Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p15560 Brassica napus
A02p41200 Brassica napus
A03p03610 Brassica napus
A07p35410 Brassica napus
A10p28540 Brassica napus
Aa31LG11G2490 Aethionema arabicum
Aa31LG2G3740 Aethionema arabicum
Aa31LG3G18410 Aethionema arabicum
Aa31sc93G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3873 Anthoceros agrestis
Actinidia04791 Actinidia chinensis
Actinidia10438 Actinidia chinensis
Actinidia17610 Actinidia chinensis
Actinidia19903 Actinidia chinensis
Actinidia26274 Actinidia chinensis
Actinidia31927 Actinidia chinensis
Ah.02g126640 Amaranthus hybridus
Ah.10g038230 Amaranthus hybridus
Ah.11g047380 Amaranthus hybridus
Ah.16g100970 Amaranthus hybridus
Ah.16g100980 Amaranthus hybridus
AL2G28060 Arabidopsis lyrata
AL6G18510 Arabidopsis lyrata
AL7G51570 Arabidopsis lyrata
Aqoxy3G00556 Aquilegia oxysepala
Aqoxy3G03756 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3TU9DB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7WY41H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A7SJM3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A8XWCU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M6IDP9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N2H9FB Arachis hypogaea
AT1G69010 Arabidopsis thaliana
AT5G08130 Arabidopsis thaliana
AT5G38860 Arabidopsis thaliana
ATR0691G058 Amborella trichopoda
Atru.chr11.1550 Acer truncatum
Atru.chr8.617 Acer truncatum
Atru.chr9.602 Acer truncatum
AUR62003052 Chenopodium quinoa
AUR62007865 Chenopodium quinoa
AUR62009472 Chenopodium quinoa
AUR62023150 Chenopodium quinoa
AUR62032143 Chenopodium quinoa
AUR62034671 Chenopodium quinoa
AUR62034672 Chenopodium quinoa
AUR62034673 Chenopodium quinoa
AUR62034677 Chenopodium quinoa
AUR62039664 Chenopodium quinoa
AUR62043179 Chenopodium quinoa
AUR62043180 Chenopodium quinoa
BcaB01g05631 Brassica carinata
BcaB01g05677 Brassica carinata
BcaB03g15869 Brassica carinata
BcaB07g29872 Brassica carinata
BcaB08g37284 Brassica carinata
BcaC03g15025 Brassica carinata
BcaC03g18044 Brassica carinata
BcaC05g25436 Brassica carinata
BcaC08g46352 Brassica carinata
BolC2t08639H Brassica oleracea
BolC2t12157H Brassica oleracea
BolC6t39350H Brassica oleracea
BolC9t59629H Brassica oleracea
BraA02t06617Z Brassica rapa
BraA02t09064Z Brassica rapa
BraA03t09709Z Brassica rapa
BraA07t31132Z Brassica rapa
BraA10t44903Z Brassica rapa
C02p25700 Brassica napus
C02p61090 Brassica napus
C03p04070 Brassica napus
C05p13120 Brassica napus
C06p40830 Brassica napus
C09p68820 Brassica napus
CAN.G563.5 Capsicum annuum
CAN.G587.63 Capsicum annuum
CAN.G677.12 Capsicum annuum
CAN.G677.14 Capsicum annuum
CAN.G73.10 Capsicum annuum
CAN.G982.35 Capsicum annuum
CANSAT64G0914 Cannabis sativa
CANSAT64G1735 Cannabis sativa
CANSAT80G2195 Cannabis sativa
CARHR061880 Cardamine hirsuta
CARHR205060 Cardamine hirsuta
CARHR263730 Cardamine hirsuta
Carub.0002s1562 Capsella rubella
Carub.0006s0702 Capsella rubella
Carub.0007s3699 Capsella rubella
Ca_02748_v3 Cicer arietinum L.
Ca_06918_v3 Cicer arietinum L.
Ca_21751_v3 Cicer arietinum L.
