Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p39120 Brassica napus
A03p19170 Brassica napus
A03p38880 Brassica napus
A04p26410 Brassica napus
A05p34810 Brassica napus
A08p24780 Brassica napus
Aa31LG6G5720 Aethionema arabicum
Aa31LG8G1860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.691 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.735 Anthoceros agrestis
Actinidia07687 Actinidia chinensis
Actinidia16717 Actinidia chinensis
Actinidia19518 Actinidia chinensis
Actinidia39565 Actinidia chinensis
Ah.09g232670 Amaranthus hybridus
Ah.14g086460 Amaranthus hybridus
AL1G43840 Arabidopsis lyrata
AL3G26940 Arabidopsis lyrata
AL4G30450 Arabidopsis lyrata
Aqoxy1G01730 Aquilegia oxysepala
Aqoxy7G03413 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.406MLV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7BIG84 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GD87LF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I5J4MY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W1WXN3 Arachis hypogaea
AT1G29965 Arabidopsis thaliana
AT1G29970 Arabidopsis thaliana
AT2G34480 Arabidopsis thaliana
AT3G14600 Arabidopsis thaliana
ATR0661G184 Amborella trichopoda
ATR0661G549 Amborella trichopoda
ATR0693G218 Amborella trichopoda
Atru.chr10.1270 Acer truncatum
Atru.chr6.2053 Acer truncatum
AUR62004108 Chenopodium quinoa
AUR62007622 Chenopodium quinoa
AUR62027520 Chenopodium quinoa
AUR62030215 Chenopodium quinoa
BcaB01g06365 Brassica carinata
BcaB02g09538 Brassica carinata
BcaB03g12187 Brassica carinata
BcaB04g18855 Brassica carinata
BcaB06g25370 Brassica carinata
BcaB06g28773 Brassica carinata
BcaC01g00146 Brassica carinata
BcaC01g05791 Brassica carinata
BcaC01g05792 Brassica carinata
BcaC02g11511 Brassica carinata
BcaC05g29052 Brassica carinata
BcaC09g48429 Brassica carinata
BcaC09g48435 Brassica carinata
BolC1t04939H Brassica oleracea
BolC3t14619H Brassica oleracea
BolC3t16977H Brassica oleracea
BolC3t19885H Brassica oleracea
BolC4t27849H Brassica oleracea
BolC5t33944H Brassica oleracea
BraA01t03960Z Brassica rapa
BraA03t11172Z Brassica rapa
BraA03t13040Z Brassica rapa
BraA04t18145Z Brassica rapa
BraA05t20065Z Brassica rapa
BraA05t22294Z Brassica rapa
BraA08t34432Z Brassica rapa
C01p49810 Brassica napus
C01p49850 Brassica napus
C03p22370 Brassica napus
C03p47100 Brassica napus
C03p76280 Brassica napus
C04p63820 Brassica napus
C05p52640 Brassica napus
CAN.G669.1 Capsicum annuum
CAN.G686.1 Capsicum annuum
CANSAT21G1272 Cannabis sativa
CANSAT25G2092 Cannabis sativa
CANSAT35G0849 Cannabis sativa
CARHR029430 Cardamine hirsuta
CARHR089580 Cardamine hirsuta
CARHR128570 Cardamine hirsuta
Carub.0001s2821 Capsella rubella
Carub.0003s1431 Capsella rubella
Carub.0004s1615 Capsella rubella
Ca_00554_v3 Cicer arietinum L.
Ca_03337_v3 Cicer arietinum L.
Ca_06268_v3 Cicer arietinum L.
CBR_g16949 Chara braunii
Cc09_g09320 Coffea canephora
CDE02G3735 Ceratophyllum demersum
CDE08G0452 Ceratophyllum demersum
CDE09G1437 Ceratophyllum demersum
Cfa000956 Carpinus fangiana
Cfa019476 Carpinus fangiana
Ciclev10016900m.g Citrus clementina
Ciclev10022114m.g Citrus clementina
Ciclev10032878m.g Citrus clementina
CiPaw.09G125300 Carya illinoinensis
CiPaw.10G092700 Carya illinoinensis
ClCG01G024540 Citrullus lanatus
ClCG03G007060 Citrullus lanatus
ClCG11G016510 Citrullus lanatus
COL.COLO4_08892 Corchorus olitorius
COL.COLO4_31093 Corchorus olitorius
Cpa.g.sc166.21 Carica papaya
Cpa.g.sc19.3 Carica papaya
Cre01.g047750 Chlamydomonas reinhardtii
CsaV3_1G032610 Cucumis sativus L.
CsaV3_4G031960 Cucumis sativus L.
