpinus fangiana
Ciclev10004807m.g Citrus clementina
Ciclev10019744m.g Citrus clementina
Ciclev10020011m.g Citrus clementina
CiPaw.02G070600 Carya illinoinensis
CiPaw.04G104900 Carya illinoinensis
CiPaw.14G002100 Carya illinoinensis
ClCG06G004250 Citrullus lanatus
ClCG09G003940 Citrullus lanatus
ClCG09G008970 Citrullus lanatus
COL.COLO4_04875 Corchorus olitorius
COL.COLO4_15672 Corchorus olitorius
COL.COLO4_34526 Corchorus olitorius
Cpa.g.sc146.33 Carica papaya
Cpa.g.sc8.143 Carica papaya
CsaV3_6G000170 Cucumis sativus L.
CsaV3_7G026080 Cucumis sativus L.
CsaV3_7G030850 Cucumis sativus L.
CSS0002295 Camellia sinensis var. sinensis
CSS0004396 Camellia sinensis var. sinensis
CSS0033397 Camellia sinensis var. sinensis
CSS0039833 Camellia sinensis var. sinensis
CSS0040613 Camellia sinensis var. sinensis
DCAR_004720 Daucus carota
DCAR_016451 Daucus carota
DCAR_026955 Daucus carota
Dinv09324 Davidia involucrata
Dinv12682 Davidia involucrata
Dinv29518 Davidia involucrata
Duzib133G0213 Durio zibethinus
Duzib138G0054 Durio zibethinus
Duzib151G0917 Durio zibethinus
ECA232G3256 Erigeron canadensis
ECA233G0980 Erigeron canadensis
ECA236G0552 Erigeron canadensis
EL10Ac2g03860 Beta vulgaris
EL10Ac2g04350 Beta vulgaris
EL10Ac3g06265 Beta vulgaris
EL10Ac7g17850 Beta vulgaris
Eucgr.A01491 Eucalyptus grandis
Eucgr.G03360 Eucalyptus grandis
Eucgr.K02161 Eucalyptus grandis
FAN01G1074 Fragaria x ananassa
FAN03G3349 Fragaria x ananassa
FAN04G2077 Fragaria x ananassa
FAN06G3831 Fragaria x ananassa
FAN07G0256 Fragaria x ananassa
FAN08G2977 Fragaria x ananassa
FAN10G0484 Fragaria x ananassa
FAN12G4042 Fragaria x ananassa
FAN17G0100 Fragaria x ananassa
FAN18G1972 Fragaria x ananassa
FAN27G0516 Fragaria x ananassa
FvH4_4g21400 Fragaria vesca
FvH4_5g33190 Fragaria vesca
FvH4_7g01420 Fragaria vesca
Glyma.08G352500 Glycine max
Glyma.09G082100 Glycine max
Glyma.14G007500 Glycine max
Glyma.17G034600 Glycine max
Glyma.17G039500 Glycine max
Gohir.A08G055001 Gossypium hirsutum
Gohir.A10G176300 Gossypium hirsutum
Gohir.A11G138700 Gossypium hirsutum
Gohir.D08G064500 Gossypium hirsutum
Gohir.D10G183000 Gossypium hirsutum
Gohir.D11G144900 Gossypium hirsutum
Gorai.004G066800 Gossypium raimondii
Gorai.007G155400 Gossypium raimondii
Gorai.011G205100 Gossypium raimondii
GSVIVG01017677001 Vitis vinifera
GSVIVG01028689001 Vitis vinifera
GSVIVG01032162001 Vitis vinifera
HanXRQChr04g0108171 Helianthus annuus
HanXRQChr08g0236261 Helianthus annuus
HanXRQChr15g0488271 Helianthus annuus
HanXRQChr16g0501781 Helianthus annuus
Haze_00790 Corylus avellana
Haze_03158 Corylus avellana
Haze_24811 Corylus avellana
Hma1.2p1_1399F.1_g280850 Hydrangea macrophylla
HPP92_002622 Vanilla planifolia
HPP92_002695 Vanilla planifolia
HPP92_022336 Vanilla planifolia
HPP92_022359 Vanilla planifolia
HPP92_023347 Vanilla planifolia
Hund15421 Selenicereus undatus
Hund18390 Selenicereus undatus
Hund22619 Selenicereus undatus
Lalb_Chr07g0181761 Lupinus albus
Lalb_Chr11g0073511 Lupinus albus
Lalb_Chr12g0200631 Lupinus albus
Lalb_Chr19g0125661 Lupinus albus
Lalb_Chr25g0282471 Lupinus albus
