Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p37150 Brassica napus
A05p37790 Brassica napus
A10p18480 Brassica napus
A10p30260 Brassica napus
Aa31LG11G7150 Aethionema arabicum
Aa31LG1G13180 Aethionema arabicum
Aa31LG3G4940 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5709 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.385 Anthoceros agrestis
Actinidia03911 Actinidia chinensis
Actinidia03912 Actinidia chinensis
Actinidia03913 Actinidia chinensis
Actinidia04015 Actinidia chinensis
Actinidia05401 Actinidia chinensis
Actinidia05402 Actinidia chinensis
Actinidia07255 Actinidia chinensis
Actinidia24226 Actinidia chinensis
Actinidia25114 Actinidia chinensis
Actinidia27757 Actinidia chinensis
Actinidia27758 Actinidia chinensis
Actinidia31259 Actinidia chinensis
Ah.02g111800 Amaranthus hybridus
Ah.08g223510 Amaranthus hybridus
AL3G23090 Arabidopsis lyrata
AL6G16150 Arabidopsis lyrata
AL6G16190 Arabidopsis lyrata
AL6G33370 Arabidopsis lyrata
Aqoxy2G01060 Aquilegia oxysepala
Aqoxy4G02724 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2IR9C4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8Z285S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ESQ7GJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q5DPKW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VDQ48T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XHST8G Arachis hypogaea
AT3G11540 Arabidopsis thaliana
AT5G06180 Arabidopsis thaliana
AT5G22350 Arabidopsis thaliana
ATR0820G233 Amborella trichopoda
ATR0820G255 Amborella trichopoda
Atru.chr3.3176 Acer truncatum
Atru.chr8.1443 Acer truncatum
Atru.chr8.1448 Acer truncatum
AUR62006225 Chenopodium quinoa
AUR62006468 Chenopodium quinoa
AUR62029824 Chenopodium quinoa
AUR62029826 Chenopodium quinoa
AUR62036988 Chenopodium quinoa
BcaB04g18647 Brassica carinata
BcaB05g22732 Brassica carinata
BcaB05g22779 Brassica carinata
BcaB06g25610 Brassica carinata
BcaB08g36438 Brassica carinata
BcaC01g04107 Brassica carinata
BcaC03g13876 Brassica carinata
BcaC04g19567 Brassica carinata
BcaC05g29357 Brassica carinata
BcaC06g32328 Brassica carinata
BcaC06g32588 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p00720 Brassica napus
BolC2t07151H Brassica oleracea
BolC3t16760H Brassica oleracea
BolC5t34308H Brassica oleracea
BolC9t58298H Brassica oleracea
BolC9t59823H Brassica oleracea
BraA02t05653Z Brassica rapa
BraA03t12875Z Brassica rapa
BraA05t22574Z Brassica rapa
BraA10t43928Z Brassica rapa
BraA10t45064Z Brassica rapa
C02p10830 Brassica napus
C03p45000 Brassica napus
C05p56410 Brassica napus
C09p54230 Brassica napus
C09p54300 Brassica napus
C09p70670 Brassica napus
CAN.G397.87 Capsicum annuum
CAN.G397.89 Capsicum annuum
CAN.G745.8 Capsicum annuum
CANSAT54G1061 Cannabis sativa
CANSAT64G1174 Cannabis sativa
CANSAT64G2255 Cannabis sativa
CARHR086090 Cardamine hirsuta
CARHR191190 Cardamine hirsuta
CARHR206890 Cardamine hirsuta
CARHR207190 Cardamine hirsuta
Carub.0003s1086 Capsella rubella
Carub.0006s0506 Capsella rubella
Carub.0006s2009 Capsella rubella
Ca_09025_v3 Cicer arietinum L.
Ca_19441_v3 Cicer arietinum L.
Ca_24224_v3 Cicer arietinum L.
CBR_g30524 Chara braunii
CBR_g33922 Chara braunii
Cc01_g08870 Coffea canephora
Cc06_g06160 Coffea canephora
Cc06_g06180 Coffea canephora
CDE06G2666 Ceratophyllum demersum
CDE07G1160 Ceratophyllum demersum
CDE11G0510 Ceratophyllum demersum
Cfa009991 Carpinus fangiana
Cfa016647 Carpinus fangiana
Ciclev10011021m.g Citrus clementina
Ciclev10013428m.g Citrus clementina
Ciclev10028505m.g Citrus clementina
CiPaw.09G017100 Carya illinoinensis
CiPaw.09G017300 Carya illinoinensis
CiPaw.10G012400 Carya illinoinensis
CiPaw.14G098300 Carya illinoinensis
ClCG01G011870 Citrullus lanatus
ClCG04G010210 Citrullus lanatus
ClCG10G018720 Citrullus lanatus
COL.COLO4_29670 Corchorus olitorius
COL.COLO4_29672 Corchorus olitorius
COL.COLO4_34012 Corchorus olitorius
Cpa.g.sc104.92 Carica papaya
Cpa.g.sc104.94 Carica papaya
Cpa.g.sc104.95 Carica papaya
Cpa.g.sc195.17 Carica papaya
Cre12.g552851 Chlamydomonas reinhardtii
CsaV3_1G015020 Cucumis sativus L.
