Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p42730 Brassica napus
A03p57700 Brassica napus
A03p64700 Brassica napus
A06p11290 Brassica napus
A08p20230 Brassica napus
A10p00600 Brassica napus
Aa31LG1G10660 Aethionema arabicum
Aa31sc57G100 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1190 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1198 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2170__2171 Anthoceros agrestis
Actinidia01731 Actinidia chinensis
Actinidia10137 Actinidia chinensis
Actinidia18216 Actinidia chinensis
Actinidia20240 Actinidia chinensis
Actinidia20938 Actinidia chinensis
Actinidia20939 Actinidia chinensis
Actinidia28563 Actinidia chinensis
Actinidia28564 Actinidia chinensis
Actinidia29991 Actinidia chinensis
Ah.01g020470 Amaranthus hybridus
Ah.05g169300 Amaranthus hybridus
Ah.14g084360 Amaranthus hybridus
AL1G11130 Arabidopsis lyrata
AL1G27380 Arabidopsis lyrata
AL7G24530 Arabidopsis lyrata
Aqoxy5G04242 Aquilegia oxysepala
Aqoxy7G02377 Aquilegia oxysepala
Aqoxy7G03611 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0N5Z96 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2TY6Z9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.369WQ5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.56DXVT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5A67KA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.759A9K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CF5AFL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G68EH0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IQ8CLR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JY1AQN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MI82BM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R7C5PV Arachis hypogaea
AT1G01320 Arabidopsis thaliana
AT1G15290 Arabidopsis thaliana
AT4G28080 Arabidopsis thaliana
ATR0580G237 Amborella trichopoda
ATR0602G163 Amborella trichopoda
Atru.chr1.2876 Acer truncatum
Atru.chr5.663 Acer truncatum
Atru.chr5.664 Acer truncatum
Atru.chr5.665 Acer truncatum
Atru.chr5.666 Acer truncatum
Atru.chr5.667 Acer truncatum
Atru.chr7.368 Acer truncatum
AUR62004489 Chenopodium quinoa
AUR62011502 Chenopodium quinoa
AUR62016318 Chenopodium quinoa
AUR62023464 Chenopodium quinoa
AUR62025375 Chenopodium quinoa
AUR62028376 Chenopodium quinoa
BcaB03g12556 Brassica carinata
BcaB03g13573 Brassica carinata
BcaB07g33829 Brassica carinata
BcaC03g18205 Brassica carinata
BcaC04g19577 Brassica carinata
BcaC05g25466 Brassica carinata
BcaC06g32647 Brassica carinata
BcaC07g38314 Brassica carinata
BcaC07g41478 Brassica carinata
BcaC09g49038 Brassica carinata
BolC5t28851H Brassica oleracea
BolC5t30079H Brassica oleracea
BolC5t34097H Brassica oleracea
BolC7t46069H Brassica oleracea
BolC8t48737H Brassica oleracea
BraA03t14837Z Brassica rapa
BraA06t24309Z Brassica rapa
BraA08t33982Z Brassica rapa
BraA10t42338Z Brassica rapa
C01p43280 Brassica napus
C05p00630 Brassica napus
C05p13420 Brassica napus
C07p26330 Brassica napus
C07p55910 Brassica napus
C08p10640 Brassica napus
CAN.G1190.19 Capsicum annuum
CAN.G1490.21 Capsicum annuum
CAN.G986.5 Capsicum annuum
CANSAT11G0702 Cannabis sativa
CANSAT56G0571 Cannabis sativa
CANSAT56G1961 Cannabis sativa
CARHR001120 Cardamine hirsuta
CARHR015820 Cardamine hirsuta
CARHR235780 Cardamine hirsuta
Carub.0001s0090 Capsella rubella
Carub.0001s1505 Capsella rubella
Carub.0007s1270 Capsella rubella
Ca_12520_v3 Cicer arietinum L.
Ca_23537_v3 Cicer arietinum L.
