Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p38980 Brassica napus
A06p02720 Brassica napus
A06p02730 Brassica napus
A06p37080 Brassica napus
A06p45340 Brassica napus
Aa31LG11G9790 Aethionema arabicum
Aa31LG9G5940 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1075 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1077 Anthoceros agrestis
Actinidia01509 Actinidia chinensis
Actinidia01682 Actinidia chinensis
Actinidia10873 Actinidia chinensis
Actinidia10874 Actinidia chinensis
Actinidia31480 Actinidia chinensis
Ah.02g120010 Amaranthus hybridus
Ah.03g134540 Amaranthus hybridus
Ah.12g053770 Amaranthus hybridus
AL1G12790 Arabidopsis lyrata
AL2G23870 Arabidopsis lyrata
AL3G15140 Arabidopsis lyrata
AL3G16520 Arabidopsis lyrata
AL3G16530 Arabidopsis lyrata
AL5G41580 Arabidopsis lyrata
AL6G38180 Arabidopsis lyrata
AL6G38730 Arabidopsis lyrata
AL845U10010 Arabidopsis lyrata
AL845U10020 Arabidopsis lyrata
AL881U10010 Arabidopsis lyrata
AL8G11230 Arabidopsis lyrata
Aqoxy226s002 Aquilegia oxysepala
Aqoxy3G02582 Aquilegia oxysepala
Aqoxy7G03321 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.06RU3W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5T8U7P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DU4J1Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N42Z6C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SSR0B3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TB6HA2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UJ98VB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZW7PV2 Arachis hypogaea
AT1G07190 Arabidopsis thaliana
AT3G05775 Arabidopsis thaliana
AT3G05780 Arabidopsis thaliana
AT3G05790 Arabidopsis thaliana
AT5G26860 Arabidopsis thaliana
AT5G47040 Arabidopsis thaliana
ATR0796G182 Amborella trichopoda
ATR0829G230 Amborella trichopoda
Atru.chr2.125 Acer truncatum
Atru.chr2.182 Acer truncatum
Atru.chr2.183 Acer truncatum
Atru.chr2.221 Acer truncatum
Atru.chr9.1136 Acer truncatum
Atru.chr9.1137 Acer truncatum
AUR62000399 Chenopodium quinoa
AUR62006755 Chenopodium quinoa
AUR62007207 Chenopodium quinoa
AUR62018794 Chenopodium quinoa
BcaB07g33548 Brassica carinata
BcaB07g33551 Brassica carinata
BcaB07g33552 Brassica carinata
BcaC03g17826 Brassica carinata
BcaC04g21082 Brassica carinata
BcaC05g27912 Brassica carinata
BcaC05g29780 Brassica carinata
BcaC06g31421 Brassica carinata
BcaC06g34292 Brassica carinata
BcaC08g43275 Brassica carinata
BcaC08g43276 Brassica carinata
BcaC08g43277 Brassica carinata
BcaC09g47847 Brassica carinata
BcaC09g47848 Brassica carinata
BcaC09g47849 Brassica carinata
BcaC09g47850 Brassica carinata
BcaC09g47851 Brassica carinata
BcaNung03668 Brassica carinata
BcaNung03919 Brassica carinata
BolC1t05667H Brassica oleracea
BolC1t05668H Brassica oleracea
BolC1t05669H Brassica oleracea
BolC1t05670H Brassica oleracea
BolC2t11917H Brassica oleracea
BolC5t32653H Brassica oleracea
BolC6t35734H Brassica oleracea
BolC6t35735H Brassica oleracea
BolC7t43613H Brassica oleracea
BolC7t44666H Brassica oleracea
BolC8t47133H Brassica oleracea
BolC9t53541H Brassica oleracea
BolC9t56426H Brassica oleracea
BolC9t58100H Brassica oleracea
BraA01t04474Z Brassica rapa
BraA01t04493Z Brassica rapa
BraA01t04494Z Brassica rapa
BraA02t08868Z Brassica rapa
BraA06t23480Z Brassica rapa
BraA06t23481Z Brassica rapa
BraA06t26633Z Brassica rapa
BraA06t27403Z Brassica rapa
C02p32430 Brassica napus
C02p58570 Brassica napus
C04p41210 Brassica napus
C05p14480 Brassica napus
C05p39200 Brassica napus
C06p06230 Brassica napus
C06p06250 Brassica napus
C06p06260 Brassica napus
C06p06270 Brassica napus
C07p30680 Brassica napus
C07p41360 Brassica napus
C08p03360 Brassica napus
C09p06210 Brassica napus
C09p35940 Brassica napus
C09p52300 Brassica napus
C09p52310 Brassica napus
CAN.G167.13 Capsicum annuum
CAN.G167.15 Capsicum annuum
CAN.G2431.1 Capsicum annuum
CAN.G572.56 Capsicum annuum
CANSAT21G1409 Cannabis sativa
CANSAT54G1984 Cannabis sativa
CARHR080240 Cardamine hirsuta
CARHR174430 Cardamine hirsuta
CARHR186670 Cardamine hirsuta
Carub.0003s0515 Capsella rubella
Carub.0006s2452 Capsella rubella
Carub.0008s0078 Capsella rubella
Ca_10170_v3 Cicer arietinum L.
