Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p07900 Brassica napus
A02p33940 Brassica napus
A07p01800 Brassica napus
A07p11660 Brassica napus
A08p19330 Brassica napus
A08p26090 Brassica napus
A09p27260 Brassica napus
Aa31LG2G20280 Aethionema arabicum
Aa31LG8G15950 Aethionema arabicum
Actinidia04149 Actinidia chinensis
Actinidia05430 Actinidia chinensis
Actinidia08260 Actinidia chinensis
Actinidia10183 Actinidia chinensis
Actinidia17112 Actinidia chinensis
Actinidia22677 Actinidia chinensis
Actinidia38094 Actinidia chinensis
Ah.01g022710 Amaranthus hybridus
Ah.05g167210 Amaranthus hybridus
AL1G41230 Arabidopsis lyrata
AL3G53080 Arabidopsis lyrata
AL7G21910 Arabidopsis lyrata
Aqoxy4G02778 Aquilegia oxysepala
Aqoxy6G02763 Aquilegia oxysepala
Aqoxy7G02324 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4ZCW5F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6ULA6T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BX8W5K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KI1LIS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N76PQP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P7PTW7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R8TPV6 Arachis hypogaea
AT1G27700 Arabidopsis thaliana
AT2G18860 Arabidopsis thaliana
AT4G30240 Arabidopsis thaliana
ATR0580G177 Amborella trichopoda
ATR0776G059 Amborella trichopoda
Atru.chr13.802 Acer truncatum
Atru.chr7.650 Acer truncatum
Atru.chr8.1535 Acer truncatum
Atru.chr8.1536 Acer truncatum
AUR62010078 Chenopodium quinoa
AUR62013072 Chenopodium quinoa
BcaB02g10899 Brassica carinata
BcaB03g12639 Brassica carinata
BcaB03g13974 Brassica carinata
BcaB03g16676 Brassica carinata
BcaB07g32140 Brassica carinata
BcaB07g33261 Brassica carinata
BcaC01g01162 Brassica carinata
BcaC01g01580 Brassica carinata
BcaC01g05548 Brassica carinata
BcaC01g06933 Brassica carinata
BcaC02g09705 Brassica carinata
BcaC05g29132 Brassica carinata
BcaC06g35311 Brassica carinata
BcaC06g36478 Brassica carinata
BcaC09g49881 Brassica carinata
BcaC09g51806 Brassica carinata
BcaNung03007 Brassica carinata
BolC1t00872H Brassica oleracea
BolC1t03113H Brassica oleracea
BolC3t14896H Brassica oleracea
BolC3t19698H Brassica oleracea
BolC3t21190H Brassica oleracea
BolC5t34040H Brassica oleracea
BolC7t42264H Brassica oleracea
BraA01t00736Z Brassica rapa
BraA01t03449Z Brassica rapa
BraA07t27979Z Brassica rapa
BraA07t28951Z Brassica rapa
BraA08t33894Z Brassica rapa
BraA08t34561Z Brassica rapa
C01p08820 Brassica napus
C01p18240 Brassica napus
C01p32290 Brassica napus
C02p34270 Brassica napus
C03p25050 Brassica napus
C03p74500 Brassica napus
C03p88790 Brassica napus
C04p37510 Brassica napus
C05p53680 Brassica napus
C07p03870 Brassica napus
C07p17570 Brassica napus
CAN.G1054.22 Capsicum annuum
CAN.G107.5 Capsicum annuum
CANSAT11G2423 Cannabis sativa
CANSAT80G1305 Cannabis sativa
CARHR027200 Cardamine hirsuta
CARHR109430 Cardamine hirsuta
CARHR238150 Cardamine hirsuta
Carub.0001s2621 Capsella rubella
Carub.0003s3309 Capsella rubella
Carub.0007s1037 Capsella rubella
Ca_21172_v3 Cicer arietinum L.
Ca_21221_v3 Cicer arietinum L.