CBR_g24268 Chara braunii
Cc04_g08190 Coffea canephora
Cc07_g04540 Coffea canephora
Cc11_g11510 Coffea canephora
CDE01G0595 Ceratophyllum demersum
CDE02G4772 Ceratophyllum demersum
CDE10G0632 Ceratophyllum demersum
CDE10G1158 Ceratophyllum demersum
Cfa007701 Carpinus fangiana
Cfa008842 Carpinus fangiana
Cfa009506 Carpinus fangiana
Ciclev10012135m.g Citrus clementina
Ciclev10020248m.g Citrus clementina
Ciclev10032020m.g Citrus clementina
CiPaw.03G082400 Carya illinoinensis
CiPaw.04G051800 Carya illinoinensis
CiPaw.05G121000 Carya illinoinensis
CiPaw.05G202400 Carya illinoinensis
CiPaw.06G095300 Carya illinoinensis
CiPaw.15G114700 Carya illinoinensis
CiPaw.16G080500 Carya illinoinensis
ClCG04G011530 Citrullus lanatus
ClCG07G016090 Citrullus lanatus
ClCG08G010620 Citrullus lanatus
COL.COLO4_10655 Corchorus olitorius
COL.COLO4_27783 Corchorus olitorius
COL.COLO4_28851 Corchorus olitorius
Cpa.g.c38183 Carica papaya
Cpa.g.sc14.241 Carica papaya
Cpa.g.sc289.6 Carica papaya
Cpa.g.sc3.225 Carica papaya
Cre14.g620850 Chlamydomonas reinhardtii
CsaV3_1G003270 Cucumis sativus L.
CsaV3_1G006280 Cucumis sativus L.
CsaV3_4G009990 Cucumis sativus L.
CsaV3_4G010010 Cucumis sativus L.
CsaV3_6G033930 Cucumis sativus L.
CSS0006981 Camellia sinensis var. sinensis
CSS0019171 Camellia sinensis var. sinensis
CSS0019459 Camellia sinensis var. sinensis
CSS0026070 Camellia sinensis var. sinensis
CSS0034458 Camellia sinensis var. sinensis
CSS0046610 Camellia sinensis var. sinensis
CSS0050324 Camellia sinensis var. sinensis
DCAR_010178 Daucus carota
DCAR_025458 Daucus carota
DCAR_026689 Daucus carota
Dinv15579 Davidia involucrata
Dinv17466 Davidia involucrata
Dinv33873 Davidia involucrata
Dinv34016 Davidia involucrata
Dinv38636 Davidia involucrata
Duzib068G1269 Durio zibethinus
Duzib084G1433 Durio zibethinus
Duzib138G1912 Durio zibethinus
Duzib205G1049 Durio zibethinus
Duzib211G0143 Durio zibethinus
Duzib248G1444 Durio zibethinus
Duzib251G0026 Durio zibethinus
Duzib268G1711 Durio zibethinus
ECA233G2616 Erigeron canadensis
ECA246G2033 Erigeron canadensis
ECA246G3838 Erigeron canadensis
ECA247G2645 Erigeron canadensis
EL10Ac2g04431 Beta vulgaris
EL10Ac5g11196 Beta vulgaris
EL10Ac6g14666 Beta vulgaris
Eucgr.B00645 Eucalyptus grandis
Eucgr.B03113 Eucalyptus grandis
Eucgr.I02069 Eucalyptus grandis
FAN02G2480 Fragaria x ananassa
FAN05G4264 Fragaria x ananassa
FAN07G0900 Fragaria x ananassa
FAN08G1560 Fragaria x ananassa
FAN09G1236 Fragaria x ananassa
FAN12G1039 Fragaria x ananassa
FAN13G0549 Fragaria x ananassa
FAN14G2506 Fragaria x ananassa
FAN16G0361 Fragaria x ananassa
FAN17G2461 Fragaria x ananassa
FAN18G2916 Fragaria x ananassa
FAN22G1661 Fragaria x ananassa
FvH4_4g29230 Fragaria vesca