Ca_22034_v3 Cicer arietinum L.
Ca_22036_v3 Cicer arietinum L.
Ca_24625_v3 Cicer arietinum L.
Ca_30665_v3 Cicer arietinum L.
CBR_g31118 Chara braunii
CBR_g31124 Chara braunii
CBR_g37235 Chara braunii
CBR_g75101 Chara braunii
Cc02_g35000 Coffea canephora
Cc08_g01590 Coffea canephora
CDE02G0837 Ceratophyllum demersum
CDE05G1119 Ceratophyllum demersum
CDE11G0316 Ceratophyllum demersum
CDE11G0729 Ceratophyllum demersum
CDE11G0937 Ceratophyllum demersum
Cfa006700 Carpinus fangiana
Cfa012363 Carpinus fangiana
Cfa022261 Carpinus fangiana
Cfa024900 Carpinus fangiana
Ciclev10000120m.g Citrus clementina
Ciclev10018797m.g Citrus clementina
CiPaw.02G187900 Carya illinoinensis
CiPaw.07G029500 Carya illinoinensis
CiPaw.11G086000 Carya illinoinensis
CiPaw.12G058900 Carya illinoinensis
ClCG00G002460 Citrullus lanatus
ClCG02G014960 Citrullus lanatus
ClCG09G022100 Citrullus lanatus
ClCG10G001960 Citrullus lanatus
COL.COLO4_04161 Corchorus olitorius
COL.COLO4_04162 Corchorus olitorius
COL.COLO4_05554 Corchorus olitorius
COL.COLO4_05555 Corchorus olitorius
COL.COLO4_06710 Corchorus olitorius
Cpa.g.sc48.158 Carica papaya
Cpa.g.sc48.159 Carica papaya
Cpa.g.sc76.10 Carica papaya
Cre06.g281350 Chlamydomonas reinhardtii
CsaV3_2G007040 Cucumis sativus L.
CsaV3_3G002090 Cucumis sativus L.