CBR_g37662 Chara braunii
Cc00_g29720 Coffea canephora
Cc02_g28850 Coffea canephora
Cc02_g39330 Coffea canephora
Cc02_g39340 Coffea canephora
Cc04_g04580 Coffea canephora
Cc06_g14470 Coffea canephora
Cc11_g01990 Coffea canephora
CDE02G3153 Ceratophyllum demersum
CDE07G1943 Ceratophyllum demersum
CDE08G1208 Ceratophyllum demersum
Cfa001943 Carpinus fangiana
Cfa003801 Carpinus fangiana
Cfa020779 Carpinus fangiana
Ciclev10007232m.g Citrus clementina
Ciclev10018452m.g Citrus clementina
Ciclev10024689m.g Citrus clementina
Ciclev10024692m.g Citrus clementina
Ciclev10024693m.g Citrus clementina
Ciclev10024698m.g Citrus clementina
Ciclev10024894m.g Citrus clementina
Ciclev10024937m.g Citrus clementina
Ciclev10025019m.g Citrus clementina
Ciclev10027013m.g Citrus clementina
Ciclev10027193m.g Citrus clementina
Ciclev10027469m.g Citrus clementina
Ciclev10031673m.g Citrus clementina
CiPaw.01G076500 Carya illinoinensis
CiPaw.01G249900 Carya illinoinensis
CiPaw.15G164000 Carya illinoinensis
ClCG06G001240 Citrullus lanatus
ClCG06G012670 Citrullus lanatus
ClCG09G003050 Citrullus lanatus
COL.COLO4_06289 Corchorus olitorius
COL.COLO4_11897 Corchorus olitorius
COL.COLO4_36574 Corchorus olitorius
Cpa.g.sc199.12 Carica papaya
Cpa.g.sc96.11 Carica papaya
Cpa.g.sc96.12 Carica papaya
CsaV3_1G029220 Cucumis sativus L.
CsaV3_6G007160 Cucumis sativus L.
CsaV3_7G032240 Cucumis sativus L.
CSS0018555 Camellia sinensis var. sinensis
CSS0021466 Camellia sinensis var. sinensis
CSS0022005 Camellia sinensis var. sinensis
CSS0022600 Camellia sinensis var. sinensis
CSS0023865 Camellia sinensis var. sinensis
CSS0035872 Camellia sinensis var. sinensis
CSS0049873 Camellia sinensis var. sinensis
DCAR_005387 Daucus carota
DCAR_016272 Daucus carota
DCAR_020092 Daucus carota
DCAR_021354 Daucus carota
DCAR_025251 Daucus carota
Dinv30626 Davidia involucrata
Dinv30627 Davidia involucrata
Dinv35115 Davidia involucrata
Dinv37731 Davidia involucrata
Dinv38136 Davidia involucrata
Dinv42815 Davidia involucrata
Dinv43285 Davidia involucrata
Duzib133G1296 Durio zibethinus
Duzib160G0155 Durio zibethinus
Duzib168G0337 Durio zibethinus
ECA170G0003 Erigeron canadensis
ECA232G4532 Erigeron canadensis
ECA234G1663 Erigeron canadensis
ECA236G1465 Erigeron canadensis
ECA236G3083 Erigeron canadensis
EL10Ac1g00272 Beta vulgaris
EL10Ac3g06714 Beta vulgaris
EL10Ac8g18904 Beta vulgaris
EL10Ac9g21887 Beta vulgaris
Eucgr.C00239 Eucalyptus grandis
Eucgr.D02374 Eucalyptus grandis
Eucgr.F03906 Eucalyptus grandis
FAN01G2109 Fragaria x ananassa
FAN02G0271 Fragaria x ananassa
FAN03G3144 Fragaria x ananassa
FAN05G2344 Fragaria x ananassa
FAN06G3445 Fragaria x ananassa
FAN06G3722 Fragaria x ananassa
FAN10G0149 Fragaria x ananassa
FAN10G2771 Fragaria x ananassa
FAN11G3147 Fragaria x ananassa
FAN14G5647 Fragaria x ananassa
FAN16G1655 Fragaria x ananassa
FAN21G2207 Fragaria x ananassa
FAN25G2837 Fragaria x ananassa
FvH4_3g24640 Fragaria vesca
FvH4_4g00940 Fragaria vesca
FvH4_6g29390 Fragaria vesca