Cc06_g13280 Coffea canephora
Cc10_g05540 Coffea canephora
CDE01G0477 Ceratophyllum demersum
CDE02G0397 Ceratophyllum demersum
CDE02G1182 Ceratophyllum demersum
CDE04G1566 Ceratophyllum demersum
CDE04G3029 Ceratophyllum demersum
CDE06G0868 Ceratophyllum demersum
CDE08G0724 Ceratophyllum demersum
Cfa013510 Carpinus fangiana
Cfa016608 Carpinus fangiana
Cfa018023 Carpinus fangiana
Ciclev10001640m.g Citrus clementina
Ciclev10008878m.g Citrus clementina
Ciclev10013767m.g Citrus clementina
CiPaw.07G192100 Carya illinoinensis
CiPaw.08G036600 Carya illinoinensis
CiPaw.09G014100 Carya illinoinensis
CiPaw.15G047500 Carya illinoinensis
CiPaw.16G034600 Carya illinoinensis
ClCG06G013310 Citrullus lanatus
ClCG08G016340 Citrullus lanatus
ClCG11G012180 Citrullus lanatus
COL.COLO4_05881 Corchorus olitorius
COL.COLO4_28542 Corchorus olitorius
COL.COLO4_29733 Corchorus olitorius
Cpa.g.sc21.116 Carica papaya
Cpa.g.sc95.53 Carica papaya
CsaV3_1G031570 Cucumis sativus L.
CsaV3_2G008360 Cucumis sativus L.
CsaV3_2G026270 Cucumis sativus L.
CSS0009422 Camellia sinensis var. sinensis
CSS0015353 Camellia sinensis var. sinensis
CSS0041553 Camellia sinensis var. sinensis
DCAR_007753 Daucus carota
DCAR_018510 Daucus carota
DCAR_020123 Daucus carota
Dinv00907 Davidia involucrata
Dinv15120 Davidia involucrata
Dinv21207 Davidia involucrata
Dinv39239 Davidia involucrata
Dinv42725 Davidia involucrata
Dinv43376 Davidia involucrata
Dinv44979 Davidia involucrata
Duzib041G0439 Durio zibethinus
Duzib093G0624 Durio zibethinus
Duzib106G0356 Durio zibethinus
Duzib116G0147 Durio zibethinus
Duzib168G0595 Durio zibethinus
Duzib170G0281 Durio zibethinus
ECA232G3701 Erigeron canadensis
ECA236G3137 Erigeron canadensis
ECA247G0688 Erigeron canadensis
EL10Ac9g21425 Beta vulgaris
EL10As7g23814 Beta vulgaris
Eucgr.C02306 Eucalyptus grandis
Eucgr.F00123 Eucalyptus grandis
FAN02G2375 Fragaria x ananassa
FAN05G0980 Fragaria x ananassa
FAN05G2778 Fragaria x ananassa
FAN07G2300 Fragaria x ananassa
FAN12G2304 Fragaria x ananassa
FAN14G2130 Fragaria x ananassa
FAN15G3018 Fragaria x ananassa
FAN17G2960 Fragaria x ananassa
FAN20G0140 Fragaria x ananassa
FAN22G0655 Fragaria x ananassa
FAN22G1990 Fragaria x ananassa
FAN24G2944 Fragaria x ananassa
FAN27G0486 Fragaria x ananassa
FvH4_2g33360 Fragaria vesca
FvH4_4g08300 Fragaria vesca
FvH4_6g18710 Fragaria vesca
Glyma.04G044400 Glycine max
Glyma.06G044900 Glycine max
Glyma.17G063600 Glycine max
Glyma.17G236900 Glycine max
Glyma.20G083500 Glycine max
Gohir.A01G137900 Gossypium hirsutum
Gohir.A02G081502 Gossypium hirsutum
Gohir.A04G063670 Gossypium hirsutum
Gohir.A04G063955 Gossypium hirsutum
Gohir.A05G004500 Gossypium hirsutum
Gohir.A05G207800 Gossypium hirsutum
Gohir.A08G023208 Gossypium hirsutum
Gohir.A08G023300 Gossypium hirsutum
Gohir.D01G127600 Gossypium hirsutum
Gohir.D02G089300 Gossypium hirsutum
Gohir.D04G100001 Gossypium hirsutum
Gohir.D05G005300 Gossypium hirsutum
Gohir.D05G005400 Gossypium hirsutum
Gohir.D05G211300 Gossypium hirsutum
Gohir.D08G033800 Gossypium hirsutum
Gorai.002G158200 Gossypium raimondii
