Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p23520 Brassica napus
A06p11720 Brassica napus
A09p39920 Brassica napus
Aa31LG4G750 Aethionema arabicum
Aa31LG6G1740 Aethionema arabicum
Aa31LG7G8590 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.449 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.851 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.530 Anthoceros agrestis
Actinidia08956 Actinidia chinensis
Actinidia14758 Actinidia chinensis
Actinidia15975 Actinidia chinensis
Actinidia28642 Actinidia chinensis
Ah.03g139010 Amaranthus hybridus
Ah.12g055920 Amaranthus hybridus
AL1G27840 Arabidopsis lyrata
AL1G39210 Arabidopsis lyrata
AL1G41080 Arabidopsis lyrata
AL1G41090 Arabidopsis lyrata
AL2G40990 Arabidopsis lyrata
AL7G35110 Arabidopsis lyrata
Aqoxy3G00505 Aquilegia oxysepala
Aqoxy7G00881 Aquilegia oxysepala
Aqoxy7G03597 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.01HD59 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6Z0X2U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JL5UQ6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KUI669 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PLIZ5P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YKH51Y Arachis hypogaea
AT1G15730 Arabidopsis thaliana
AT1G26520 Arabidopsis thaliana
AT1G80480 Arabidopsis thaliana
ATR0064G045 Amborella trichopoda
ATR0680G023 Amborella trichopoda
ATR0680G116 Amborella trichopoda
ATR0767G192 Amborella trichopoda
ATR0767G240 Amborella trichopoda
ATR0829G088 Amborella trichopoda
Atru.chr1.2848 Acer truncatum
Atru.chr11.1656 Acer truncatum
Atru.chr6.1580 Acer truncatum
AUR62003116 Chenopodium quinoa
AUR62007403 Chenopodium quinoa
AUR62007932 Chenopodium quinoa
AUR62011482 Chenopodium quinoa
AUR62016294 Chenopodium quinoa
AUR62027329 Chenopodium quinoa
BcaB05g25265 Brassica carinata
BcaC03g15962 Brassica carinata
BcaC05g25515 Brassica carinata
BcaC05g25645 Brassica carinata
BcaC05g25646 Brassica carinata
BolC2t09738H Brassica oleracea
BolC5t30121H Brassica oleracea
BolC5t31184H Brassica oleracea
BraA02t07345Z Brassica rapa
BraA06t24344Z Brassica rapa
BraA09t39491Z Brassica rapa
C02p37280 Brassica napus
C05p13860 Brassica napus
C05p24500 Brassica napus
CAN.G407.24 Capsicum annuum
CAN.G616.10 Capsicum annuum
CAN.G773.6 Capsicum annuum
CAN.G899.4 Capsicum annuum
CANSAT11G1306 Cannabis sativa
CANSAT21G1557 Cannabis sativa
CANSAT64G2351 Cannabis sativa
CARHR016210 Cardamine hirsuta
CARHR025450 Cardamine hirsuta
CARHR074000 Cardamine hirsuta
CARHR074100 Cardamine hirsuta
Carub.0001s1550 Capsella rubella
Carub.0001s2451 Capsella rubella
Carub.0002s2708 Capsella rubella
Carub.0007s2212 Capsella rubella
Ca_04912_v3 Cicer arietinum L.
Ca_11303_v3 Cicer arietinum L.
Ca_22489_v3 Cicer arietinum L.
Ca_28782_v3 Cicer arietinum L.
