If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ), 'gf_id' => 'HOM05D000896', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000896' ), 'data_identifier' => 'HOM05D000896', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000896', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '669', 'num_species' => '71' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p23440' => 'bna', 'A04p24120' => 'bna', 'A04p24270' => 'bna', 'A04p24380' => 'bna', 'A04p24520' => 'bna', 'A05p13690' => 'bna', 'A05p13800' => 'bna', 'A07p14610' => 'bna', 'A09p17570' => 'bna', 'A09p28140' => 'bna', 'A09p34210' => 'bna', 'A09p67340' => 'bna', 'A09p67360' => 'bna', 'A10p04160' => 'bna', 'A10p04380' => 'bna', 'A10p04620' => 'bna', 'Aa31LG1G8280' => 'aar', 'Aa31LG1G8310' => 'aar', 'Aa31LG1G8320' => 'aar', 'Aa31LG1G8390' => 'aar', 'Aa31LG1G8400' => 'aar', 'Aa31LG1G8430' => 'aar', 'Aa31LG5G5490' => 'aar', 'Aa31LG5G5500' => 'aar', 'Aa31sc1610G20' => 'aar', 'Actinidia04066' => 'ach', 'Actinidia14099' => 'ach', 'Actinidia23082' => 'ach', 'Actinidia23083' => 'ach', 'Actinidia23084' => 'ach', 'Actinidia39404' => 'ach', 'AL1G15520' => 'aly', 'AL1G15880' => 'aly', 'AL1G15890' => 'aly', 'AL1G46070' => 'aly', 'AL26U10040' => 'aly', 'AL3G40220' => 'aly', 'AL3G40610' => 'aly', 'AL3G40940' => 'aly', 'AL4G15340' => 'aly', 'AL4G26970' => 'aly', 'AL4G27140' => 'aly', 'AL4G27540' => 'aly', 'AL4G28060' => 'aly', 'AL4G28420' => 'aly', 'AL4G41370' => 'aly', 'AL5G29460' => 'aly', 'AL7G25460' => 'aly', 'AL7G52070' => 'aly', 'AL7G52080' => 'aly', 'Aqoxy1G01797' => 'aox', 'AT1G05615' => 'ath', 'AT1G05920' => 'ath', 'AT1G05930' => 'ath', 'AT1G32030' => 'ath', 'AT2G18810' => 'ath', 'AT2G24670' => 'ath', 'AT2G27410' => 'ath', 'AT2G31420' => 'ath', 'AT2G31720' => 'ath', 'AT2G31862' => 'ath', 'AT2G32645' => 'ath', 'AT2G32905' => 'ath', 'AT3G24850' => 'ath', 'AT3G49610' => 'ath', 'AT5G24050' => 'ath', 'AT5G38490' => 'ath', 'AT5G38500' => 'ath', 'Atru.chr1.4152' => 'acertr', 'Atru.chr13.110' => 'acertr', 'Atru.chr13.67' => 'acertr', 'Atru.chr3.2654' => 'acertr', 'Atru.chr3.2659' => 'acertr', 'Atru.chr3.2660' => 'acertr', 'BcaB01g01586' => 'bca', 'BcaB02g06835' => 'bca', 'BcaB02g06859' => 'bca', 'BcaB02g10411' => 'bca', 'BcaB02g10422' => 'bca', 'BcaB04g18266' => 'bca', 'BcaB06g28445' => 'bca', 'BcaB06g28447' => 'bca', 'BcaB06g28526' => 'bca', 'BcaB06g28527' => 'bca', 'BcaB06g28529' => 'bca', 'BcaB06g28546' => 'bca', 'BcaB06g28558' => 'bca', 'BcaB06g28569' => 'bca', 'BcaB06g29262' => 'bca', 'BcaB07g31212' => 'bca', 'BcaB07g32861' => 'bca', 'BcaC02g07220' => 'bca', 'BcaC02g07964' => 'bca', 'BcaC02g07983' => 'bca', 