CsaV3_1G015930 Cucumis sativus L.
CsaV3_1G015940 Cucumis sativus L.
CsaV3_3G037510 Cucumis sativus L.
CsaV3_6G040850 Cucumis sativus L.
CSS0000402 Camellia sinensis var. sinensis
CSS0001627 Camellia sinensis var. sinensis
CSS0014933 Camellia sinensis var. sinensis
CSS0015105 Camellia sinensis var. sinensis
CSS0019098 Camellia sinensis var. sinensis
CSS0031917 Camellia sinensis var. sinensis
CSS0036487 Camellia sinensis var. sinensis
CSS0037903 Camellia sinensis var. sinensis
CSS0041423 Camellia sinensis var. sinensis
DCAR_008674 Daucus carota
DCAR_010333 Daucus carota
DCAR_010334 Daucus carota
DCAR_012211 Daucus carota
DCAR_012896 Daucus carota
DCAR_013412 Daucus carota
DCAR_019223 Daucus carota
Dinv08940 Davidia involucrata
Dinv21169 Davidia involucrata
Dinv22822 Davidia involucrata
Dinv31718 Davidia involucrata
Dinv31720 Davidia involucrata
Dinv31721 Davidia involucrata
Duzib093G1606 Durio zibethinus
Duzib093G2141 Durio zibethinus
Duzib106G1253 Durio zibethinus
Duzib150G1636 Durio zibethinus
Duzib168G0861 Durio zibethinus
Duzib170G1075 Durio zibethinus
ECA236G3012 Erigeron canadensis
ECA238G0305 Erigeron canadensis
ECA238G2928 Erigeron canadensis
ECA238G2976 Erigeron canadensis
EL10Ac7g16332 Beta vulgaris
EL10Ac7g16875 Beta vulgaris
Eucgr.B03829 Eucalyptus grandis
Eucgr.K02568 Eucalyptus grandis
Eucgr.K02570 Eucalyptus grandis
FAN02G4308 Fragaria x ananassa
FAN02G4309 Fragaria x ananassa
FAN05G0475 Fragaria x ananassa
FAN05G1606 Fragaria x ananassa
FAN05G2759 Fragaria x ananassa
FAN05G3343 Fragaria x ananassa
FAN09G1626 Fragaria x ananassa
FAN09G3352 Fragaria x ananassa
FAN11G0115 Fragaria x ananassa
FAN14G1517 Fragaria x ananassa
FAN14G2159 Fragaria x ananassa
FAN16G2794 Fragaria x ananassa
FAN21G2859 Fragaria x ananassa
FAN25G0112 Fragaria x ananassa
FvH4_3g25550 Fragaria vesca
FvH4_6g19470 Fragaria vesca
FvH4_6g19490 Fragaria vesca
Glyma.02G201300 Glycine max
Glyma.03G198100 Glycine max
Glyma.03G198300 Glycine max
Glyma.04G115600 Glycine max
Glyma.09G113500 Glycine max
Glyma.10G075300 Glycine max
Glyma.11G181700 Glycine max
Glyma.12G091500 Glycine max
Glyma.12G186400 Glycine max
Glyma.13G315100 Glycine max
Glyma.19G196000 Glycine max
Glyma.19G196202 Glycine max
Gohir.A01G204700 Gossypium hirsutum
Gohir.A04G059300 Gossypium hirsutum
Gohir.A07G110900 Gossypium hirsutum
Gohir.A11G318700 Gossypium hirsutum
Gohir.D01G194100 Gossypium hirsutum
Gohir.D04G084400 Gossypium hirsutum
Gohir.D07G114700 Gossypium hirsutum
Gohir.D11G337900 Gossypium hirsutum
Gorai.001G122900 Gossypium raimondii
Gorai.002G238200 Gossypium raimondii
Gorai.007G367900 Gossypium raimondii
Gorai.009G399700 Gossypium raimondii
GSVIVG01033891001 Vitis vinifera
GSVIVG01033893001 Vitis vinifera
GSVIVG01036086001 Vitis vinifera
HanXRQChr05g0133061 Helianthus annuus
HanXRQChr06g0176131 Helianthus annuus
HanXRQChr09g0266141 Helianthus annuus
HanXRQChr14g0438011 Helianthus annuus
HanXRQChr15g0491621 Helianthus annuus
HanXRQChr16g0516951 Helianthus annuus
Haze_19651 Corylus avellana
Haze_19653 Corylus avellana
Haze_23352 Corylus avellana
Hma1.2p1_0587F.1_g184000 Hydrangea macrophylla
Hma1.2p1_0820F.1_g224050 Hydrangea macrophylla
HPP92_001970 Vanilla planifolia
HPP92_001984 Vanilla planifolia