CSS0002145 Camellia sinensis var. sinensis
CSS0031861 Camellia sinensis var. sinensis
DCAR_005419 Daucus carota
DCAR_005420 Daucus carota
DCAR_005596 Daucus carota
DCAR_008306 Daucus carota
DCAR_017356 Daucus carota
Dinv24440 Davidia involucrata
Dinv25171 Davidia involucrata
Dinv28901 Davidia involucrata
Dinv28902 Davidia involucrata
Dinv30892 Davidia involucrata
Duzib068G0281 Durio zibethinus
Duzib106G0804 Durio zibethinus
Duzib128G0547 Durio zibethinus
Duzib177G0746 Durio zibethinus
Duzib205G1018 Durio zibethinus
ECA233G5155 Erigeron canadensis
ECA234G1965 Erigeron canadensis
ECA240G3842 Erigeron canadensis
EL10Ac4g09446 Beta vulgaris
EL10Ac5g12211 Beta vulgaris
EL10Ac6g14391 Beta vulgaris
Eucgr.E00326 Eucalyptus grandis
Eucgr.L00266 Eucalyptus grandis
FAN02G3316 Fragaria x ananassa
FAN03G3407 Fragaria x ananassa
FAN04G1081 Fragaria x ananassa
FAN05G3889 Fragaria x ananassa
FAN06G0007 Fragaria x ananassa
FAN08G0132 Fragaria x ananassa
FAN09G2106 Fragaria x ananassa
FAN10G3276 Fragaria x ananassa
FAN13G2262 Fragaria x ananassa
FAN14G2853 Fragaria x ananassa
FAN18G1618 Fragaria x ananassa
FAN18G2223 Fragaria x ananassa
FvH4_5g20910 Fragaria vesca
FvH4_6g07420 Fragaria vesca
FvH4_7g03300 Fragaria vesca
Glyma.01G203100 Glycine max
Glyma.05G068600 Glycine max
Glyma.06G236800 Glycine max
Glyma.08G026800 Glycine max
Glyma.10G147200 Glycine max
Glyma.11G039951 Glycine max
Glyma.17G151100 Glycine max
Glyma.20G097700 Glycine max
Gohir.A08G161100 Gossypium hirsutum
Gohir.A08G205900 Gossypium hirsutum
Gohir.A11G029700 Gossypium hirsutum
Gohir.A11G273200 Gossypium hirsutum
Gohir.D03G117533 Gossypium hirsutum
Gohir.D05G286400 Gossypium hirsutum
Gohir.D06G054700 Gossypium hirsutum
Gohir.D08G181200 Gossypium hirsutum
Gohir.D08G222800 Gossypium hirsutum
Gohir.D09G069933 Gossypium hirsutum
Gohir.D11G028200 Gossypium hirsutum
Gohir.D11G283300 Gossypium hirsutum
Gorai.004G190200 Gossypium raimondii
Gorai.004G236600 Gossypium raimondii
Gorai.006G084200 Gossypium raimondii
Gorai.007G030900 Gossypium raimondii
Gorai.007G306200 Gossypium raimondii
GSVIVG01013264001 Vitis vinifera
GSVIVG01031236001 Vitis vinifera
HanXRQChr03g0086981 Helianthus annuus
HanXRQChr10g0294481 Helianthus annuus
HanXRQChr15g0475561 Helianthus annuus
HanXRQChr16g0513821 Helianthus annuus
Haze_04062 Corylus avellana
Haze_08320 Corylus avellana
Haze_26118 Corylus avellana
Haze_26244 Corylus avellana
Hma1.2p1_0008F-1.1_g005610 Hydrangea macrophylla
Hma1.2p1_0414F.1_g147580 Hydrangea macrophylla
HPP92_017242 Vanilla planifolia
HPP92_017243 Vanilla planifolia
HPP92_017244 Vanilla planifolia
HPP92_025427 Vanilla planifolia
HPP92_027566 Vanilla planifolia
Hund11295 Selenicereus undatus
Lalb_Chr02g0147821 Lupinus albus
Lalb_Chr05g0214121 Lupinus albus
Lalb_Chr05g0220701 Lupinus albus
Lalb_Chr05g0220711 Lupinus albus
Lalb_Chr21g0310321 Lupinus albus
Lj2C249T19 Lonicera japonica
Lj2g0026955 Lotus japonicus
Lj4g0002730 Lotus japonicus
Lj5A334G51 Lonicera japonica
