Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p22150 Brassica napus
A02p35020 Brassica napus
A03p39250 Brassica napus
A06p41510 Brassica napus
A07p08830 Brassica napus
A09p03260 Brassica napus
A09p20530 Brassica napus
A09p20540 Brassica napus
A09p32310 Brassica napus
Aa31LG2G5530 Aethionema arabicum
Aa31LG2G5540 Aethionema arabicum
Aa31LG8G10020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2713 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis
Actinidia00085 Actinidia chinensis
Actinidia04437 Actinidia chinensis
Actinidia08873 Actinidia chinensis
Actinidia23468 Actinidia chinensis
Actinidia25572 Actinidia chinensis
Actinidia36807 Actinidia chinensis
Ah.03g147510 Amaranthus hybridus
Ah.03g147520 Amaranthus hybridus
Ah.07g204000 Amaranthus hybridus
Ah.08g219920 Amaranthus hybridus
AL3G38250 Arabidopsis lyrata
AL5G16160 Arabidopsis lyrata
AL5G16190 Arabidopsis lyrata
AL7G48620 Arabidopsis lyrata
Aqoxy1G01705 Aquilegia oxysepala
Aqoxy3G01555 Aquilegia oxysepala
Aqoxy5G03369 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.FI74S6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QB0UBR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea
AT3G23580 Arabidopsis thaliana
AT3G27050 Arabidopsis thaliana
AT3G27060 Arabidopsis thaliana
ATR0561G117 Amborella trichopoda
ATR0561G272 Amborella trichopoda
ATR0626G204 Amborella trichopoda
Atru.chr1.718 Acer truncatum
Atru.chr11.741 Acer truncatum
Atru.chr4.2584 Acer truncatum
Atru.chr6.2574 Acer truncatum
AUR62002639 Chenopodium quinoa
AUR62003517 Chenopodium quinoa
AUR62003518 Chenopodium quinoa
AUR62017829 Chenopodium quinoa
AUR62017830 Chenopodium quinoa
AUR62030054 Chenopodium quinoa
BcaB03g14173 Brassica carinata
BcaB04g19424 Brassica carinata
BcaB06g26506 Brassica carinata
BcaB07g30191 Brassica carinata
BcaC01g00129 Brassica carinata
BcaC01g00130 Brassica carinata
BcaC03g17421 Brassica carinata
BcaC04g23914 Brassica carinata
BcaC05g27001 Brassica carinata
BcaC06g31022 Brassica carinata
BcaC06g33861 Brassica carinata
BcaC06g33862 Brassica carinata
BcaC06g35540 Brassica carinata
BolC1t03976H Brassica oleracea
BolC2t11438H Brassica oleracea
BolC3t19867H Brassica oleracea
BolC3t19868H Brassica oleracea
BolC7t41864H Brassica oleracea
BolC7t44130H Brassica oleracea
BolC9t53267H Brassica oleracea
BraA01t03279Z Brassica rapa
BraA02t08511Z Brassica rapa
BraA03t10317Z Brassica rapa
BraA04t16345Z Brassica rapa
BraA04t16475Z Brassica rapa
BraA06t27076Z Brassica rapa
BraA07t28674Z Brassica rapa
BraA09t35964Z Brassica rapa
C01p40170 Brassica napus
C02p53700 Brassica napus
C03p76120 Brassica napus
C03p76130 Brassica napus
C07p13690 Brassica napus
C07p36140 Brassica napus
C09p03460 Brassica napus
CAN.G1170.1 Capsicum annuum
CAN.G473.101 Capsicum annuum
CANSAT64G1297 Cannabis sativa
CANSAT64G1566 Cannabis sativa
CANSAT78G1899 Cannabis sativa
CARHR099500 Cardamine hirsuta
CARHR148270 Cardamine hirsuta
CARHR148280 Cardamine hirsuta
Carub.0003s2379 Capsella rubella
Carub.0005s0529 Capsella rubella
Carub.0005s0530 Capsella rubella
Ca_02796_v3 Cicer arietinum L.
Ca_21587_v3 Cicer arietinum L.
Ca_22817_v3 Cicer arietinum L.
Ca_31323_v3 Cicer arietinum L.