HPP92_023061 Vanilla planifolia
Hund18771 Selenicereus undatus
Lalb_Chr03g0028201 Lupinus albus
Lalb_Chr20g0111581 Lupinus albus
Lalb_Chr20g0111601 Lupinus albus
Lalb_Chr24g0393521 Lupinus albus
Lalb_Chr25g0288211 Lupinus albus
Lj1A257T27 Lonicera japonica
Lj1g0011076 Lotus japonicus
Lj3A1009G52 Lonicera japonica
Lj3A1009T56 Lonicera japonica
Lj3g0014791 Lotus japonicus
Lj5g0025907 Lotus japonicus
Lj7A625T74 Lonicera japonica
Lsat_1_v5_gn_2_56421 Lactuca sativa
Lsat_1_v5_gn_2_56441 Lactuca sativa
Lsat_1_v5_gn_2_59301 Lactuca sativa
Lsat_1_v5_gn_4_156600 Lactuca sativa
Lsat_1_v5_gn_8_74960 Lactuca sativa
Manes.08G028400 Manihot esculenta
Manes.09G052051 Manihot esculenta
Manes.09G052300 Manihot esculenta
Manes.11G163800 Manihot esculenta
Mapoly0020s0107 Marchantia polymorpha
Mapoly0038s0050 Marchantia polymorpha
MBI05_g03435_MAGBIO Magnolia biondii
MBI05_g32168_MAGBIO Magnolia biondii
MBI05_g32169_MAGBIO Magnolia biondii
MCO11G381 Micromonas commoda
MCO13G096 Micromonas commoda
MD03G1149300 Malus domestica
MD11G1168100 Malus domestica
MD12G1030800 Malus domestica
MD12G1031000 Malus domestica
MD14G1031300 Malus domestica
MD14G1031500 Malus domestica
Medtr1g059610 Medicago truncatula
Medtr4g052540 Medicago truncatula
Medtr7g105230 Medicago truncatula
MELO3C004681.2 Cucumis melo
MELO3C009494.2 Cucumis melo
MELO3C024563.2 Cucumis melo
Migut.J01002 Erythranthe guttata
Migut.L01802 Erythranthe guttata
Migut.N02477 Erythranthe guttata
MSTRG.12376 Avicennia marina
MSTRG.19276 Avicennia marina
Nitab4.5_0000573g0080 Nicotiana tabacum
Nitab4.5_0000573g0160 Nicotiana tabacum
Nitab4.5_0000731g0050 Nicotiana tabacum
Nitab4.5_0008177g0010 Nicotiana tabacum
Nn6g34810 Nelumbo nucifera
Nn6g34815 Nelumbo nucifera
Oeu007200.1 Olea europaea
Oeu031469.1 Olea europaea
Oeu035572.1 Olea europaea
Oeu047837.1 Olea europaea
Oeu047838.2 Olea europaea
Os02g0535700 Oryza sativa ssp. japonica
Os04g0414000 Oryza sativa ssp. japonica
Os08g0559300 Oryza sativa ssp. japonica
Peaxi162Scf00069g00219 Petunia axillaris
Peaxi162Scf00069g00320 Petunia axillaris
Peaxi162Scf00224g00119 Petunia axillaris
PGR102G2335 Punica granatum
PGR142G1086 Punica granatum
PGR142G3251 Punica granatum
PGSC0003DMG400008939 Solanum tuberosum
PGSC0003DMG400026349 Solanum tuberosum
PGSC0003DMG401008856 Solanum tuberosum
PGSC0003DMG402008856 Solanum tuberosum
Phvul.001G192300 Phaseolus vulgaris
Phvul.001G192500 Phaseolus vulgaris
Phvul.005G122300 Phaseolus vulgaris
Phvul.007G153100 Phaseolus vulgaris
Phvul.011G095900 Phaseolus vulgaris
Potri.004G197000 Populus trichocarpa
Potri.006G208900 Populus trichocarpa
Potri.009G159900 Populus trichocarpa
Potri.016G075500 Populus trichocarpa
Potri.016G075700 Populus trichocarpa
Pp3c1_2450 Physcomitrium patens
Pp3c1_2460 Physcomitrium patens
Pp3c20_13230 Physcomitrium patens
Pp3c23_3410 Physcomitrium patens
Pp3c2_30810 Physcomitrium patens
Prupe.6G135200 Prunus persica
Prupe.7G101400 Prunus persica
Prupe.7G101600 Prunus persica
Psat0s1824g0040 Pisum sativum
Psat0ss5705g0120 Pisum sativum
Psat2g117440 Pisum sativum
Psat3g031480 Pisum sativum
Psat3g108920 Pisum sativum
Psat6g080760 Pisum sativum
Psat7g142320 Pisum sativum
PSO017G6268 Papaver somniferum
PSO339G4154 Papaver somniferum
