Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00210 Brassica napus
A05p21750 Brassica napus
A05p38220 Brassica napus
A07p22730 Brassica napus
A09p49080 Brassica napus
Aa31LG10G11000 Aethionema arabicum
Aa31LG1G23220 Aethionema arabicum
Aa31LG5G18850 Aethionema arabicum
Aa31LG5G19270 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.293 Anthoceros agrestis
Actinidia00659 Actinidia chinensis
Actinidia07813 Actinidia chinensis
Actinidia11557 Actinidia chinensis
Actinidia23209 Actinidia chinensis
Actinidia29075 Actinidia chinensis
Actinidia29720 Actinidia chinensis
Actinidia33909 Actinidia chinensis
Ah.10g036220 Amaranthus hybridus
Ah.16g103880 Amaranthus hybridus
AL3G22600 Arabidopsis lyrata
AL4G38090 Arabidopsis lyrata
AL4G38110 Arabidopsis lyrata
AL5G37410 Arabidopsis lyrata
AL6G10450 Arabidopsis lyrata
AL6G20030 Arabidopsis lyrata
Aqoxy1G01309 Aquilegia oxysepala
Aqoxy2G00800 Aquilegia oxysepala
Aqoxy3G01958 Aquilegia oxysepala
Aqoxy7G01564 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0N168C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2PG163 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.405Q8S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7TR677 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A6HILS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AYD98V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B2GHU0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GT8M3N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L5QT4E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MAQ2UP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U05FW7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VS9LD3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZGR60K Arachis hypogaea
AT2G40300 Arabidopsis thaliana
AT3G11050 Arabidopsis thaliana
AT3G56090 Arabidopsis thaliana
AT5G01600 Arabidopsis thaliana
ATR0681G396 Amborella trichopoda
Atru.chr12.97 Acer truncatum
Atru.chr12.98 Acer truncatum
Atru.chr8.2309 Acer truncatum
Atru.chr8.2320 Acer truncatum
AUR62012304 Chenopodium quinoa
AUR62022943 Chenopodium quinoa
AUR62030516 Chenopodium quinoa
AUR62030517 Chenopodium quinoa
AUR62030775 Chenopodium quinoa
AUR62030776 Chenopodium quinoa
BcaB01g00031 Brassica carinata
BcaB01g06106 Brassica carinata
BcaB01g06238 Brassica carinata
BcaB02g07669 Brassica carinata
BcaB06g26714 Brassica carinata
BcaC02g07233 Brassica carinata
BcaC05g27145 Brassica carinata
BcaC05g29424 Brassica carinata
BcaC07g39925 Brassica carinata
BcaC08g44759 Brassica carinata
BcaNung03230 Brassica carinata
BolC3t12592H Brassica oleracea
BolC4t28478H Brassica oleracea
BolC5t34366H Brassica oleracea
BolC6t37500H Brassica oleracea
BolC8t50761H Brassica oleracea
BraA03t09411Z Brassica rapa
BraA05t22614Z Brassica rapa
BraA07t29942Z Brassica rapa
BraA09t40360Z Brassica rapa
C03p00360 Brassica napus
C05p57040 Brassica napus
C06p23270 Brassica napus
C08p13720 Brassica napus
C08p31400 Brassica napus
CAN.G1268.8 Capsicum annuum
CAN.G1782.2 Capsicum annuum
CAN.G44.3 Capsicum annuum
CANSAT56G0516 Cannabis sativa
CANSAT56G2657 Cannabis sativa
CARHR083210 Cardamine hirsuta
CARHR085630 Cardamine hirsuta
CARHR135380 Cardamine hirsuta
CARHR166170 Cardamine hirsuta
CARHR211950 Cardamine hirsuta
Carub.0003s1034 Capsella rubella
Carub.0004s2254 Capsella rubella
Carub.0005s2284 Capsella rubella
Carub.0006s0023 Capsella rubella
Ca_05991_v3 Cicer arietinum L.