CsaV3_6G051660 Cucumis sativus L.
DCAR_003922 Daucus carota
DCAR_005124 Daucus carota
DCAR_027928 Daucus carota
Dinv30728 Davidia involucrata
Dinv32269 Davidia involucrata
Duzib138G0616 Durio zibethinus
Duzib160G0217 Durio zibethinus
Duzib192G0879 Durio zibethinus
Duzib235G1048 Durio zibethinus
ECA234G4803 Erigeron canadensis
ECA236G0831 Erigeron canadensis
EL10Ac8g19735 Beta vulgaris
EL10As8g23885 Beta vulgaris
Eucgr.A02018 Eucalyptus grandis
Eucgr.D00304 Eucalyptus grandis
FAN05G4574 Fragaria x ananassa
FAN09G2138 Fragaria x ananassa
FAN11G3000 Fragaria x ananassa
FAN14G1954 Fragaria x ananassa
FAN16G2998 Fragaria x ananassa
FAN21G1778 Fragaria x ananassa
FAN21G2892 Fragaria x ananassa
FAN25G1262 Fragaria x ananassa
FvH4_3g05760 Fragaria vesca
FvH4_6g38600 Fragaria vesca
Glyma.02G284900 Glycine max
Glyma.08G307702 Glycine max
Glyma.10G106200 Glycine max
Glyma.13G217100 Glycine max
Glyma.14G029901 Glycine max
Glyma.15G095400 Glycine max
Glyma.18G110000 Glycine max
Gohir.A05G149300 Gossypium hirsutum
Gohir.A07G118500 Gossypium hirsutum
Gohir.A07G182900 Gossypium hirsutum
Gohir.A09G077600 Gossypium hirsutum
Gohir.A09G126000 Gossypium hirsutum
Gohir.A10G039800 Gossypium hirsutum
Gohir.A10G039900 Gossypium hirsutum
Gohir.A11G157000 Gossypium hirsutum
Gohir.A11G237301 Gossypium hirsutum
Gohir.D01G114440 Gossypium hirsutum
Gohir.D03G037600 Gossypium hirsutum
Gohir.D05G151900 Gossypium hirsutum
Gohir.D07G189700 Gossypium hirsutum
Gohir.D08G229750 Gossypium hirsutum
Gohir.D09G077800 Gossypium hirsutum
Gohir.D10G040600 Gossypium hirsutum
Gohir.D10G040700 Gossypium hirsutum
Gohir.D11G164000 Gossypium hirsutum
Gorai.001G211400 Gossypium raimondii
Gorai.002G139600 Gossypium raimondii
Gorai.005G060100 Gossypium raimondii
Gorai.006G092900 Gossypium raimondii
Gorai.007G174800 Gossypium raimondii
Gorai.009G155900 Gossypium raimondii
Gorai.011G042800 Gossypium raimondii
Gorai.011G042900 Gossypium raimondii
GSVIVG01000485001 Vitis vinifera
GSVIVG01021430001 Vitis vinifera
GSVIVG01021433001 Vitis vinifera
HanXRQChr04g0118331 Helianthus annuus
HanXRQChr12g0374931 Helianthus annuus
HanXRQChr15g0480121 Helianthus annuus
HanXRQChr16g0525171 Helianthus annuus
HanXRQChr17g0564331 Helianthus annuus
Haze_05580 Corylus avellana
Haze_08470 Corylus avellana
Haze_26285 Corylus avellana
Hma1.2p1_0286F.1_g114120 Hydrangea macrophylla
HPP92_022077 Vanilla planifolia
HPP92_025823 Vanilla planifolia
Hund17798 Selenicereus undatus
Hund21527 Selenicereus undatus
Lalb_Chr15g0086931 Lupinus albus
Lalb_Chr18g0055581 Lupinus albus
Lalb_Chr20g0118031 Lupinus albus
Lj1A1186G52 Lonicera japonica
Lj1A831G67 Lonicera japonica
Lj6g0008564 Lotus japonicus
Lj6g0022878 Lotus japonicus
LjContig00049g0019797 Lotus japonicus
Lsat_1_v5_gn_3_132821 Lactuca sativa
Lsat_1_v5_gn_3_135781 Lactuca sativa
Lsat_1_v5_gn_4_28960 Lactuca sativa
Lsat_1_v5_gn_7_30180 Lactuca sativa
Manes.15G120501 Manihot esculenta
Manes.17G068348 Manihot esculenta
Mapoly0001s0112 Marchantia polymorpha
MBI02_g07698_MAGBIO Magnolia biondii
MBI02_g14915_MAGBIO Magnolia biondii
MBI02_g17154_MAGBIO Magnolia biondii