CBR_g36748 Chara braunii
CBR_g51046 Chara braunii
CBR_g5605 Chara braunii
Cc04_g04640 Coffea canephora
Cc04_g04650 Coffea canephora
Cc08_g04290 Coffea canephora
Cc08_g08070 Coffea canephora
Cc11_g12160 Coffea canephora
CDE02G1685 Ceratophyllum demersum
CDE06G1779 Ceratophyllum demersum
CDE10G0216 Ceratophyllum demersum
Cfa001936 Carpinus fangiana
Cfa008888 Carpinus fangiana
Cfa012562 Carpinus fangiana
Cfa021611 Carpinus fangiana
Cfa024817 Carpinus fangiana
Ciclev10003116m.g Citrus clementina
Ciclev10025584m.g Citrus clementina
Ciclev10027557m.g Citrus clementina
Ciclev10031871m.g Citrus clementina
CiPaw.02G158500 Carya illinoinensis
CiPaw.05G126300 Carya illinoinensis
CiPaw.12G070400 Carya illinoinensis
ClCG07G012280 Citrullus lanatus
ClCG10G001130 Citrullus lanatus
COL.COLO4_11856 Corchorus olitorius
COL.COLO4_16881 Corchorus olitorius
Cpa.g.sc1.111 Carica papaya
Cpa.g.sc10.141 Carica papaya
Cpa.g.sc10.144 Carica papaya
Cpa.g.sc133.10 Carica papaya
Cpa.g.sc133.9 Carica papaya
Cre01.g052000 Chlamydomonas reinhardtii
Cre02.g118400 Chlamydomonas reinhardtii
Cre03.g175700 Chlamydomonas reinhardtii
Cre05.g234652 Chlamydomonas reinhardtii
Cre07.g329250 Chlamydomonas reinhardtii
Cre09.g406983 Chlamydomonas reinhardtii
Cre09.g407016 Chlamydomonas reinhardtii
Cre12.g536900 Chlamydomonas reinhardtii
Cre14.g613200 Chlamydomonas reinhardtii
Cre14.g630871 Chlamydomonas reinhardtii
Cre16.g658000 Chlamydomonas reinhardtii
Cre16.g684650 Chlamydomonas reinhardtii
Cre16.g685000 Chlamydomonas reinhardtii
Cre16.g685050 Chlamydomonas reinhardtii
Cre16.g685100 Chlamydomonas reinhardtii
Cre16.g692901 Chlamydomonas reinhardtii
CsaV3_3G001150 Cucumis sativus L.
CsaV3_4G001870 Cucumis sativus L.
CsaV3_6G032520 Cucumis sativus L.
CsaV3_6G033600 Cucumis sativus L.
CSS0013309 Camellia sinensis var. sinensis
CSS0014813 Camellia sinensis var. sinensis
CSS0031190 Camellia sinensis var. sinensis
DCAR_021356 Daucus carota
DCAR_024946 Daucus carota
DCAR_027462 Daucus carota
Dinv15839 Davidia involucrata
Dinv30636 Davidia involucrata
Dinv38143 Davidia involucrata
Duzib068G0256 Durio zibethinus
Duzib192G0707 Durio zibethinus
Duzib235G1216 Durio zibethinus
Duzib251G0509 Durio zibethinus
Duzib268G1720 Durio zibethinus
ECA233G1705 Erigeron canadensis
ECA246G4085 Erigeron canadensis
EL10Ac5g11939 Beta vulgaris
EL10Ac6g14990 Beta vulgaris
EL10Ac9g21868 Beta vulgaris
Eucgr.B03163 Eucalyptus grandis
Eucgr.E01256 Eucalyptus grandis
Eucgr.F03922 Eucalyptus grandis
FAN02G4421 Fragaria x ananassa
FAN05G4470 Fragaria x ananassa
FAN07G0355 Fragaria x ananassa
FAN08G0096 Fragaria x ananassa
FAN09G1366 Fragaria x ananassa
FAN12G1689 Fragaria x ananassa
FAN13G3249 Fragaria x ananassa
FAN14G4948 Fragaria x ananassa
FvH4_4g30300 Fragaria vesca
FvH4_5g23620 Fragaria vesca