FvH4_7g16420 Fragaria vesca
Glyma.04G156200 Glycine max
Glyma.06G223500 Glycine max
Glyma.07G028800 Glycine max
Glyma.07G055900 Glycine max
Glyma.08G214000 Glycine max
Glyma.16G024600 Glycine max
Gohir.A04G058100 Gossypium hirsutum
Gohir.A06G115500 Gossypium hirsutum
Gohir.A06G184100 Gossypium hirsutum
Gohir.A08G125300 Gossypium hirsutum
Gohir.A12G112100 Gossypium hirsutum
Gohir.D04G088100 Gossypium hirsutum
Gohir.D06G120100 Gossypium hirsutum
Gohir.D06G191100 Gossypium hirsutum
Gohir.D08G146300 Gossypium hirsutum
Gohir.D12G115700 Gossypium hirsutum
Gorai.004G151800 Gossypium raimondii
Gorai.008G125200 Gossypium raimondii
Gorai.010G138100 Gossypium raimondii
Gorai.010G224200 Gossypium raimondii
Gorai.012G098300 Gossypium raimondii
GSVIVG01006614001 Vitis vinifera
GSVIVG01016746001 Vitis vinifera
GSVIVG01016747001 Vitis vinifera
GSVIVG01017381001 Vitis vinifera
GSVIVG01019289001 Vitis vinifera
GSVIVG01021729001 Vitis vinifera
GSVIVG01023693001 Vitis vinifera
GSVIVG01023694001 Vitis vinifera
GSVIVG01023695001 Vitis vinifera
GSVIVG01027120001 Vitis vinifera
GSVIVG01036092001 Vitis vinifera
HanXRQChr04g0120181 Helianthus annuus
HanXRQChr05g0153241 Helianthus annuus
HanXRQChr09g0274771 Helianthus annuus
HanXRQChr12g0357871 Helianthus annuus
Haze_15657 Corylus avellana
Haze_16583 Corylus avellana
Haze_19119 Corylus avellana
Haze_19123 Corylus avellana
Hma1.2p1_0017F.1_g011330 Hydrangea macrophylla
Hma1.2p1_0017F.1_g011370 Hydrangea macrophylla
Hma1.2p1_0017F.1_g011380 Hydrangea macrophylla
Hma1.2p1_0028F.1_g017780 Hydrangea macrophylla
Hma1.2p1_0028F.1_g017800 Hydrangea macrophylla
Hma1.2p1_0242F.1_g100760 Hydrangea macrophylla
Hma1.2p1_0295F.1_g116690 Hydrangea macrophylla
HPP92_005280 Vanilla planifolia
HPP92_015355 Vanilla planifolia
Hund03300 Selenicereus undatus
Hund06549 Selenicereus undatus
Hund16711 Selenicereus undatus
Hund27200 Selenicereus undatus
Lalb_Chr04g0262321 Lupinus albus
Lalb_Chr08g0234321 Lupinus albus
Lalb_Chr15g0076271 Lupinus albus
Lalb_Chr18g0044441 Lupinus albus
Lalb_Chr18g0044451 Lupinus albus
Lalb_Chr22g0350811 Lupinus albus
Lalb_Chr23g0275611 Lupinus albus
Lj3g0006224 Lotus japonicus
Lj3g0008042 Lotus japonicus
Lj5C75G7 Lonicera japonica
Lj6g0019418 Lotus japonicus
Lj7C464G5 Lonicera japonica
Lj9A498T42 Lonicera japonica
Lj9C498G15 Lonicera japonica
Lj9C598G3 Lonicera japonica
Lj9C722G5 Lonicera japonica
Lj9C722T0 Lonicera japonica
Lsat_1_v5_gn_1_115321 Lactuca sativa
Lsat_1_v5_gn_4_87381 Lactuca sativa
Lsat_1_v5_gn_5_88580 Lactuca sativa
Lsat_1_v5_gn_7_1141 Lactuca sativa
Lsat_1_v5_gn_8_64840 Lactuca sativa
Lsat_1_v5_gn_9_115840 Lactuca sativa
Lsat_1_v5_gn_9_28580 Lactuca sativa
Manes.04G110600 Manihot esculenta
Manes.05G023000 Manihot esculenta
Manes.06G032200 Manihot esculenta
Manes.11G058800 Manihot esculenta
MBI06_g08471_MAGBIO Magnolia biondii
MBI14_g16444_MAGBIO Magnolia biondii
MBI15_g26071_MAGBIO Magnolia biondii
MBI15_g34219_MAGBIO Magnolia biondii
MD01G1080500 Malus domestica