Gorai.004G031400 Gossypium raimondii
Gorai.005G100000 Gossypium raimondii
Gorai.009G005200 Gossypium raimondii
Gorai.009G217800 Gossypium raimondii
Gorai.009G402900 Gossypium raimondii
GSVIVG01009373001 Vitis vinifera
GSVIVG01029204001 Vitis vinifera
GSVIVG01033845001 Vitis vinifera
HanXRQChr01g0003261 Helianthus annuus
HanXRQChr02g0035531 Helianthus annuus
HanXRQChr05g0143041 Helianthus annuus
HanXRQChr09g0266501 Helianthus annuus
Haze_18107 Corylus avellana
Haze_19612 Corylus avellana
Haze_22101 Corylus avellana
Haze_22103 Corylus avellana
Hma1.2p1_0923F.1_g237010 Hydrangea macrophylla
Hma1.2p1_1710F.1_g298630 Hydrangea macrophylla
Hma1.2p1_3184F.1_g333750 Hydrangea macrophylla
HPP92_023676 Vanilla planifolia
HPP92_023677 Vanilla planifolia
HPP92_023693 Vanilla planifolia
Hund00037 Selenicereus undatus
Hund05316 Selenicereus undatus
Hund06413 Selenicereus undatus
Lalb_Chr07g0180451 Lupinus albus
Lalb_Chr08g0245491 Lupinus albus
Lalb_Chr11g0062831 Lupinus albus
Lalb_Chr12g0199371 Lupinus albus
Lalb_Chr13g0300251 Lupinus albus
Lalb_Chr22g0354761 Lupinus albus
Lalb_Chr23g0267421 Lupinus albus
Lj1g0001237 Lotus japonicus
Lj4A68T47 Lonicera japonica
Lj4g0002153 Lotus japonicus
Lj5A50T70 Lonicera japonica
Lj5g0006793 Lotus japonicus
Lj9A685T57 Lonicera japonica
Lsat_1_v5_gn_1_22780 Lactuca sativa
Lsat_1_v5_gn_4_129341 Lactuca sativa
Lsat_1_v5_gn_8_66841 Lactuca sativa
Manes.09G055400 Manihot esculenta
Manes.14G153000 Manihot esculenta
Manes.18G044100 Manihot esculenta
MBI14_g17364_MAGBIO Magnolia biondii
MBI16_g16445_MAGBIO Magnolia biondii
MBI17_g08347_MAGBIO Magnolia biondii
MD08G1088200 Malus domestica
MD12G1036300 Malus domestica
MD13G1255100 Malus domestica
MD14G1023100 Malus domestica
MD15G1073000 Malus domestica
MD16G1258200 Malus domestica
Medtr1g018550 Medicago truncatula
Medtr3g102790 Medicago truncatula
Medtr4g128220 Medicago truncatula
MELO3C004028.2 Cucumis melo
MELO3C010819.2 Cucumis melo
MELO3C017467.2 Cucumis melo
Migut.C00502 Erythranthe guttata
Migut.J01475 Erythranthe guttata
Migut.K00243 Erythranthe guttata
Migut.L01779 Erythranthe guttata
MSTRG.10366 Avicennia marina
MSTRG.1041 Avicennia marina
MSTRG.10737 Avicennia marina
MSTRG.25047 Avicennia marina
MSTRG.26222 Avicennia marina
MSTRG.6211 Avicennia marina
Nitab4.5_0000569g0110 Nicotiana tabacum
Nitab4.5_0000934g0130 Nicotiana tabacum
Nitab4.5_0004707g0010 Nicotiana tabacum
Nitab4.5_0007809g0020 Nicotiana tabacum
Nn1g04627 Nelumbo nucifera
Nn2g12715 Nelumbo nucifera
Nn5g30508 Nelumbo nucifera
Nn6g34901 Nelumbo nucifera
Oeu004193.1 Olea europaea
Oeu012053.1 Olea europaea
Oeu037505.1 Olea europaea
Oeu042161.1 Olea europaea
Oeu047202.2 Olea europaea
Os03g0207200 Oryza sativa ssp. japonica
Os05g0443700 Oryza sativa ssp. japonica
Os08g0244100 Oryza sativa ssp. japonica
Os10g0343100 Oryza sativa ssp. japonica
Peaxi162Scf00081g01225 Petunia axillaris
Peaxi162Scf00113g01510 Petunia axillaris
Peaxi162Scf00160g00124 Petunia axillaris
PGR083G2667 Punica granatum
PGR102G3005 Punica granatum
PGR142G2552 Punica granatum
PGSC0003DMG400021515 Solanum tuberosum