FvH4_6g29200 Fragaria vesca
Glyma.01G057400 Glycine max
Glyma.02G115500 Glycine max
Glyma.10G291200 Glycine max
Glyma.16G103700 Glycine max
Glyma.16G103800 Glycine max
Glyma.20G240400 Glycine max
Gohir.A06G115100 Gossypium hirsutum
Gohir.A08G151800 Gossypium hirsutum
Gohir.A13G081500 Gossypium hirsutum
Gohir.D06G119900 Gossypium hirsutum
Gohir.D08G172900 Gossypium hirsutum
Gohir.D13G081200 Gossypium hirsutum
Gorai.004G180100 Gossypium raimondii
Gorai.010G137900 Gossypium raimondii
Gorai.013G093200 Gossypium raimondii
GSVIVG01012190001 Vitis vinifera
GSVIVG01012316001 Vitis vinifera
GSVIVG01017468001 Vitis vinifera
GSVIVG01017471001 Vitis vinifera
GSVIVG01022647001 Vitis vinifera
HanXRQChr12g0363011 Helianthus annuus
HanXRQChr16g0500271 Helianthus annuus
HanXRQChr17g0537671 Helianthus annuus
Haze_08100 Corylus avellana
Haze_11921 Corylus avellana
Haze_16602 Corylus avellana
Haze_16604 Corylus avellana
Haze_27435 Corylus avellana
Hma1.2p1_0357F.1_g134553 Hydrangea macrophylla
Hma1.2p1_0357F.1_g134556 Hydrangea macrophylla
Hma1.2p1_0357F.1_g134560 Hydrangea macrophylla
Hma1.2p1_0357F.1_g134578 Hydrangea macrophylla
Hma1.2p1_0357F.1_g134580 Hydrangea macrophylla
Hma1.2p1_0357F.1_g134590 Hydrangea macrophylla
Hma1.2p1_0357F.1_g134593 Hydrangea macrophylla
Hma1.2p1_0357F.1_g134596 Hydrangea macrophylla
Hma1.2p1_0357F.1_g134606 Hydrangea macrophylla
Hma1.2p1_0599F.1_g187045 Hydrangea macrophylla
Hma1.2p1_0599F.1_g187050 Hydrangea macrophylla
Hma1.2p1_0979F.1_g243560 Hydrangea macrophylla
HPP92_007744 Vanilla planifolia
HPP92_007824 Vanilla planifolia
HPP92_008831 Vanilla planifolia
HPP92_015996 Vanilla planifolia
HPP92_022055 Vanilla planifolia
Hund06545 Selenicereus undatus
Hund14336 Selenicereus undatus
Hund25187 Selenicereus undatus
Lalb_Chr02g0143991 Lupinus albus
Lalb_Chr05g0228301 Lupinus albus
Lalb_Chr06g0164211 Lupinus albus
Lalb_Chr17g0341141 Lupinus albus
Lj2g0027225 Lotus japonicus
Lj4g0007616 Lotus japonicus
Lj5g0010574 Lotus japonicus
Lj6A780T51 Lonicera japonica
Lj8A324T104 Lonicera japonica
Lj9A497G70 Lonicera japonica
Lju2073C0G1 Lonicera japonica
Lsat_1_v5_gn_3_20881 Lactuca sativa
Lsat_1_v5_gn_3_56300 Lactuca sativa
Lsat_1_v5_gn_4_88141 Lactuca sativa
Lsat_1_v5_gn_8_47901 Lactuca sativa
Manes.01G028800 Manihot esculenta
Manes.04G108800 Manihot esculenta
Manes.15G185200 Manihot esculenta
Mapoly0001s0517 Marchantia polymorpha
Mapoly0005s0038 Marchantia polymorpha
Mapoly0041s0052 Marchantia polymorpha
MBI04_g21138_MAGBIO Magnolia biondii
MBI10_g21117_MAGBIO Magnolia biondii
MBI10_g27403_MAGBIO Magnolia biondii
MBI15_g17558_MAGBIO Magnolia biondii
MBI16_g06306_MAGBIO Magnolia biondii
MCO01G608 Micromonas commoda
MCO07G284 Micromonas commoda
MCO09G553 Micromonas commoda
MCO11G901 Micromonas commoda