MD07G1149400 Malus domestica
MD16G1258600 Malus domestica
MD17G1215200 Malus domestica
Medtr4g009960 Medicago truncatula
Medtr6g052190 Medicago truncatula
Medtr8g027685 Medicago truncatula
MELO3C010197.2 Cucumis melo
MELO3C022410.2 Cucumis melo
MELO3C023435.2 Cucumis melo
Migut.B01871 Erythranthe guttata
Migut.I00746 Erythranthe guttata
Migut.K00300 Erythranthe guttata
MSTRG.11154 Avicennia marina
MSTRG.22757 Avicennia marina
Nitab4.5_0000142g0490 Nicotiana tabacum
Nitab4.5_0000373g0150 Nicotiana tabacum
Nitab4.5_0002326g0150 Nicotiana tabacum
Nitab4.5_0002809g0030 Nicotiana tabacum
Nitab4.5_0002809g0040 Nicotiana tabacum
Nitab4.5_0003759g0040 Nicotiana tabacum
Nitab4.5_0005989g0010 Nicotiana tabacum
Nitab4.5_0007970g0020 Nicotiana tabacum
Nn1g00227 Nelumbo nucifera
Nn2g12151 Nelumbo nucifera
Nn8g39585 Nelumbo nucifera
Nn8g40115 Nelumbo nucifera
Oeu010084.1 Olea europaea
Oeu010281.1 Olea europaea
Oeu035106.2 Olea europaea
Oeu036006.1 Olea europaea
Os02g0255700 Oryza sativa ssp. japonica
Os04g0645100 Oryza sativa ssp. japonica
Os07g0421866 Oryza sativa ssp. japonica
Os07g0422000 Oryza sativa ssp. japonica
Peaxi162Scf00038g00731 Petunia axillaris
Peaxi162Scf00207g00538 Petunia axillaris
Peaxi162Scf00716g00016 Petunia axillaris
Peaxi162Scf00786g00128 Petunia axillaris
PGR031G0972 Punica granatum
PGR102G0603 Punica granatum
PGR114G0003 Punica granatum
PGR142G1728 Punica granatum
PGSC0003DMG400000108 Solanum tuberosum
PGSC0003DMG400007038 Solanum tuberosum
PGSC0003DMG400011213 Solanum tuberosum
PGSC0003DMG400028530 Solanum tuberosum
Phvul.006G113000 Phaseolus vulgaris
Phvul.009G195600 Phaseolus vulgaris
Phvul.010G114100 Phaseolus vulgaris
Phvul.010G157200 Phaseolus vulgaris
Potri.002G170900 Populus trichocarpa
Potri.003G031000 Populus trichocarpa
Potri.006G180100 Populus trichocarpa
Potri.014G098600 Populus trichocarpa
Potri.018G102500 Populus trichocarpa
Pp3c24_6750 Physcomitrium patens
Pp3c8_14980 Physcomitrium patens
PRCOL_00004559 Prasinoderma coloniale
Prupe.1G101800 Prunus persica
Prupe.2G188000 Prunus persica
Prupe.3G090800 Prunus persica
Psat0s5953g0080 Pisum sativum
Psat1g023440 Pisum sativum
Psat4g161040 Pisum sativum
Psat5g141640 Pisum sativum
Psat7g127840 Pisum sativum
Psat7g127880 Pisum sativum
Psat7g257480 Pisum sativum
PSO017G0796 Papaver somniferum
PSO017G3681 Papaver somniferum
PSO063G3385 Papaver somniferum
PSO170G0943 Papaver somniferum
PSO170G5166 Papaver somniferum
PSO170G6700 Papaver somniferum
QL02p094245 Quercus lobata
QL04p060935 Quercus lobata
QL05p032089 Quercus lobata
QL10p059240 Quercus lobata
RcHm_v2.0_Chr1g0359431 Rosa chinensis
RcHm_v2.0_Chr1g0359451 Rosa chinensis
RcHm_v2.0_Chr2g0134791 Rosa chinensis
RcHm_v2.0_Chr4g0405441 Rosa chinensis
RcHm_v2.0_Chr7g0224021 Rosa chinensis
Rhsim01G0021700 Rhododendron simsii
Rhsim01G0021900 Rhododendron simsii
Rhsim01G0022400 Rhododendron simsii
Rhsim01G0023400 Rhododendron simsii
Rhsim06G0099700 Rhododendron simsii