Lj5C334T7 Lonicera japonica
Lj5g0020416 Lotus japonicus
Lsat_1_v5_gn_1_118981 Lactuca sativa
Lsat_1_v5_gn_5_103920 Lactuca sativa
Lsat_1_v5_gn_5_10461 Lactuca sativa
Lsat_1_v5_gn_6_67340 Lactuca sativa
Lsat_1_v5_gn_6_89400 Lactuca sativa
Manes.08G111500 Manihot esculenta
Manes.17G020300 Manihot esculenta
Mapoly0002s0303 Marchantia polymorpha
Mapoly1100s0003 Marchantia polymorpha
MBI04_g03355_MAGBIO Magnolia biondii
MBI04_g03357_MAGBIO Magnolia biondii
MBI04_g03359_MAGBIO Magnolia biondii
MBI04_g40636_MAGBIO Magnolia biondii
MBI12_g23371_MAGBIO Magnolia biondii
MCO07G399 Micromonas commoda
MCO16G463 Micromonas commoda
MD02G1284000 Malus domestica
MD04G1112700 Malus domestica
MD04G1193200 Malus domestica
MD06G1043200 Malus domestica
MD07G1050000 Malus domestica
MD12G1206100 Malus domestica
MD16G1267600 Malus domestica
Medtr1522s0010 Medicago truncatula
Medtr1g083990 Medicago truncatula
Medtr1g084020 Medicago truncatula
Medtr1g084030 Medicago truncatula
Medtr4g099020 Medicago truncatula
Medtr5g013790 Medicago truncatula
MELO3C004189.2 Cucumis melo
MELO3C013881.2 Cucumis melo
MELO3C027261.2 Cucumis melo
MELO3C027928.2 Cucumis melo
Migut.E00806 Erythranthe guttata
Migut.E00903 Erythranthe guttata
Migut.N01380 Erythranthe guttata
MSTRG.1963 Avicennia marina
MSTRG.27942 Avicennia marina
Nitab4.5_0000155g0060 Nicotiana tabacum
Nitab4.5_0000155g0070 Nicotiana tabacum
Nitab4.5_0000155g0080 Nicotiana tabacum
Nitab4.5_0001444g0040 Nicotiana tabacum
Nitab4.5_0003894g0030 Nicotiana tabacum
Nitab4.5_0003894g0040 Nicotiana tabacum
Nitab4.5_0003894g0050 Nicotiana tabacum
Nitab4.5_0004832g0010 Nicotiana tabacum
Nn1g00687 Nelumbo nucifera
Nn3g21688 Nelumbo nucifera
Nn4g25390 Nelumbo nucifera
Nn4g25600 Nelumbo nucifera
Oeu028043.1 Olea europaea
Oeu031187.1 Olea europaea
Oeu053064.1 Olea europaea
Oeu053065.1 Olea europaea
Oeu053708.1 Olea europaea
Oeu054317.1 Olea europaea
Oeu064819.1 Olea europaea
Os03g0306400 Oryza sativa ssp. japonica
Os07g0689300 Oryza sativa ssp. japonica
Os09g0533400 Oryza sativa ssp. japonica
Peaxi162Scf00084g00410 Petunia axillaris
Peaxi162Scf00102g00735 Petunia axillaris
Peaxi162Scf00484g00210 Petunia axillaris
Peaxi162Scf00484g00213 Petunia axillaris
Peaxi162Scf01208g00006 Petunia axillaris
Peaxi162Scf01208g00007 Petunia axillaris
Peaxi162Scf01208g00145 Petunia axillaris
Peaxi162Scf01871g00003 Petunia axillaris
PGR042G1923 Punica granatum
PGR083G0370 Punica granatum
PGSC0003DMG400001842 Solanum tuberosum
Phvul.002G002900 Phaseolus vulgaris
Phvul.003G227400 Phaseolus vulgaris
Phvul.007G201200 Phaseolus vulgaris
Potri.001G148400 Populus trichocarpa
Potri.003G086000 Populus trichocarpa
Potri.005G017600 Populus trichocarpa
Potri.013G008900 Populus trichocarpa
Pp3c10_9020 Physcomitrium patens
Pp3c13_13900 Physcomitrium patens
Pp3c14_7840 Physcomitrium patens
Pp3c9_13420 Physcomitrium patens
PRCOL_00001361 Prasinoderma coloniale
PRCOL_00006160 Prasinoderma coloniale
Prupe.2G038600 Prunus persica
Prupe.5G050100 Prunus persica