FvH4_5g13341 Fragaria vesca
FvH4_6g46290 Fragaria vesca
Glyma.01G066600 Glycine max
Glyma.02G123400 Glycine max
Glyma.05G017800 Glycine max
Glyma.08G252800 Glycine max
Glyma.17G082100 Glycine max
Glyma.18G275400 Glycine max
Gohir.A05G307000 Gossypium hirsutum
Gohir.A07G170500 Gossypium hirsutum
Gohir.A09G244000 Gossypium hirsutum
Gohir.A11G034400 Gossypium hirsutum
Gohir.A12G159200 Gossypium hirsutum
Gohir.A13G088700 Gossypium hirsutum
Gohir.D05G307300 Gossypium hirsutum
Gohir.D07G176700 Gossypium hirsutum
Gohir.D09G244900 Gossypium hirsutum
Gohir.D11G037900 Gossypium hirsutum
Gohir.D12G162500 Gossypium hirsutum
Gohir.D13G085900 Gossypium hirsutum
Gorai.001G197500 Gossypium raimondii
Gorai.006G269200 Gossypium raimondii
Gorai.007G040600 Gossypium raimondii
Gorai.008G175100 Gossypium raimondii
Gorai.009G327300 Gossypium raimondii
Gorai.013G098000 Gossypium raimondii
GSVIVG01008164001 Vitis vinifera
GSVIVG01010100001 Vitis vinifera
GSVIVG01036533001 Vitis vinifera
HanXRQChr02g0043331 Helianthus annuus
HanXRQChr03g0066601 Helianthus annuus
HanXRQChr04g0109421 Helianthus annuus
HanXRQChr08g0215631 Helianthus annuus
HanXRQChr15g0493921 Helianthus annuus
Haze_11854 Corylus avellana
Haze_14374 Corylus avellana
Haze_14375 Corylus avellana
Haze_18517 Corylus avellana
Hma1.2p1_0060F.1_g032680 Hydrangea macrophylla
Hma1.2p1_0428F.1_g150790 Hydrangea macrophylla
Hma1.2p1_0448F.1_g154850 Hydrangea macrophylla
Hma1.2p1_0473F.1_g160060 Hydrangea macrophylla
Hma1.2p1_0595F.1_g186220 Hydrangea macrophylla
HPP92_015327 Vanilla planifolia
HPP92_019132 Vanilla planifolia
HPP92_019138 Vanilla planifolia
HPP92_019429 Vanilla planifolia
Hund02542 Selenicereus undatus
Hund05817 Selenicereus undatus
Hund09966 Selenicereus undatus
Hund13666 Selenicereus undatus
Hund25152 Selenicereus undatus
Lalb_Chr07g0178441 Lupinus albus
Lalb_Chr10g0092671 Lupinus albus
Lalb_Chr10g0099231 Lupinus albus
Lalb_Chr12g0197401 Lupinus albus
Lalb_Chr13g0302651 Lupinus albus
Lalb_Chr17g0341501 Lupinus albus
Lj1g0024467 Lotus japonicus
Lj2g0012609 Lotus japonicus
Lj3A1026T82 Lonicera japonica
Lj4g0006918 Lotus japonicus
Lj9C437T9 Lonicera japonica
Lju361A7T17 Lonicera japonica
Lsat_1_v5_gn_1_14940 Lactuca sativa
Lsat_1_v5_gn_3_96981 Lactuca sativa
Lsat_1_v5_gn_5_24661 Lactuca sativa
Lsat_1_v5_gn_8_36960 Lactuca sativa
Manes.01G104200 Manihot esculenta
Manes.02G060100 Manihot esculenta
Manes.06G079000 Manihot esculenta
Manes.06G080300 Manihot esculenta
Manes.14G089600 Manihot esculenta
Manes.14G090700 Manihot esculenta
Mapoly0174s0004 Marchantia polymorpha
MBI14_g34644_MAGBIO Magnolia biondii
MBI15_g04987_MAGBIO Magnolia biondii
MBI15_g11300_MAGBIO Magnolia biondii
MD06G1206200 Malus domestica
MD09G1075900 Malus domestica