Lj1g0021736 Lotus japonicus
Lj3g0021087 Lotus japonicus
Lj4g0024045 Lotus japonicus
Lj6A353T84 Lonicera japonica
Lj6A353T85 Lonicera japonica
Lj6A358T55 Lonicera japonica
Lj6A699G68 Lonicera japonica
Lj6g0005216 Lotus japonicus
Lj9A638T72 Lonicera japonica
Lsat_1_v5_gn_1_39801 Lactuca sativa
Lsat_1_v5_gn_4_115801 Lactuca sativa
Lsat_1_v5_gn_6_71420 Lactuca sativa
Lsat_1_v5_gn_8_89800 Lactuca sativa
Manes.03G211100 Manihot esculenta
Manes.07G008000 Manihot esculenta
Manes.12G045500 Manihot esculenta
Mapoly0059s0080 Marchantia polymorpha
Mapoly0147s0011 Marchantia polymorpha
MBI07_g05481_MAGBIO Magnolia biondii
MBI17_g35770_MAGBIO Magnolia biondii
MD02G1305700 Malus domestica
MD02G1306000 Malus domestica
MD05G1174300 Malus domestica
MD10G1163400 Malus domestica
MD13G1141500 Malus domestica
MD16G1137800 Malus domestica
Medtr1g033450 Medicago truncatula
Medtr3g030970 Medicago truncatula
Medtr3g030990 Medicago truncatula
Medtr3g033040 Medicago truncatula
Medtr4g123860 Medicago truncatula
Medtr7g056613 Medicago truncatula
Medtr8g041640 Medicago truncatula
MELO3C021027.2 Cucumis melo
MELO3C021235.2 Cucumis melo
MELO3C023572.2 Cucumis melo
Migut.D02488 Erythranthe guttata
Migut.K01514 Erythranthe guttata
Migut.N00010 Erythranthe guttata
Migut.N01786 Erythranthe guttata
MSTRG.20959 Avicennia marina
MSTRG.21746 Avicennia marina
MSTRG.5036 Avicennia marina
Nitab4.5_0000087g0090 Nicotiana tabacum
Nitab4.5_0000180g0110 Nicotiana tabacum
Nitab4.5_0000180g0130 Nicotiana tabacum
Nitab4.5_0000895g0210 Nicotiana tabacum
Nitab4.5_0001146g0150 Nicotiana tabacum
Nitab4.5_0001568g0160 Nicotiana tabacum
Nitab4.5_0001676g0060 Nicotiana tabacum
Nitab4.5_0004665g0040 Nicotiana tabacum
Nn1g07882 Nelumbo nucifera
Nn1g09634 Nelumbo nucifera
Nn8g40891 Nelumbo nucifera
Oeu006556.1 Olea europaea
Oeu012215.1 Olea europaea
Oeu020033.1 Olea europaea
Oeu030465.1 Olea europaea
Oeu043135.1 Olea europaea
Os03g0115300 Oryza sativa ssp. japonica
Os03g0309800 Oryza sativa ssp. japonica
Os06g0172000 Oryza sativa ssp. japonica
Peaxi162Scf00071g01040 Petunia axillaris
Peaxi162Scf00126g01125 Petunia axillaris
Peaxi162Scf00288g01313 Petunia axillaris
Peaxi162Scf00288g01314 Petunia axillaris
Peaxi162Scf00403g00211 Petunia axillaris
PGR031G1422 Punica granatum
PGR031G1510 Punica granatum
PGR044G1326 Punica granatum
PGSC0003DMG400003133 Solanum tuberosum
PGSC0003DMG400004604 Solanum tuberosum
PGSC0003DMG400008611 Solanum tuberosum
PGSC0003DMG400032206 Solanum tuberosum
Phvul.003G120600 Phaseolus vulgaris
Phvul.008G126700 Phaseolus vulgaris
Phvul.008G285500 Phaseolus vulgaris
Phvul.009G219100 Phaseolus vulgaris
Potri.002G243600 Populus trichocarpa
Potri.008G098700 Populus trichocarpa
Potri.009G058300 Populus trichocarpa
Potri.010G153900 Populus trichocarpa
Pp3c20_15110 Physcomitrium patens
Pp3c23_19160 Physcomitrium patens
Pp3c8_13830 Physcomitrium patens
PRCOL_00002211 Prasinoderma coloniale
PRCOL_00004034 Prasinoderma coloniale
Prupe.1G106700 Prunus persica
Prupe.2G019900 Prunus persica
Prupe.8G201700 Prunus persica
Psat0ss1196g0240 Pisum sativum
Psat3g145680 Pisum sativum