Rhsim07G0004400 Rhododendron simsii
Rhsim07G0107600 Rhododendron simsii
Rhsim08G0211300 Rhododendron simsii
Sabra02G0141600 Salix brachista
Sabra06G0137100 Salix brachista
Sabra14G0072200 Salix brachista
Sabra18G0088100 Salix brachista
SalBow1G1816 Salvia bowleyana
SalBow3G2381 Salvia bowleyana
SalBow6G5231 Salvia bowleyana
Sc01g0002710 Simmondsia chinensis
Sc10g0006030 Simmondsia chinensis
Sc14g0001000 Simmondsia chinensis
Sed0004722 Sechium edule
Sed0009348 Sechium edule
Sed0024441 Sechium edule
Sed0026790 Sechium edule
SEGI_20336 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10700 Striga asiatica
SGA_v2.0_scaffold265G46076 Striga asiatica
SGA_v2.0_scaffold363G49932 Striga asiatica
SGA_v2.0_scaffold37G14754 Striga asiatica
SGA_v2.0_scaffold5G02720 Striga asiatica
SMO137G0009 Selaginella moellendorffii
SMO143G0259 Selaginella moellendorffii
Solyc01g095900.4 Solanum lycopersicum
Solyc05g050630.4 Solanum lycopersicum
Solyc06g068230.4 Solanum lycopersicum
Solyc07g006030.4 Solanum lycopersicum
Sopen01g039640 Solanum pennellii
Sopen05g029050 Solanum pennellii
Sopen06g025510 Solanum pennellii
Sopen07g002170 Solanum pennellii
Sp1g00960 Schrenkiella parvula
Sp1g13610 Schrenkiella parvula
Sp7g26030 Schrenkiella parvula
TAR024G0001 Trochodendron aralioides
TAR026G0001 Trochodendron aralioides
TAR026G0002 Trochodendron aralioides
TAR383G0823 Trochodendron aralioides
TAR625G0086 Trochodendron aralioides
TAR625G0762 Trochodendron aralioides
TAR626G1668 Trochodendron aralioides
TAR629G3253 Trochodendron aralioides
TAR636G0220 Trochodendron aralioides
TAR636G1701 Trochodendron aralioides
TAR636G3487 Trochodendron aralioides
THA.LOC104800437 Tarenaya hassleriana
THA.LOC104801374 Tarenaya hassleriana
THA.LOC104811829 Tarenaya hassleriana
Thecc.01G342900 Theobroma cacao
Thecc.06G031200 Theobroma cacao
Thecc.09G154400 Theobroma cacao
Thhalv10006538m.g Eutrema salsugineum
Thhalv10006547m.g Eutrema salsugineum
Thhalv10024196m.g Eutrema salsugineum
TPR.G15354 Trifolium pratense
TPR.G22646 Trifolium pratense
TPR.G27709 Trifolium pratense
TPR.G36556 Trifolium pratense
TPR.G38631 Trifolium pratense
TPR.G38633 Trifolium pratense
TPR.G8923 Trifolium pratense
TPR.G9534 Trifolium pratense
TWI12G0105 Tripterygium wilfordii
TWI14G0654 Tripterygium wilfordii
TWI23G0337 Tripterygium wilfordii
TWI32G0638 Tripterygium wilfordii
TWI59G0604 Tripterygium wilfordii
TWI63G0228 Tripterygium wilfordii
unitig_62.g23593 Utricularia gibba
vmacro04322 Vaccinium macrocarpon
vmacro13048 Vaccinium macrocarpon
vmacro13071 Vaccinium macrocarpon
vmacro13159 Vaccinium macrocarpon
vmacro13182 Vaccinium macrocarpon
vmacro19014 Vaccinium macrocarpon
VMungo0331G0264 Vigna mungo
VMungo0331G1667 Vigna mungo
VMungo0540G1222 Vigna mungo
VMungo1309G2092 Vigna mungo
Zm00001eb024000 Zea mays
Zm00001eb068620 Zea mays
Zm00001eb257660 Zea mays
Zm00001eb306000 Zea mays
Zm00001eb432020 Zea mays

User provided reference genes

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