Prupe.6G313300 Prunus persica
Psat0s3400g0080 Pisum sativum
Psat2g174080 Pisum sativum
Psat4g077480 Pisum sativum
Psat7g094080 Pisum sativum
PSO063G2884 Papaver somniferum
PSO063G4899 Papaver somniferum
PSO782G1742 Papaver somniferum
PSO782G3460 Papaver somniferum
QL03p013575 Quercus lobata
QL03p013604 Quercus lobata
QL03p013621 Quercus lobata
QL03p039871 Quercus lobata
QL03p039924 Quercus lobata
QL03p039928 Quercus lobata
QL03p039934 Quercus lobata
QL12p007705 Quercus lobata
RcHm_v2.0_Chr1g0325611 Rosa chinensis
RcHm_v2.0_Chr3g0457021 Rosa chinensis
RcHm_v2.0_Chr7g0207901 Rosa chinensis
Rhsim05G0131900 Rhododendron simsii
Rhsim07G0120800 Rhododendron simsii
Sabra01G0116800 Salix brachista
Sabra03G0055900 Salix brachista
Sabra13G0007500 Salix brachista
SalBow2G0724 Salvia bowleyana
Sc06g0005760 Simmondsia chinensis
Sc22g0000160 Simmondsia chinensis
Sc22g0001260 Simmondsia chinensis
Sed0006327 Sechium edule
Sed0009636 Sechium edule
SEGI_11007 Sequoiadendron giganteum
SEGI_15546 Sequoiadendron giganteum
SEGI_36392 Sequoiadendron giganteum
SEGI_38644 Sequoiadendron giganteum
SGA_v2.0_scaffold260G45844 Striga asiatica
SGA_v2.0_scaffold37G14611 Striga asiatica
SGA_v2.0_scaffold6G03172 Striga asiatica
SHI18059 Sapria himalayana
SMO199G0050 Selaginella moellendorffii
SMO358G0399 Selaginella moellendorffii
SMO358G0490 Selaginella moellendorffii
SMO358G0587 Selaginella moellendorffii
Solyc08g077440.3 Solanum lycopersicum
Solyc10g024320.2 Solanum lycopersicum
Sopen08g026030 Solanum pennellii
Sopen10g009280 Solanum pennellii
Sp1g32080 Schrenkiella parvula
Sp2g11850 Schrenkiella parvula
Sp2g21140 Schrenkiella parvula
TAR365G0568 Trochodendron aralioides
TAR365G1101 Trochodendron aralioides
TAR374G0655 Trochodendron aralioides
TAR374G0800 Trochodendron aralioides
TAR629G1078 Trochodendron aralioides
TAR633G2402 Trochodendron aralioides
TAR636G1039 Trochodendron aralioides
THA.LOC104798463 Tarenaya hassleriana
THA.LOC104806687 Tarenaya hassleriana
THA.LOC104820100 Tarenaya hassleriana
Thecc.03G236300 Theobroma cacao
Thecc.05G322700 Theobroma cacao
Thhalv10000767m.g Eutrema salsugineum
Thhalv10003617m.g Eutrema salsugineum
Thhalv10022093m.g Eutrema salsugineum
TPR.G19191 Trifolium pratense
TPR.G21036 Trifolium pratense
TPR.G22720 Trifolium pratense
TPR.G2620 Trifolium pratense
TPR.G39615 Trifolium pratense
TPR.G7216 Trifolium pratense
TWI56G1076 Tripterygium wilfordii
TWI60G0909 Tripterygium wilfordii
TWI81G0864 Tripterygium wilfordii
unitig_26.g9563 Utricularia gibba
unitig_744.g24435 Utricularia gibba
unitig_744.g24436 Utricularia gibba
vmacro14110 Vaccinium macrocarpon
vmacro19754 Vaccinium macrocarpon
VMungo0251G0931 Vigna mungo
VMungo0251G2141 Vigna mungo
VMungo0720G2265 Vigna mungo
VMungo0720G2441 Vigna mungo
Zm00001eb014570 Zea mays
Zm00001eb103510 Zea mays
Zm00001eb111810 Zea mays
Zm00001eb319680 Zea mays
Zm00001eb331350 Zea mays

User provided reference genes

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