MCO13G562 Micromonas commoda
MCO14G140 Micromonas commoda
MCO15G136 Micromonas commoda
MCO15G237 Micromonas commoda
MCO15G294 Micromonas commoda
MCO15G583 Micromonas commoda
MCO16G673 Micromonas commoda
MD13G1064000 Malus domestica
MD13G1260600 Malus domestica
MD15G1349400 Malus domestica
MD16G1062700 Malus domestica
MD17G1002200 Malus domestica
MD17G1216800 Malus domestica
Medtr1g115505 Medicago truncatula
Medtr5g021440 Medicago truncatula
Medtr5g044050 Medicago truncatula
Medtr8g071110 Medicago truncatula
MELO3C011429.2 Cucumis melo
MELO3C013805.2 Cucumis melo
MELO3C017847.2 Cucumis melo
Migut.E00053 Erythranthe guttata
Migut.E01336 Erythranthe guttata
Migut.H01085 Erythranthe guttata
Migut.I00740 Erythranthe guttata
MSTRG.13445 Avicennia marina
MSTRG.1782 Avicennia marina
MSTRG.22763 Avicennia marina
Nitab4.5_0000543g0030 Nicotiana tabacum
Nitab4.5_0002322g0030 Nicotiana tabacum
Nitab4.5_0002362g0080 Nicotiana tabacum
Nitab4.5_0002735g0050 Nicotiana tabacum
Nitab4.5_0004013g0030 Nicotiana tabacum
Nitab4.5_0008450g0010 Nicotiana tabacum
Nn1g02010 Nelumbo nucifera
Nn2g12185 Nelumbo nucifera
Nn8g39644 Nelumbo nucifera
Oeu004575.1 Olea europaea
Oeu018796.1 Olea europaea
Oeu042221.1 Olea europaea
Os02g0800000 Oryza sativa ssp. japonica
Os04g0599700 Oryza sativa ssp. japonica
Os07g0598900 Oryza sativa ssp. japonica
Peaxi162Scf00314g00229 Petunia axillaris
Peaxi162Scf00332g00125 Petunia axillaris
Peaxi162Scf00408g00320 Petunia axillaris
PGR042G1637 Punica granatum
PGR102G0869 Punica granatum
PGR102G1096 Punica granatum
PGSC0003DMG400009303 Solanum tuberosum
PGSC0003DMG400014140 Solanum tuberosum
PGSC0003DMG400028379 Solanum tuberosum
Phvul.003G043500 Phaseolus vulgaris
Phvul.003G273000 Phaseolus vulgaris
Phvul.007G009700 Phaseolus vulgaris
Potri.001G133500 Populus trichocarpa
Potri.001G201400 Populus trichocarpa
Potri.003G030100 Populus trichocarpa
Potri.008G094100 Populus trichocarpa
Pp3c11_22690 Physcomitrium patens
Pp3c11_23140 Physcomitrium patens
Pp3c2_29130 Physcomitrium patens
Pp3c6_21030 Physcomitrium patens
PRCOL_00000935 Prasinoderma coloniale
PRCOL_00001265 Prasinoderma coloniale
PRCOL_00001944 Prasinoderma coloniale
PRCOL_00002343 Prasinoderma coloniale
PRCOL_00002401 Prasinoderma coloniale
PRCOL_00004300 Prasinoderma coloniale
PRCOL_00006098 Prasinoderma coloniale
PRCOL_00006442 Prasinoderma coloniale
PRCOL_00007067 Prasinoderma coloniale
Prupe.1G284700 Prunus persica
Prupe.3G092800 Prunus persica
Prupe.5G023800 Prunus persica
Psat2g129880 Pisum sativum
Psat4g110760 Pisum sativum
Psat6g237480 Pisum sativum
PSO017G0483 Papaver somniferum
PSO017G6632 Papaver somniferum
PSO063G1245 Papaver somniferum
PSO478G5285 Papaver somniferum
PSO675G9242 Papaver somniferum
QL03p071314 Quercus lobata
QL05p032585 Quercus lobata