Ca_07686_v3 Cicer arietinum L.
Ca_20339_v3 Cicer arietinum L.
CBR_g1080 Chara braunii
CBR_g12920 Chara braunii
CBR_g12921 Chara braunii
CBR_g23292 Chara braunii
CBR_g74638 Chara braunii
Cc02_g06050 Coffea canephora
Cc06_g00890 Coffea canephora
CDE04G2360 Ceratophyllum demersum
CDE06G0842 Ceratophyllum demersum
CDE12G0885 Ceratophyllum demersum
Cfa001281 Carpinus fangiana
Cfa001282 Carpinus fangiana
Cfa017131 Carpinus fangiana
Ciclev10032471m.g Citrus clementina
CiPaw.01G301300 Carya illinoinensis
CiPaw.02G195600 Carya illinoinensis
CiPaw.09G213800 Carya illinoinensis
CiPaw.14G055400 Carya illinoinensis
ClCG07G004520 Citrullus lanatus
COL.COLO4_04230 Corchorus olitorius
COL.COLO4_11125 Corchorus olitorius
COL.COLO4_14471 Corchorus olitorius
COL.COLO4_14899 Corchorus olitorius
COL.COLO4_17054 Corchorus olitorius
COL.COLO4_25783 Corchorus olitorius
COL.COLO4_36301 Corchorus olitorius
Cpa.g.sc120.18 Carica papaya
Cpa.g.sc19.134 Carica papaya
Cpa.g.sc5.220 Carica papaya
Cre09.g387800 Chlamydomonas reinhardtii
Cre13.g574500 Chlamydomonas reinhardtii
CsaV3_5G010460 Cucumis sativus L.
CSS0005565 Camellia sinensis var. sinensis
CSS0009697 Camellia sinensis var. sinensis
CSS0013515 Camellia sinensis var. sinensis
CSS0014716 Camellia sinensis var. sinensis
CSS0015665 Camellia sinensis var. sinensis
CSS0017555 Camellia sinensis var. sinensis
CSS0020829 Camellia sinensis var. sinensis
CSS0029126 Camellia sinensis var. sinensis
CSS0034189 Camellia sinensis var. sinensis
CSS0036950 Camellia sinensis var. sinensis
CSS0037047 Camellia sinensis var. sinensis
CSS0037749 Camellia sinensis var. sinensis
CSS0043827 Camellia sinensis var. sinensis
DCAR_011843 Daucus carota
DCAR_024000 Daucus carota
DCAR_024802 Daucus carota
DCAR_028879 Daucus carota
Dinv09659 Davidia involucrata
Dinv10266 Davidia involucrata
Dinv12145 Davidia involucrata
Dinv21775 Davidia involucrata
Dinv28683 Davidia involucrata
Dinv30018 Davidia involucrata
Duzib093G1308 Durio zibethinus
Duzib106G1218 Durio zibethinus
Duzib114G0554 Durio zibethinus
Duzib128G0187 Durio zibethinus
Duzib128G1650 Durio zibethinus
Duzib150G0811 Durio zibethinus
ECA232G2267 Erigeron canadensis
ECA233G4898 Erigeron canadensis
ECA236G2498 Erigeron canadensis
ECA238G4230 Erigeron canadensis
EL10Ac2g04893 Beta vulgaris
EL10Ac4g08432 Beta vulgaris
EL10Ac4g08433 Beta vulgaris
EL10Ac5g12503 Beta vulgaris
EL10Ac6g13931 Beta vulgaris
Eucgr.G03088 Eucalyptus grandis
Eucgr.J00176 Eucalyptus grandis
Eucgr.K02961 Eucalyptus grandis
FAN01G1780 Fragaria x ananassa
FAN01G2638 Fragaria x ananassa
FAN02G2836 Fragaria x ananassa
FAN03G3188 Fragaria x ananassa
FAN03G3448 Fragaria x ananassa
FAN05G4202 Fragaria x ananassa