MD13G1056100 Malus domestica
MD14G1217100 Malus domestica
MD16G1055100 Malus domestica
MD17G1066600 Malus domestica
Medtr4g110040 Medicago truncatula
Medtr5g048350 Medicago truncatula
Medtr7g017320 Medicago truncatula
MELO3C002057.2 Cucumis melo
MELO3C011399.2 Cucumis melo
MELO3C017257.2 Cucumis melo
MELO3C018898.2 Cucumis melo
Migut.D01611 Erythranthe guttata
Migut.E00254 Erythranthe guttata
Migut.H00581 Erythranthe guttata
Migut.L01158 Erythranthe guttata
MSTRG.2288 Avicennia marina
MSTRG.4498 Avicennia marina
MSTRG.783 Avicennia marina
Nitab4.5_0000154g0110 Nicotiana tabacum
Nitab4.5_0001071g0060 Nicotiana tabacum
Nitab4.5_0001434g0110 Nicotiana tabacum
Nitab4.5_0002449g0130 Nicotiana tabacum
Nitab4.5_0002805g0020 Nicotiana tabacum
Nitab4.5_0004190g0040 Nicotiana tabacum
Nitab4.5_0006418g0010 Nicotiana tabacum
Nitab4.5_0008966g0020 Nicotiana tabacum
Nn3g17549 Nelumbo nucifera
Nn4g23548 Nelumbo nucifera
Oeu004428.1 Olea europaea
Oeu021808.3 Olea europaea
Oeu031932.1 Olea europaea
Oeu048116.1 Olea europaea
Oeu049879.1 Olea europaea
Oeu055076.1 Olea europaea
Oeu057227.2 Olea europaea
Os02g0726700 Oryza sativa ssp. japonica
Os08g0490000 Oryza sativa ssp. japonica
Os09g0475400 Oryza sativa ssp. japonica
Peaxi162Scf00013g00838 Petunia axillaris
Peaxi162Scf00017g03268 Petunia axillaris
Peaxi162Scf00188g01023 Petunia axillaris
Peaxi162Scf00884g00213 Petunia axillaris
Peaxi162Scf01002g00120 Petunia axillaris
PGR004G1470 Punica granatum
PGR083G0040 Punica granatum
PGR102G1812 Punica granatum
PGSC0003DMG400001919 Solanum tuberosum
PGSC0003DMG400004061 Solanum tuberosum
PGSC0003DMG400019654 Solanum tuberosum
PGSC0003DMG400024523 Solanum tuberosum
Phvul.003G037600 Phaseolus vulgaris
Phvul.003G181900 Phaseolus vulgaris
Phvul.008G025500 Phaseolus vulgaris
Potri.004G112900 Populus trichocarpa
Potri.008G112000 Populus trichocarpa
Potri.010G137600 Populus trichocarpa
Potri.012G065000 Populus trichocarpa
Potri.015G048000 Populus trichocarpa
Potri.017G101700 Populus trichocarpa
Pp3c13_22410 Physcomitrium patens
Pp3c15_720 Physcomitrium patens
Pp3c9_470 Physcomitrium patens
Prupe.1G294200 Prunus persica
Prupe.3G248100 Prunus persica
Prupe.5G210500 Prunus persica
Psat2g095560 Pisum sativum
Psat3g203920 Pisum sativum
Psat4g044840 Pisum sativum
PSO017G4194 Papaver somniferum
PSO063G0582 Papaver somniferum
PSO478G1821 Papaver somniferum
PSO782G2663 Papaver somniferum
QL02p065124 Quercus lobata
QL10p020993 Quercus lobata
RcHm_v2.0_Chr2g0164741 Rosa chinensis
RcHm_v2.0_Chr4g0437281 Rosa chinensis
RcHm_v2.0_Chr7g0183781 Rosa chinensis
Rhsim08G0077900 Rhododendron simsii
Rhsim08G0142600 Rhododendron simsii
Rhsim09G0121400 Rhododendron simsii
Rhsim12G0071100 Rhododendron simsii