Psat5g209840 Pisum sativum
PSO063G6602 Papaver somniferum
PSO210G0586 Papaver somniferum
PSO674G0008 Papaver somniferum
PSO761G0432 Papaver somniferum
PSO782G1225 Papaver somniferum
PSO832G0330 Papaver somniferum
QL04p008865 Quercus lobata
QL06p014037 Quercus lobata
QL09p053959 Quercus lobata
RcHm_v2.0_Chr1g0317271 Rosa chinensis
RcHm_v2.0_Chr1g0373361 Rosa chinensis
RcHm_v2.0_Chr4g0427331 Rosa chinensis
RcHm_v2.0_Chr7g0231531 Rosa chinensis
Rhsim02G0000400 Rhododendron simsii
Rhsim04G0247500 Rhododendron simsii
Rhsim07G0058000 Rhododendron simsii
Rhsim13G0045700 Rhododendron simsii
Rhsim13G0046000 Rhododendron simsii
Rhsim13G0055300 Rhododendron simsii
Sabra09G0042900 Salix brachista
Sabra10G0118500 Salix brachista
SalBow5G0706 Salvia bowleyana
SalBow6G1157 Salvia bowleyana
SalBow6G2927 Salvia bowleyana
SalBow6G5562 Salvia bowleyana
SalBow6G6670 Salvia bowleyana
SalBow6G7015 Salvia bowleyana
Sc14g0005010 Simmondsia chinensis
Sc17g0002310 Simmondsia chinensis
Sc17g0002360 Simmondsia chinensis
Sc19g0002120 Simmondsia chinensis
Sed0001001 Sechium edule
Sed0015503 Sechium edule
Sed0019547 Sechium edule
Sed0024001 Sechium edule
SEGI_20018 Sequoiadendron giganteum
SEGI_26661 Sequoiadendron giganteum
SEGI_31683 Sequoiadendron giganteum
SGA_v2.0_scaffold123G33423 Striga asiatica
SGA_v2.0_scaffold171G38942 Striga asiatica
SGA_v2.0_scaffold36G14402 Striga asiatica
SMO298G0051 Selaginella moellendorffii
Solyc01g006500.4 Solanum lycopersicum
Solyc01g057200.4 Solanum lycopersicum
Solyc08g045780.4 Solanum lycopersicum
Solyc12g098990.2 Solanum lycopersicum
Sopen01g002480 Solanum pennellii
Sopen01g021730 Solanum pennellii
Sopen08g013850 Solanum pennellii
Sopen12g033730 Solanum pennellii
Sp2g19140 Schrenkiella parvula
Sp3g05350 Schrenkiella parvula
Sp5g09160 Schrenkiella parvula
TAR365G0174 Trochodendron aralioides
TAR633G1986 Trochodendron aralioides
TAR633G2494 Trochodendron aralioides
TAR633G2615 Trochodendron aralioides
TAR636G0056 Trochodendron aralioides
THA.LOC104802670 Tarenaya hassleriana
THA.LOC104818854 Tarenaya hassleriana
THA.LOC104826684 Tarenaya hassleriana
Thecc.01G224400 Theobroma cacao
Thecc.01G407600 Theobroma cacao
Thecc.04G311700 Theobroma cacao
Thhalv10004021m.g Eutrema salsugineum
Thhalv10011131m.g Eutrema salsugineum
Thhalv10020626m.g Eutrema salsugineum
TPR.G12657 Trifolium pratense
TPR.G28387 Trifolium pratense
TPR.G31105 Trifolium pratense
TPR.G39697 Trifolium pratense
TPR.G40073 Trifolium pratense
TWI09G0293 Tripterygium wilfordii
TWI09G1636 Tripterygium wilfordii
TWI18G0520 Tripterygium wilfordii
unitig_8.g2885 Utricularia gibba
vmacro00256 Vaccinium macrocarpon
vmacro00260 Vaccinium macrocarpon
vmacro02764 Vaccinium macrocarpon
vmacro02765 Vaccinium macrocarpon
vmacro08004 Vaccinium macrocarpon
vmacro13689 Vaccinium macrocarpon
VMungo0647G0382 Vigna mungo
VMungo0647G1551 Vigna mungo
VMungo1215G2020 Vigna mungo
VMungo1309G1222 Vigna mungo
VMungo1383G2648 Vigna mungo
Zm00001eb001020 Zea mays
Zm00001eb281690 Zea mays
Zm00001eb298940 Zea mays

User provided reference genes

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