MBI02_g39356_MAGBIO Magnolia biondii
MBI05_g41026_MAGBIO Magnolia biondii
MBI07_g19049_MAGBIO Magnolia biondii
MBI10_g21108_MAGBIO Magnolia biondii
MBI10_g22524_MAGBIO Magnolia biondii
MBI11_g29580_MAGBIO Magnolia biondii
MBI14_g01723_MAGBIO Magnolia biondii
MBI14_g16687_MAGBIO Magnolia biondii
MBI15_g14061_MAGBIO Magnolia biondii
MBI15_g20023_MAGBIO Magnolia biondii
MBI15_g22766_MAGBIO Magnolia biondii
MBI16_g40477_MAGBIO Magnolia biondii
MBI17_g25966_MAGBIO Magnolia biondii
MBI18_g14997_MAGBIO Magnolia biondii
MBI18_g18637_MAGBIO Magnolia biondii
MBI18_g18639_MAGBIO Magnolia biondii
MBI19_g43971_MAGBIO Magnolia biondii
MCO07G499 Micromonas commoda
MD05G1285300 Malus domestica
MD05G1285400 Malus domestica
MD09G1149400 Malus domestica
MD10G1263500 Malus domestica
MD17G1135800 Malus domestica
Medtr2g019720 Medicago truncatula
Medtr2g098000 Medicago truncatula
Medtr3g046320 Medicago truncatula
Medtr5g091120 Medicago truncatula
Medtr5g091135 Medicago truncatula
MELO3C002719.2 Cucumis melo
MELO3C007141.2 Cucumis melo
MELO3C026973.2 Cucumis melo
Migut.H01367 Erythranthe guttata
Migut.M00922 Erythranthe guttata
Migut.N03016 Erythranthe guttata
MSTRG.14770 Avicennia marina
MSTRG.16232 Avicennia marina
MSTRG.2409 Avicennia marina
MSTRG.7479 Avicennia marina
Nitab4.5_0000126g0050 Nicotiana tabacum
Nitab4.5_0000348g0220 Nicotiana tabacum
Nitab4.5_0001655g0060 Nicotiana tabacum
Nitab4.5_0002000g0060 Nicotiana tabacum
Nitab4.5_0002140g0040 Nicotiana tabacum
Nitab4.5_0003128g0040 Nicotiana tabacum
Nitab4.5_0005219g0100 Nicotiana tabacum
Nitab4.5_0007227g0030 Nicotiana tabacum
Nitab4.5_0007227g0040 Nicotiana tabacum
Nitab4.5_0016131g0010 Nicotiana tabacum
Nn1g05583 Nelumbo nucifera
Nn2g14426 Nelumbo nucifera
Oeu030918.2 Olea europaea
Oeu031252.2 Olea europaea
Oeu039403.1 Olea europaea
Oeu042443.1 Olea europaea
Os01g0752300 Oryza sativa ssp. japonica
Os05g0565000 Oryza sativa ssp. japonica
Peaxi162Scf00075g01928 Petunia axillaris
Peaxi162Scf00251g01119 Petunia axillaris
Peaxi162Scf00443g00612 Petunia axillaris
Peaxi162Scf01205g00170 Petunia axillaris
PGR042G2455 Punica granatum
PGR044G2609 Punica granatum
PGR142G3282 Punica granatum
PGSC0003DMG400008285 Solanum tuberosum
PGSC0003DMG400020323 Solanum tuberosum
PGSC0003DMG400026130 Solanum tuberosum
PGSC0003DMG400030153 Solanum tuberosum
Phvul.002G223200 Phaseolus vulgaris
Phvul.006G022666 Phaseolus vulgaris
Phvul.006G022732 Phaseolus vulgaris
Phvul.006G163400 Phaseolus vulgaris
Phvul.009G024800 Phaseolus vulgaris
Potri.002G057600 Populus trichocarpa
Potri.004G063300 Populus trichocarpa
Potri.004G063400 Populus trichocarpa
Potri.011G072400 Populus trichocarpa
Pp3c12_7770 Physcomitrium patens
Pp3c13_12320 Physcomitrium patens
Pp3c20_15150 Physcomitrium patens
Pp3c24_18790 Physcomitrium patens
Pp3c3_11250 Physcomitrium patens
Pp3c8_13880 Physcomitrium patens
PRCOL_00006113 Prasinoderma coloniale
Prupe.1G510600 Prunus persica
Prupe.3G177000 Prunus persica
Prupe.4G079200 Prunus persica
Psat0s4036g0080 Pisum sativum
Psat1g190080 Pisum sativum
Psat2g016960 Pisum sativum