FAN05G5691 Fragaria x ananassa
FAN06G2176 Fragaria x ananassa
FAN09G2009 Fragaria x ananassa
FAN09G3152 Fragaria x ananassa
FAN10G2732 Fragaria x ananassa
FAN13G2956 Fragaria x ananassa
FAN14G3225 Fragaria x ananassa
FAN16G0355 Fragaria x ananassa
FAN21G1187 Fragaria x ananassa
FvH4_6g10770 Fragaria vesca
FvH4_7g25100 Fragaria vesca
Glyma.01G124500 Glycine max
Glyma.02G230432 Glycine max
Glyma.02G262500 Glycine max
Glyma.03G050100 Glycine max
Glyma.05G095400 Glycine max
Glyma.07G155200 Glycine max
Glyma.11G232600 Glycine max
Glyma.14G056800 Glycine max
Glyma.14G197500 Glycine max
Glyma.18G024600 Glycine max
Glyma.18G205800 Glycine max
Gohir.A04G095070 Gossypium hirsutum
Gohir.A05G304500 Gossypium hirsutum
Gohir.A05G331900 Gossypium hirsutum
Gohir.A09G167200 Gossypium hirsutum
Gohir.A10G238500 Gossypium hirsutum
Gohir.D04G070600 Gossypium hirsutum
Gohir.D04G135050 Gossypium hirsutum
Gohir.D05G303500 Gossypium hirsutum
Gohir.D09G163100 Gossypium hirsutum
Gohir.D10G250400 Gossypium hirsutum
Gorai.006G184700 Gossypium raimondii
Gorai.009G322800 Gossypium raimondii
Gorai.011G290900 Gossypium raimondii
Gorai.012G079200 Gossypium raimondii
Gorai.012G079300 Gossypium raimondii
Gorai.012G118700 Gossypium raimondii
GSVIVG01024667001 Vitis vinifera
GSVIVG01030291001 Vitis vinifera
GSVIVG01030293001 Vitis vinifera
GSVIVG01030294001 Vitis vinifera
GSVIVG01032754001 Vitis vinifera
HanXRQChr07g0203041 Helianthus annuus
HanXRQChr08g0221961 Helianthus annuus
HanXRQChr14g0459361 Helianthus annuus
HanXRQChr16g0509611 Helianthus annuus
HanXRQChr16g0509631 Helianthus annuus
HanXRQChr17g0560901 Helianthus annuus
Haze_17271 Corylus avellana
Haze_21070 Corylus avellana
Haze_26184 Corylus avellana
Hma1.2p1_0292F.1_g115550 Hydrangea macrophylla
Hma1.2p1_0501F.1_g167520 Hydrangea macrophylla
Hma1.2p1_3186F.1_g333770 Hydrangea macrophylla
HPP92_015421 Vanilla planifolia
HPP92_017930 Vanilla planifolia
HPP92_019103 Vanilla planifolia
HPP92_026975 Vanilla planifolia
Hund10939 Selenicereus undatus
Hund13896 Selenicereus undatus
Hund14920 Selenicereus undatus
Hund15884 Selenicereus undatus
Hund30454 Selenicereus undatus
Lalb_Chr03g0043401 Lupinus albus
Lalb_Chr04g0252041 Lupinus albus
Lalb_Chr04g0252061 Lupinus albus
Lalb_Chr07g0191161 Lupinus albus
Lalb_Chr10g0105281 Lupinus albus
Lalb_Chr12g0207131 Lupinus albus
Lalb_Chr12g0207151 Lupinus albus
Lalb_Chr13g0291401 Lupinus albus
Lj1A960T75 Lonicera japonica
Lj1g0019653 Lotus japonicus
Lj2C69T3 Lonicera japonica
Lj3g0027522 Lotus japonicus
Lj6g0027116 Lotus japonicus
Lj8C63T4 Lonicera japonica
LjContig00357g0001337 Lotus japonicus
Lsat_1_v5_gn_2_124481 Lactuca sativa
Lsat_1_v5_gn_8_102821 Lactuca sativa
Lsat_1_v5_gn_8_12941 Lactuca sativa