PSO339G4265 Papaver somniferum
PSO384G0942 Papaver somniferum
PSO478G0867 Papaver somniferum
PSO801G0143 Papaver somniferum
QL01p011896 Quercus lobata
QL07p038133 Quercus lobata
QL07p038153 Quercus lobata
RcHm_v2.0_Chr3g0474801 Rosa chinensis
RcHm_v2.0_Chr3g0474821 Rosa chinensis
RcHm_v2.0_Chr5g0046451 Rosa chinensis
RcHm_v2.0_Chr5g0046461 Rosa chinensis
RcHm_v2.0_Chr5g0046541 Rosa chinensis
Rhsim02G0146800 Rhododendron simsii
Rhsim02G0146900 Rhododendron simsii
Rhsim03G0070000 Rhododendron simsii
Rhsim13G0113300 Rhododendron simsii
RhsimUnG0187400 Rhododendron simsii
Sabra06G0160700 Salix brachista
Sabra09G0125100 Salix brachista
Sabra16G0078000 Salix brachista
Sabra16G0078200 Salix brachista
Sabra16G0080900 Salix brachista
Sc20g0006410 Simmondsia chinensis
Sc21g0006990 Simmondsia chinensis
Sed0000974 Sechium edule
Sed0004798 Sechium edule
Sed0010659 Sechium edule
SEGI_01931 Sequoiadendron giganteum
SEGI_06630 Sequoiadendron giganteum
SEGI_37149 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05236 Striga asiatica
SGA_v2.0_scaffold13G06695 Striga asiatica
SGA_v2.0_scaffold31G12893 Striga asiatica
SGA_v2.0_scaffold35G14039 Striga asiatica
SHI12376 Sapria himalayana
SMO196G0287 Selaginella moellendorffii
SMO334G0063 Selaginella moellendorffii
Solyc09g010180.3 Solanum lycopersicum
Solyc09g010320.3 Solanum lycopersicum
Solyc11g068650.2 Solanum lycopersicum
Sopen09g004920 Solanum pennellii
Sopen09g005040 Solanum pennellii
Sopen09g005050 Solanum pennellii
Sopen11g027370 Solanum pennellii
Sp3g09780 Schrenkiella parvula
Sp6g22890 Schrenkiella parvula
Sp6g36700 Schrenkiella parvula
TAR369G0994 Trochodendron aralioides
TAR623G0898 Trochodendron aralioides
TAR623G1089 Trochodendron aralioides
THA.LOC104809967 Tarenaya hassleriana
THA.LOC104810924 Tarenaya hassleriana
THA.LOC104816601 Tarenaya hassleriana
THA.LOC104816602 Tarenaya hassleriana
Thecc.05G095300 Theobroma cacao
Thecc.05G095600 Theobroma cacao
Thecc.09G279400 Theobroma cacao
Thhalv10013630m.g Eutrema salsugineum
Thhalv10013667m.g Eutrema salsugineum
Thhalv10020017m.g Eutrema salsugineum
TPR.G14248 Trifolium pratense
TPR.G14249 Trifolium pratense
TPR.G14787 Trifolium pratense
TPR.G15433 Trifolium pratense
TPR.G17207 Trifolium pratense
TPR.G19276 Trifolium pratense
TPR.G19283 Trifolium pratense
TPR.G22654 Trifolium pratense
TPR.G23345 Trifolium pratense
TPR.G28039 Trifolium pratense
TPR.G32025 Trifolium pratense
TPR.G5707 Trifolium pratense
TPR.G8632 Trifolium pratense
TWI74G0547 Tripterygium wilfordii
TWI75G0591 Tripterygium wilfordii
TWI77G0440 Tripterygium wilfordii
unitig_578.g16016 Utricularia gibba
unitig_744.g24703 Utricularia gibba
unitig_8.g2975 Utricularia gibba
vmacro03326 Vaccinium macrocarpon
vmacro07436 Vaccinium macrocarpon
vmacro08862 Vaccinium macrocarpon
vmacro08863 Vaccinium macrocarpon
vmacro08864 Vaccinium macrocarpon
vmacro16017 Vaccinium macrocarpon
vmacro23204 Vaccinium macrocarpon
vmacro23207 Vaccinium macrocarpon
vmacro23376 Vaccinium macrocarpon
VMungo1127G1610 Vigna mungo
VMungo1383G0961 Vigna mungo
VMungo1383G1943 Vigna mungo
Zm00001eb039370 Zea mays
Zm00001eb181500 Zea mays

User provided reference genes

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