Gene: AT4G28080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G28080
  • Transcript Identifier AT4G28080.1
  • Gene Type Coding gene
  • Location Chr4 : 13948993-13957840 : negative

Gene Family Information

  • ID HOM05D001390
  • #Genes/#Species 451/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G28080.1
  • uniprot F4JKH6

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01320.2); Has 11837 Blast hits to 4947 proteins in 554 species: Archae - 95; Bacteria - 3252; Metazoa - 4987; Fungi - 1783; Plants - 350; Viruses - 14; Other Eukaryotes - 1356 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006996
IEA
Gene Ontologyorganelle organization
GO:0006996
IEA
InterProorganelle organization
GO:0019750
IMP
Gene Ontologychloroplast localization1
GO:0009737
IDA
GOA Databaseresponse to abscisic acid
GO:0007049
IEA
GOA Databasecell cycle

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding2
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISS, ISM
Gene Ontologynucleus
GO:0005829
ISS
Gene Ontologycytosol
GO:0005886
HDA
Gene Ontologyplasma membrane3
GO:0005737
IBA
Gene Ontologycytoplasm4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR033646 CLU central domain
IPR019734 Tetratricopeptide repeat
IPR027523 CLU domain containing protein
IPR028275 Clustered mitochondria protein, N-terminal
Mapman id Description
35.1 not assigned.annotated