CBR_g41058 Chara braunii
CBR_g41068 Chara braunii
CBR_g762 Chara braunii
Cc01_g07060 Coffea canephora
Cc02_g26010 Coffea canephora
Cc03_g03020 Coffea canephora
Cc03_g08570 Coffea canephora
Cc06_g00960 Coffea canephora
Cc06_g21830 Coffea canephora
Cc07_g00850 Coffea canephora
Cc07_g00860 Coffea canephora
CDE02G2210 Ceratophyllum demersum
CDE02G3489 Ceratophyllum demersum
CDE02G4046 Ceratophyllum demersum
CDE05G0537 Ceratophyllum demersum
CDE05G2056 Ceratophyllum demersum
CDE05G3089 Ceratophyllum demersum
Cfa007225 Carpinus fangiana
Cfa007226 Carpinus fangiana
Cfa010846 Carpinus fangiana
Cfa015572 Carpinus fangiana
Cfa023736 Carpinus fangiana
Ciclev10005323m.g Citrus clementina
Ciclev10017089m.g Citrus clementina
Ciclev10026060m.g Citrus clementina
Ciclev10032088m.g Citrus clementina
CiPaw.02G090900 Carya illinoinensis
CiPaw.03G055800 Carya illinoinensis
CiPaw.04G036700 Carya illinoinensis
ClCG05G012830 Citrullus lanatus
ClCG05G013550 Citrullus lanatus
Cpa.g.c43776 Carica papaya
Cpa.g.sc16.35 Carica papaya
Cpa.g.sc171.11 Carica papaya
Cpa.g.sc171.12 Carica papaya
Cre01.g049050 Chlamydomonas reinhardtii
Cre12.g491050 Chlamydomonas reinhardtii
Cre12.g509400 Chlamydomonas reinhardtii
CsaV3_3G026980 Cucumis sativus L.
CsaV3_3G027630 Cucumis sativus L.
CSS0004965 Camellia sinensis var. sinensis
CSS0006254 Camellia sinensis var. sinensis
CSS0006594 Camellia sinensis var. sinensis
CSS0009369 Camellia sinensis var. sinensis
CSS0025256 Camellia sinensis var. sinensis
CSS0029381 Camellia sinensis var. sinensis
DCAR_003481 Daucus carota
DCAR_011319 Daucus carota
DCAR_021794 Daucus carota
DCAR_021795 Daucus carota
DCAR_027145 Daucus carota
Dinv11173 Davidia involucrata
Dinv23147 Davidia involucrata
Dinv25658 Davidia involucrata
Dinv33335 Davidia involucrata
Dinv38380 Davidia involucrata
Dinv38381 Davidia involucrata
Dinv44475 Davidia involucrata
Duzib147G0921 Durio zibethinus
Duzib147G1300 Durio zibethinus
Duzib187G1921 Durio zibethinus
Duzib212G0509 Durio zibethinus
Duzib264G0869 Durio zibethinus
ECA232G3413 Erigeron canadensis
ECA234G1345 Erigeron canadensis
ECA246G1005 Erigeron canadensis
EL10Ac3g06326 Beta vulgaris
Eucgr.B01150 Eucalyptus grandis
Eucgr.I01645 Eucalyptus grandis
Eucgr.I01646 Eucalyptus grandis
FAN02G0503 Fragaria x ananassa
FAN02G2412 Fragaria x ananassa
FAN05G4256 Fragaria x ananassa
FAN07G2299 Fragaria x ananassa
FAN09G1657 Fragaria x ananassa
FAN12G4017 Fragaria x ananassa
FAN14G1551 Fragaria x ananassa
FAN17G0831 Fragaria x ananassa
FAN22G0351 Fragaria x ananassa
FAN22G1328 Fragaria x ananassa
FAN22G2143 Fragaria x ananassa
FvH4_4g14370 Fragaria vesca
FvH4_6g53560 Fragaria vesca
FvH4_6g53561 Fragaria vesca
Glyma.03G195600 Glycine max
Glyma.07G256200 Glycine max
Glyma.16G056200 Glycine max
Glyma.16G056300 Glycine max
Glyma.19G091400 Glycine max
Glyma.19G091500 Glycine max