Psat5g135560 Pisum sativum
PSO170G4126 Papaver somniferum
PSO455G0111 Papaver somniferum
PSO541G3938 Papaver somniferum
PSO541G4405 Papaver somniferum
PSO675G8951 Papaver somniferum
PSO675G9222 Papaver somniferum
QL04p069098 Quercus lobata
QL05p058786 Quercus lobata
RcHm_v2.0_Chr1g0331531 Rosa chinensis
RcHm_v2.0_Chr1g0354441 Rosa chinensis
RcHm_v2.0_Chr2g0152021 Rosa chinensis
RcHm_v2.0_Chr4g0408671 Rosa chinensis
RcHm_v2.0_Chr5g0013781 Rosa chinensis
RcHm_v2.0_Chr5g0040271 Rosa chinensis
RcHm_v2.0_Chr5g0077631 Rosa chinensis
RcHm_v2.0_Chr6g0245431 Rosa chinensis
Rhsim02G0143800 Rhododendron simsii
Rhsim02G0144300 Rhododendron simsii
Rhsim13G0194300 Rhododendron simsii
Sabra04G0042000 Salix brachista
Sabra05G0155100 Salix brachista
Sabra11G0056700 Salix brachista
Sabra11G0060100 Salix brachista
SalBow1G5323 Salvia bowleyana
SalBow6G6954 Salvia bowleyana
SalBow8G3300 Salvia bowleyana
SalBow8G5616 Salvia bowleyana
Sc05g0006360 Simmondsia chinensis
Sc17g0004970 Simmondsia chinensis
Sc24g0001870 Simmondsia chinensis
Sed0005570 Sechium edule
Sed0006426 Sechium edule
Sed0010453 Sechium edule
Sed0021223 Sechium edule
Sed0025584 Sechium edule
Sed0026704 Sechium edule
SGA_v2.0_scaffold106G30644 Striga asiatica
SGA_v2.0_scaffold19G08900 Striga asiatica
SGA_v2.0_scaffold1G00158 Striga asiatica
SGA_v2.0_scaffold25G11019 Striga asiatica
SGA_v2.0_scaffold333G48995 Striga asiatica
SGA_v2.0_scaffold51G18636 Striga asiatica
SMO367G0206 Selaginella moellendorffii
Solyc02g070640.3 Solanum lycopersicum
Solyc02g070650.2 Solanum lycopersicum
Solyc08g016180.3 Solanum lycopersicum
Solyc09g056380.1 Solanum lycopersicum
Sopen02g019720 Solanum pennellii
Sopen02g019730 Solanum pennellii
Sopen06g024090 Solanum pennellii
Sopen08g006530 Solanum pennellii
Sopen09g020560 Solanum pennellii
Sp1g25840 Schrenkiella parvula
Sp3g12870 Schrenkiella parvula
Sp4g16750 Schrenkiella parvula
TAR362G0472 Trochodendron aralioides
TAR626G1804 Trochodendron aralioides
TAR627G1010 Trochodendron aralioides
THA.LOC104812668 Tarenaya hassleriana
THA.LOC104814290 Tarenaya hassleriana
THA.LOC104815583 Tarenaya hassleriana
THA.LOC104820645 Tarenaya hassleriana
THA.LOC104822592 Tarenaya hassleriana
Thecc.01G169800 Theobroma cacao
Thecc.06G152200 Theobroma cacao
Thhalv10009933m.g Eutrema salsugineum
Thhalv10017304m.g Eutrema salsugineum
Thhalv10021546m.g Eutrema salsugineum
TPR.G10165 Trifolium pratense
TPR.G11231 Trifolium pratense
TPR.G35521 Trifolium pratense
TWI09G0685 Tripterygium wilfordii
TWI53G0711 Tripterygium wilfordii
TWI73G0858 Tripterygium wilfordii
unitig_21.g20209 Utricularia gibba
unitig_37.g12102 Utricularia gibba
unitig_744.g24546 Utricularia gibba
unitig_92.g28157 Utricularia gibba
vmacro04817 Vaccinium macrocarpon
vmacro13218 Vaccinium macrocarpon
vmacro13219 Vaccinium macrocarpon
VMungo0540G1268 Vigna mungo
VMungo0540G1606 Vigna mungo
VMungo1309G1071 Vigna mungo
Zm00001eb157400 Zea mays
Zm00001eb178210 Zea mays
Zm00001eb295950 Zea mays
Zm00001eb343830 Zea mays
Zm00001eb359780 Zea mays

User provided reference genes

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