QL12p000493 Quercus lobata
RcHm_v2.0_Chr2g0134411 Rosa chinensis
RcHm_v2.0_Chr4g0438581 Rosa chinensis
RcHm_v2.0_Chr7g0212921 Rosa chinensis
Rhsim07G0136800 Rhododendron simsii
Rhsim12G0135500 Rhododendron simsii
Rhsim12G0189400 Rhododendron simsii
Sabra01G0103000 Salix brachista
Sabra03G0016600 Salix brachista
Sabra08G0070600 Salix brachista
Sabra10G0121700 Salix brachista
SalBow2G2601 Salvia bowleyana
SalBow6G1643 Salvia bowleyana
SalBow8G3231 Salvia bowleyana
Sc10g0008150 Simmondsia chinensis
Sc10g0008790 Simmondsia chinensis
Sc14g0008000 Simmondsia chinensis
Sc22g0001940 Simmondsia chinensis
Sed0005576 Sechium edule
Sed0006514 Sechium edule
Sed0026189 Sechium edule
SEGI_13489 Sequoiadendron giganteum
SEGI_15702 Sequoiadendron giganteum
SEGI_23192 Sequoiadendron giganteum
SEGI_26508 Sequoiadendron giganteum
SEGI_29419 Sequoiadendron giganteum
SEGI_34738 Sequoiadendron giganteum
SEGI_37025 Sequoiadendron giganteum
SEGI_41114 Sequoiadendron giganteum
SEGI_41141 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31374 Striga asiatica
SGA_v2.0_scaffold287G47164 Striga asiatica
SGA_v2.0_scaffold37G14748 Striga asiatica
SMO171G0052 Selaginella moellendorffii
SMO356G0335 Selaginella moellendorffii
Solyc03g117430.3 Solanum lycopersicum
Solyc05g012460.4 Solanum lycopersicum
Solyc08g076020.4 Solanum lycopersicum
Sopen03g036320 Solanum pennellii
Sopen05g007280 Solanum pennellii
Sopen08g024660 Solanum pennellii
Sp1g14020 Schrenkiella parvula
Sp1g22240 Schrenkiella parvula
Sp5g35320 Schrenkiella parvula
TAR203G0002 Trochodendron aralioides
TAR374G0575 Trochodendron aralioides
TAR625G0520 Trochodendron aralioides
TAR629G2424 Trochodendron aralioides
TAR677G0003 Trochodendron aralioides
THA.LOC104798457 Tarenaya hassleriana
THA.LOC104800364 Tarenaya hassleriana
THA.LOC104805037 Tarenaya hassleriana
THA.LOC104813575 Tarenaya hassleriana
THA.LOC104822015 Tarenaya hassleriana
Thecc.02G333200 Theobroma cacao
Thecc.03G314600 Theobroma cacao
Thecc.06G032900 Theobroma cacao
Thhalv10007454m.g Eutrema salsugineum
Thhalv10007622m.g Eutrema salsugineum
Thhalv10018560m.g Eutrema salsugineum
TPR.G14007 Trifolium pratense
TPR.G24431 Trifolium pratense
TPR.G31315 Trifolium pratense
TPR.G36005 Trifolium pratense
TWI60G1100 Tripterygium wilfordii
TWI75G0004 Tripterygium wilfordii
TWI79G1059 Tripterygium wilfordii
unitig_0.g1111 Utricularia gibba
unitig_27.g25218 Utricularia gibba
unitig_52.g17263 Utricularia gibba
vmacro14219 Vaccinium macrocarpon
vmacro16379 Vaccinium macrocarpon
vmacro16875 Vaccinium macrocarpon
VMungo0251G3278 Vigna mungo
VMungo0720G1904 Vigna mungo
VMungo1215G1701 Vigna mungo
Zm00001eb258070 Zea mays
Zm00001eb326720 Zea mays

User provided reference genes

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