Rhsim13G0139100 Rhododendron simsii
Sabra04G0072000 Salix brachista
Sabra08G0084700 Salix brachista
Sabra10G0106100 Salix brachista
Sabra15G0079100 Salix brachista
SalBow1G2053 Salvia bowleyana
SalBow2G0832 Salvia bowleyana
SalBow7G3182 Salvia bowleyana
Sc04g0007320 Simmondsia chinensis
Sc10g0000560 Simmondsia chinensis
Sc12g0006860 Simmondsia chinensis
Sed0006502 Sechium edule
Sed0006842 Sechium edule
Sed0008386 Sechium edule
Sed0015295 Sechium edule
Sed0015941 Sechium edule
SGA_v2.0_scaffold16G07829 Striga asiatica
SGA_v2.0_scaffold287G47190 Striga asiatica
SGA_v2.0_scaffold36G14494 Striga asiatica
SGA_v2.0_scaffold42G16055 Striga asiatica
SHI18997 Sapria himalayana
SHI18998 Sapria himalayana
SMO116G0088 Selaginella moellendorffii
Solyc03g046570.4 Solanum lycopersicum
Solyc03g114720.3 Solanum lycopersicum
Solyc04g005280.4 Solanum lycopersicum
Solyc05g011810.4 Solanum lycopersicum
Solyc06g069370.4 Solanum lycopersicum
Solyc12g027805.1 Solanum lycopersicum
Sopen03g010770 Solanum pennellii
Sopen03g033800 Solanum pennellii
Sopen04g001260 Solanum pennellii
Sopen05g006570 Solanum pennellii
Sopen06g026630 Solanum pennellii
Sp2g24120 Schrenkiella parvula
Sp5g24120 Schrenkiella parvula
Sp6g34830 Schrenkiella parvula
Sp7g03050 Schrenkiella parvula
TAR371G0854 Trochodendron aralioides
TAR374G0518 Trochodendron aralioides
TAR374G1509 Trochodendron aralioides
TAR622G0078 Trochodendron aralioides
TAR629G1145 Trochodendron aralioides
THA.LOC104800379 Tarenaya hassleriana
THA.LOC104801016 Tarenaya hassleriana
THA.LOC104818360 Tarenaya hassleriana
THA.LOC104821989 Tarenaya hassleriana
THA.LOC104822890 Tarenaya hassleriana
Thecc.02G321700 Theobroma cacao
Thecc.03G109700 Theobroma cacao
Thecc.04G107700 Theobroma cacao
Thhalv10013181m.g Eutrema salsugineum
Thhalv10017520m.g Eutrema salsugineum
Thhalv10018889m.g Eutrema salsugineum
Thhalv10027863m.g Eutrema salsugineum
TPR.G1979 Trifolium pratense
TPR.G20013 Trifolium pratense
TPR.G27687 Trifolium pratense
TPR.G3268 Trifolium pratense
TWI31G0420 Tripterygium wilfordii
TWI32G0276 Tripterygium wilfordii
TWI34G1427 Tripterygium wilfordii
TWI60G0216 Tripterygium wilfordii
unitig_699.g19044 Utricularia gibba
unitig_699.g19904 Utricularia gibba
unitig_747.g21191 Utricularia gibba
unitig_8.g3176 Utricularia gibba
vmacro01295 Vaccinium macrocarpon
vmacro17659 Vaccinium macrocarpon
vmacro18121 Vaccinium macrocarpon
vmacro18122 Vaccinium macrocarpon
vmacro23507 Vaccinium macrocarpon
VMungo0720G1423 Vigna mungo
VMungo1215G1907 Vigna mungo
VMungo1215G2783 Vigna mungo
VMungo1383G0538 Vigna mungo
Zm00001eb101410 Zea mays
Zm00001eb253350 Zea mays
Zm00001eb315910 Zea mays

User provided reference genes

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