Gohir.A02G028500 Gossypium hirsutum
Gohir.A07G228500 Gossypium hirsutum
Gohir.A09G036000 Gossypium hirsutum
Gohir.A10G072000 Gossypium hirsutum
Gohir.D02G036200 Gossypium hirsutum
Gohir.D07G235600 Gossypium hirsutum
Gohir.D09G037000 Gossypium hirsutum
Gohir.D10G079100 Gossypium hirsutum
Gorai.001G271500 Gossypium raimondii
Gorai.005G040300 Gossypium raimondii
Gorai.006G042300 Gossypium raimondii
Gorai.011G086100 Gossypium raimondii
GSVIVG01006804001 Vitis vinifera
GSVIVG01017878001 Vitis vinifera
GSVIVG01024569001 Vitis vinifera
GSVIVG01033089001 Vitis vinifera
GSVIVG01033090001 Vitis vinifera
HanXRQChr12g0359421 Helianthus annuus
HanXRQChr14g0450761 Helianthus annuus
HanXRQChr15g0474901 Helianthus annuus
HanXRQChr17g0550091 Helianthus annuus
Haze_00975 Corylus avellana
Haze_03111 Corylus avellana
Haze_03112 Corylus avellana
Haze_14878 Corylus avellana
Haze_14879 Corylus avellana
Haze_14955 Corylus avellana
Haze_26201 Corylus avellana
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla
Hma1.2p1_1644F.1_g295310 Hydrangea macrophylla
HPP92_001290 Vanilla planifolia
HPP92_009721 Vanilla planifolia
HPP92_024727 Vanilla planifolia
HPP92_024732 Vanilla planifolia
HPP92_024733 Vanilla planifolia
HPP92_024737 Vanilla planifolia
HPP92_024740 Vanilla planifolia
HPP92_024744 Vanilla planifolia
HPP92_024747 Vanilla planifolia
HPP92_024748 Vanilla planifolia
HPP92_024749 Vanilla planifolia
HPP92_024756 Vanilla planifolia
Hund12206 Selenicereus undatus
Hund12739 Selenicereus undatus
Lalb_Chr04g0252241 Lupinus albus
Lalb_Chr07g0177361 Lupinus albus
Lalb_Chr07g0177371 Lupinus albus
Lalb_Chr10g0103341 Lupinus albus
Lalb_Chr22g0360361 Lupinus albus
Lj1g0000179 Lotus japonicus
Lj1g0001542 Lotus japonicus
Lj1g0008287 Lotus japonicus
Lj1g0009504 Lotus japonicus
Lj1g0026310 Lotus japonicus
Lj4g0024440 Lotus japonicus
Lj7C610G7 Lonicera japonica
Lju41C53T0 Lonicera japonica
Lju41C53T3 Lonicera japonica
Lsat_1_v5_gn_0_26040 Lactuca sativa
Lsat_1_v5_gn_0_26060 Lactuca sativa
Lsat_1_v5_gn_2_93100 Lactuca sativa
Lsat_1_v5_gn_3_84200 Lactuca sativa
Lsat_1_v5_gn_5_77661 Lactuca sativa
Manes.03G185700 Manihot esculenta
Manes.15G161200 Manihot esculenta
Manes.17G103000 Manihot esculenta
Mapoly0036s0151 Marchantia polymorpha
MBI07_g16950_MAGBIO Magnolia biondii
MBI11_g05328_MAGBIO Magnolia biondii
MBI11_g44423_MAGBIO Magnolia biondii
MBI17_g11993_MAGBIO Magnolia biondii
MCO15G523 Micromonas commoda
MCO16G486 Micromonas commoda
MD00G1139000 Malus domestica
MD08G1130900 Malus domestica
MD09G1010400 Malus domestica
MD09G1010500 Malus domestica
MD10G1115700 Malus domestica
MD13G1182000 Malus domestica
MD16G1182500 Malus domestica
MD16G1254400 Malus domestica
Medtr0268s0080 Medicago truncatula
Medtr1g050472 Medicago truncatula
Medtr1g051110 Medicago truncatula
Medtr4g117370 Medicago truncatula