PGSC0003DMG401011550 Solanum tuberosum
Phvul.001G026000 Phaseolus vulgaris
Phvul.003G146200 Phaseolus vulgaris
Phvul.009G070300 Phaseolus vulgaris
Potri.004G090200 Populus trichocarpa
Potri.006G168800 Populus trichocarpa
Potri.014G019100 Populus trichocarpa
Potri.017G125000 Populus trichocarpa
Potri.018G093400 Populus trichocarpa
Prupe.1G086200 Prunus persica
Prupe.1G425900 Prunus persica
Prupe.7G110100 Prunus persica
Psat0s509g0040 Pisum sativum
Psat5g038280 Pisum sativum
Psat6g015360 Pisum sativum
PSO017G2561 Papaver somniferum
PSO170G0946 Papaver somniferum
PSO339G5700 Papaver somniferum
PSO384G2448 Papaver somniferum
PSO541G4039 Papaver somniferum
PSO675G9232 Papaver somniferum
QL02p002836 Quercus lobata
QL02p097655 Quercus lobata
QL07p038751 Quercus lobata
QL07p039002 Quercus lobata
RcHm_v2.0_Chr3g0473681 Rosa chinensis
RcHm_v2.0_Chr4g0402571 Rosa chinensis
RcHm_v2.0_Chr6g0309221 Rosa chinensis
Rhsim01G0004900 Rhododendron simsii
Rhsim07G0222100 Rhododendron simsii
Sabra06G0130200 Salix brachista
Sabra14G0012500 Salix brachista
Sabra17G0105200 Salix brachista
Sabra18G0080200 Salix brachista
SalBow1G3656 Salvia bowleyana
SalBow6G5740 Salvia bowleyana
SalBow7G0218 Salvia bowleyana
Sc02g0007750 Simmondsia chinensis
Sc14g0002180 Simmondsia chinensis
Sed0002632 Sechium edule
Sed0010091 Sechium edule
Sed0028155 Sechium edule
SEGI_18719 Sequoiadendron giganteum
SEGI_25030 Sequoiadendron giganteum
SEGI_25874 Sequoiadendron giganteum
SEGI_31559 Sequoiadendron giganteum
SGA_v2.0_scaffold12G06069 Striga asiatica
SGA_v2.0_scaffold184G39964 Striga asiatica
SGA_v2.0_scaffold69G23258 Striga asiatica
SGA_v2.0_scaffold96G29080 Striga asiatica
SMO112G0077 Selaginella moellendorffii
SMO364G0964 Selaginella moellendorffii
Solyc04g078130.4 Solanum lycopersicum
Solyc12g088440.2 Solanum lycopersicum
Sopen04g031760 Solanum pennellii
Sopen12g030420 Solanum pennellii
Sp1g23930 Schrenkiella parvula
Sp3g32330 Schrenkiella parvula
Sp7g28120 Schrenkiella parvula
TAR381G1311 Trochodendron aralioides
TAR623G0667 Trochodendron aralioides
TAR623G1109 Trochodendron aralioides
TAR625G0267 Trochodendron aralioides
TAR625G0598 Trochodendron aralioides
TAR636G2366 Trochodendron aralioides
THA.LOC104803498 Tarenaya hassleriana
THA.LOC104820507 Tarenaya hassleriana
Thecc.05G089200 Theobroma cacao
Thecc.08G092100 Theobroma cacao
Thecc.09G172700 Theobroma cacao
Thhalv10008228m.g Eutrema salsugineum
Thhalv10025801m.g Eutrema salsugineum
TPR.G33704 Trifolium pratense
TPR.G3749 Trifolium pratense
TPR.G5412 Trifolium pratense
TWI12G0709 Tripterygium wilfordii
TWI34G1116 Tripterygium wilfordii
TWI53G1451 Tripterygium wilfordii
unitig_0.g573 Utricularia gibba
unitig_52.g17195 Utricularia gibba
unitig_8.g5039 Utricularia gibba
unitig_8.g5040 Utricularia gibba
vmacro04584 Vaccinium macrocarpon
vmacro07409 Vaccinium macrocarpon
vmacro13122 Vaccinium macrocarpon
VMungo0647G1077 Vigna mungo
VMungo1215G2460 Vigna mungo
VMungo1309G1211 Vigna mungo
Zm00001eb007250 Zea mays
Zm00001eb288940 Zea mays
Zm00001eb414700 Zea mays

User provided reference genes

Program Settings