Manes.07G134600 Manihot esculenta
Manes.08G095800 Manihot esculenta
Manes.09G110600 Manihot esculenta
Manes.10G008900 Manihot esculenta
Mapoly0006s0054 Marchantia polymorpha
Mapoly0107s0025 Marchantia polymorpha
MBI03_g30479_MAGBIO Magnolia biondii
MCO08G185 Micromonas commoda
MD01G1157700 Malus domestica
MD03G1060600 Malus domestica
MD04G1164500 Malus domestica
MD07G1226500 Malus domestica
MD08G1149100 Malus domestica
MD12G1178200 Malus domestica
MD12G1178500 Malus domestica
Medtr4g014540 Medicago truncatula
Medtr5g072560 Medicago truncatula
Medtr5g083170 Medicago truncatula
Medtr7g069980 Medicago truncatula
MELO3C018379.2 Cucumis melo
Migut.D00853 Erythranthe guttata
Migut.F00638 Erythranthe guttata
Migut.J00114 Erythranthe guttata
MSTRG.193 Avicennia marina
MSTRG.5550 Avicennia marina
MSTRG.8926 Avicennia marina
Nitab4.5_0000058g0120 Nicotiana tabacum
Nitab4.5_0000789g0100 Nicotiana tabacum
Nitab4.5_0003391g0130 Nicotiana tabacum
Nitab4.5_0005049g0020 Nicotiana tabacum
Nn2g10982 Nelumbo nucifera
Nn2g13235 Nelumbo nucifera
Oeu023921.1 Olea europaea
Oeu027336.1 Olea europaea
Oeu030466.1 Olea europaea
Oeu033559.1 Olea europaea
Oeu051630.1 Olea europaea
Oeu057634.1 Olea europaea
Oeu063380.1 Olea europaea
Os11g0106700 Oryza sativa ssp. japonica
Os12g0106000 Oryza sativa ssp. japonica
Peaxi162Scf00284g00521 Petunia axillaris
Peaxi162Scf01149g00318 Petunia axillaris
PGR031G2658 Punica granatum
PGR044G1549 Punica granatum
PGR142G2545 Punica granatum
PGSC0003DMG400008787 Solanum tuberosum
PGSC0003DMG400027119 Solanum tuberosum
PGSC0003DMG400029195 Solanum tuberosum
Phvul.001G245700 Phaseolus vulgaris
Phvul.008G093700 Phaseolus vulgaris
Phvul.008G221200 Phaseolus vulgaris
Phvul.008G258100 Phaseolus vulgaris
Phvul.010G065600 Phaseolus vulgaris
Potri.006G103900 Populus trichocarpa
Potri.008G072700 Populus trichocarpa
Potri.010G184500 Populus trichocarpa
Potri.016G124700 Populus trichocarpa
Potri.016G124900 Populus trichocarpa
Pp3c10_3790 Physcomitrium patens
Pp3c13_20400 Physcomitrium patens
Pp3c14_4780 Physcomitrium patens
Pp3c16_3060 Physcomitrium patens
Pp3c1_22120 Physcomitrium patens
Pp3c5_6220 Physcomitrium patens
PRCOL_00000267 Prasinoderma coloniale
PRCOL_00004420 Prasinoderma coloniale
PRCOL_00005013 Prasinoderma coloniale
Prupe.2G256100 Prunus persica
Prupe.6G050900 Prunus persica
Prupe.6G283700 Prunus persica
Psat2g030160 Pisum sativum
Psat2g030280 Pisum sativum
Psat3g124720 Pisum sativum
Psat5g171400 Pisum sativum
Psat7g247120 Pisum sativum
PSO079G0007 Papaver somniferum
PSO079G0010 Papaver somniferum
PSO349G0291 Papaver somniferum
PSO423G0066 Papaver somniferum
PSO423G0137 Papaver somniferum
PSO423G0253 Papaver somniferum