Medtr6g005270 Medicago truncatula
Medtr7g029105 Medicago truncatula
Medtr7g029110 Medicago truncatula
Medtr8g469010 Medicago truncatula
MELO3C014795.2 Cucumis melo
MELO3C014890.2 Cucumis melo
Migut.A01175 Erythranthe guttata
Migut.F00060 Erythranthe guttata
Migut.F00063 Erythranthe guttata
Migut.F01464 Erythranthe guttata
Migut.K01465 Erythranthe guttata
Migut.N00146 Erythranthe guttata
Migut.O00782 Erythranthe guttata
MSTRG.24097 Avicennia marina
MSTRG.24758 Avicennia marina
MSTRG.3074 Avicennia marina
Nitab4.5_0000525g0030 Nicotiana tabacum
Nitab4.5_0000559g0390 Nicotiana tabacum
Nitab4.5_0000732g0160 Nicotiana tabacum
Nitab4.5_0002050g0120 Nicotiana tabacum
Nitab4.5_0003162g0030 Nicotiana tabacum
Nitab4.5_0003162g0040 Nicotiana tabacum
Nitab4.5_0005161g0070 Nicotiana tabacum
Nitab4.5_0010204g0020 Nicotiana tabacum
Nn3g16459 Nelumbo nucifera
Nn3g16461 Nelumbo nucifera
Nn4g26165 Nelumbo nucifera
Oeu005096.1 Olea europaea
Oeu010300.3 Olea europaea
Oeu011751.1 Olea europaea
Oeu035224.1 Olea europaea
Os06g0127900 Oryza sativa ssp. japonica
Os06g0257450 Oryza sativa ssp. japonica
Os11g0488600 Oryza sativa ssp. japonica
Peaxi162Scf00095g01014 Petunia axillaris
Peaxi162Scf00166g00078 Petunia axillaris
Peaxi162Scf00420g00510 Petunia axillaris
Peaxi162Scf00700g00030 Petunia axillaris
PGR031G0515 Punica granatum
PGR142G2335 Punica granatum
PGR142G3591 Punica granatum
PGSC0003DMG400020253 Solanum tuberosum
PGSC0003DMG400022915 Solanum tuberosum
Phvul.001G093200 Phaseolus vulgaris
Phvul.001G093300 Phaseolus vulgaris
Phvul.001G190100 Phaseolus vulgaris
Potri.001G329600 Populus trichocarpa
Potri.001G329700 Populus trichocarpa
Potri.008G201500 Populus trichocarpa
Potri.017G063900 Populus trichocarpa
Pp3c14_4200 Physcomitrium patens
Pp3c1_27230 Physcomitrium patens
Pp3c25_1550 Physcomitrium patens
Pp3c5_4530 Physcomitrium patens
Pp3c6_23160 Physcomitrium patens
PRCOL_00004007 Prasinoderma coloniale
PRCOL_00006137 Prasinoderma coloniale
Prupe.1G149900 Prunus persica
Prupe.2G066500 Prunus persica
Prupe.3G306600 Prunus persica
Prupe.3G306700 Prunus persica
Psat1g140440 Pisum sativum
Psat3g174720 Pisum sativum
Psat4g030880 Pisum sativum
PSO017G5378 Papaver somniferum
PSO017G6148 Papaver somniferum
PSO170G1751 Papaver somniferum
PSO478G4377 Papaver somniferum
PSO478G5312 Papaver somniferum
QL02p071311 Quercus lobata
QL02p071314 Quercus lobata
QL06p005493 Quercus lobata
QL06p005505 Quercus lobata
RcHm_v2.0_Chr1g0381081 Rosa chinensis
RcHm_v2.0_Chr2g0175591 Rosa chinensis
RcHm_v2.0_Chr2g0175601 Rosa chinensis
RcHm_v2.0_Chr2g0175681 Rosa chinensis
RcHm_v2.0_Chr4g0418551 Rosa chinensis
RcHm_v2.0_Chr5g0007381 Rosa chinensis
RcHm_v2.0_Chr5g0009181 Rosa chinensis
Rhsim04G0207800 Rhododendron simsii
Rhsim08G0042700 Rhododendron simsii
Rhsim12G0174800 Rhododendron simsii
Sabra08G0160000 Salix brachista