PSO765G0111 Papaver somniferum
PSO801G0828 Papaver somniferum
QL01p039929 Quercus lobata
QL07p034155 Quercus lobata
QL08p063722 Quercus lobata
RcHm_v2.0_Chr1g0370951 Rosa chinensis
RcHm_v2.0_Chr3g0461811 Rosa chinensis
RcHm_v2.0_Chr5g0024071 Rosa chinensis
RcHm_v2.0_Chr5g0071231 Rosa chinensis
RcHm_v2.0_Chr6g0262891 Rosa chinensis
Rhsim03G0146700 Rhododendron simsii
Rhsim05G0224000 Rhododendron simsii
Rhsim09G0180100 Rhododendron simsii
Sabra06G0080400 Salix brachista
Sabra08G0054000 Salix brachista
Sabra10G0141700 Salix brachista
Sabra16G0119000 Salix brachista
Sabra16G0119200 Salix brachista
SalBow3G3409 Salvia bowleyana
SalBow3G4121 Salvia bowleyana
SalBow5G2734 Salvia bowleyana
Sc10g0002640 Simmondsia chinensis
Sc14g0005540 Simmondsia chinensis
Sc22g0002650 Simmondsia chinensis
Sed0019864 Sechium edule
Sed0025946 Sechium edule
SEGI_22333 Sequoiadendron giganteum
SEGI_37067 Sequoiadendron giganteum
SGA_v2.0_scaffold145G36004 Striga asiatica
SGA_v2.0_scaffold665G53410 Striga asiatica
SMO353G0395 Selaginella moellendorffii
SMO364G0867 Selaginella moellendorffii
Solyc05g052470.3 Solanum lycopersicum
Solyc06g050980.3 Solanum lycopersicum
Sopen05g031000 Solanum pennellii
Sopen06g016780 Solanum pennellii
Sopen09g009100 Solanum pennellii
Sopen11g023220 Solanum pennellii
Sp3g09380 Schrenkiella parvula
Sp4g22630 Schrenkiella parvula
Sp5g06440 Schrenkiella parvula
Sp6g40860 Schrenkiella parvula
TAR623G0747 Trochodendron aralioides
TAR633G2481 Trochodendron aralioides
TAR636G0719 Trochodendron aralioides
THA.LOC104811635 Tarenaya hassleriana
THA.LOC104816182 Tarenaya hassleriana
THA.LOC104823301 Tarenaya hassleriana
THA.LOC104824337 Tarenaya hassleriana
Thecc.05G008300 Theobroma cacao
Thecc.09G355500 Theobroma cacao
Thecc.10G011200 Theobroma cacao
Thhalv10006176m.g Eutrema salsugineum
Thhalv10014471m.g Eutrema salsugineum
Thhalv10017112m.g Eutrema salsugineum
Thhalv10021377m.g Eutrema salsugineum
TPR.G22741 Trifolium pratense
TPR.G33758 Trifolium pratense
TPR.G38400 Trifolium pratense
TPR.G5214 Trifolium pratense
TPR.G6612 Trifolium pratense
TWI09G0603 Tripterygium wilfordii
TWI73G0273 Tripterygium wilfordii
TWI74G0318 Tripterygium wilfordii
unitig_27.g24849 Utricularia gibba
vmacro08899 Vaccinium macrocarpon
vmacro10003 Vaccinium macrocarpon
vmacro17689 Vaccinium macrocarpon
vmacro20316 Vaccinium macrocarpon
vmacro20317 Vaccinium macrocarpon
VMungo0331G0011 Vigna mungo
VMungo0647G0960 Vigna mungo
VMungo0647G2222 Vigna mungo
VMungo0720G2705 Vigna mungo
VMungo1383G2194 Vigna mungo
VMungo1383G3302 Vigna mungo
Zm00001eb195010 Zea mays
Zm00001eb404870 Zea mays

User provided reference genes

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