Sabra10G0011600 Salix brachista
Sabra12G0045500 Salix brachista
Sabra16G0211000 Salix brachista
Sabra17G0057700 Salix brachista
SalBow4G0299 Salvia bowleyana
SalBow4G1795 Salvia bowleyana
SalBow5G2611 Salvia bowleyana
SalBow5G4253 Salvia bowleyana
SalBow7G4746 Salvia bowleyana
Sc15g0002740 Simmondsia chinensis
Sc23g0005680 Simmondsia chinensis
Sc25g0004500 Simmondsia chinensis
Sed0003591 Sechium edule
Sed0020252 Sechium edule
Sed0027358 Sechium edule
SEGI_01469 Sequoiadendron giganteum
SEGI_04799 Sequoiadendron giganteum
SEGI_11507 Sequoiadendron giganteum
SEGI_16175 Sequoiadendron giganteum
SEGI_16262 Sequoiadendron giganteum
SEGI_16874 Sequoiadendron giganteum
SEGI_21368 Sequoiadendron giganteum
SEGI_29258 Sequoiadendron giganteum
SEGI_35093 Sequoiadendron giganteum
SEGI_41239 Sequoiadendron giganteum
SGA_v2.0_scaffold154G37175 Striga asiatica
SGA_v2.0_scaffold166G38384 Striga asiatica
SGA_v2.0_scaffold253G45194 Striga asiatica
SGA_v2.0_scaffold44G16915 Striga asiatica
SHI04043 Sapria himalayana
SHI05331 Sapria himalayana
SHI16678 Sapria himalayana
SHI16679 Sapria himalayana
SHI20111 Sapria himalayana
SHI21293 Sapria himalayana
SHI22356 Sapria himalayana
SMO119G0238 Selaginella moellendorffii
SMO145G0023 Selaginella moellendorffii
Solyc01g080210.3 Solanum lycopersicum
Solyc02g094160.1 Solanum lycopersicum
Sopen01g031990 Solanum pennellii
Sopen02g038790 Solanum pennellii
Sp2g16180 Schrenkiella parvula
Sp2g16190 Schrenkiella parvula
Sp3g21230 Schrenkiella parvula
TAR362G0315 Trochodendron aralioides
TAR371G0618 Trochodendron aralioides
TAR374G0383 Trochodendron aralioides
TAR381G1707 Trochodendron aralioides
TAR622G0082 Trochodendron aralioides
TAR622G1053 Trochodendron aralioides
TAR633G2138 Trochodendron aralioides
THA.LOC104805326 Tarenaya hassleriana
THA.LOC104822508 Tarenaya hassleriana
THA.LOC104823984 Tarenaya hassleriana
THA.LOC104825624 Tarenaya hassleriana
Thecc.04G036600 Theobroma cacao
Thecc.04G036700 Theobroma cacao
Thecc.04G220500 Theobroma cacao
Thhalv10004569m.g Eutrema salsugineum
Thhalv10004992m.g Eutrema salsugineum
Thhalv10021074m.g Eutrema salsugineum
TPR.G20113 Trifolium pratense
TPR.G27887 Trifolium pratense
TPR.G38286 Trifolium pratense
TWI32G0857 Tripterygium wilfordii
TWI34G0477 Tripterygium wilfordii
TWI34G1810 Tripterygium wilfordii
TWI53G2076 Tripterygium wilfordii
TWI60G0015 Tripterygium wilfordii
unitig_60.g25408 Utricularia gibba
unitig_748.g7073 Utricularia gibba
unitig_748.g8011 Utricularia gibba
vmacro08268 Vaccinium macrocarpon
vmacro18348 Vaccinium macrocarpon
VMungo1215G0915 Vigna mungo
VMungo1383G2039 Vigna mungo
VMungo1383G2945 Vigna mungo
VMungo1383G3091 Vigna mungo
Zm00001eb078510 Zea mays
Zm00001eb112760 Zea mays
Zm00001eb280680 Zea mays
Zm00001eb379830 Zea mays

User provided reference genes

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