'BcaC02g07987' => 'bca', 'BcaC02g07988' => 'bca', 'BcaC02g11280' => 'bca', 'BcaC02g11294' => 'bca', 'BcaC02g11295' => 'bca', 'BcaC02g11296' => 'bca', 'BcaC02g11297' => 'bca', 'BcaC04g21105' => 'bca', 'BcaC04g21106' => 'bca', 'BcaC04g22224' => 'bca', 'BcaC05g24317' => 'bca', 'BcaC05g24319' => 'bca', 'BcaC05g24358' => 'bca', 'BcaC05g24385' => 'bca', 'BcaC05g27223' => 'bca', 'BcaC07g42123' => 'bca', 'BcaC07g42125' => 'bca', 'BcaC07g42126' => 'bca', 'BcaNung01491' => 'bca', 'BolC1t01330H' => 'bol', 'BolC4t23337H' => 'bol', 'BolC4t23339H' => 'bol', 'BolC4t23373H' => 'bol', 'BolC4t27481H' => 'bol', 'BolC4t27574H' => 'bol', 'BolC4t27576H' => 'bol', 'BolC4t27590H' => 'bol', 'BolC4t27592H' => 'bol', 'BolC4t27593H' => 'bol', 'BolC4t27609H' => 'bol', 'BolC4t27624H' => 'bol', 'BolC4t28489H' => 'bol', 'BolC5t29156H' => 'bol', 'BolC5t29176H' => 'bol', 'BolC5t29203H' => 'bol', 'BolC5t31856H' => 'bol', 'BolC8t52693H' => 'bol', 'BolC8t52695H' => 'bol', 'BolC9t55092H' => 'bol', 'BolC9t56400H' => 'bol', 'BraA04t17871Z' => 'bra', 'BraA04t17932Z' => 'bra', 'BraA04t17946Z' => 'bra', 'BraA04t17955Z' => 'bra', 'BraA04t17973Z' => 'bra', 'BraA04t18691Z' => 'bra', 'BraA05t20306Z' => 'bra', 'BraA05t20317Z' => 'bra', 'BraA09t37387Z' => 'bra', 'BraA09t38376Z' => 'bra', 'BraA09t38969Z' => 'bra', 'BraA09t42065Z' => 'bra', 'BraA09t42067Z' => 'bra', 'BraA10t42685Z' => 'bra', 'BraA10t42705Z' => 'bra', 'BraA10t42727Z' => 'bra', 'C04p17890' => 'bna', 'C04p17910' => 'bna', 'C04p18170' => 'bna', 'C04p59750' => 'bna', 'C04p60830' => 'bna', 'C04p60850' => 'bna', 'C04p61020' => 'bna', 'C04p61050' => 'bna', 'C04p61060' => 'bna', 'C04p61100' => 'bna', 'C04p61210' => 'bna', 'C04p61400' => 'bna', 'C04p69900' => 'bna', 'C05p03790' => 'bna', 'C05p03980' => 'bna', 'C05p04280' => 'bna', 'C05p31330' => 'bna', 'C08p51650' => 'bna', 'C08p51670' => 'bna', 'C09p21870' => 'bna', 'C09p35640' => 'bna', 'C09p74800' => 'bna', 'C09p74810' => 'bna', 'CAN.G1140.8' => 'can', 'CAN.G1266.3' => 'can', 'CAN.G137.39' => 'can', 'CAN.G476.8' => 'can', 'CANSAT11G2686' => 'cansat', 'CANSAT80G0091' => 'cansat', 'CANSAT80G0323' => 'cansat', 'CANSAT80G2420' => 'cansat', 'CANSAT80G2647' => 'cansat', 'CANSAT80G2725' => 'cansat', 'CARHR005050' => 'chi', 'CARHR005450' => 'chi', 'CARHR101530' => 'chi', 'CARHR101580' => 'chi', 'CARHR101880' => 'chi', 'CARHR125380' => 'chi', 'CARHR125400' => 'chi', 'CARHR217360' => 'chi', 'CARHR263700' => 'chi', 'CARHR291820' => 'chi', 'CARHR291830' => 'chi', 'Carub.0001s0495' => 'cru', 'Carub.0001s0529' => 'cru', 'Carub.0001s0530' => 'cru', 'Carub.0003s2555' => 'cru', 'Carub.0004s0407' => 'cru', 'Carub.0004s1274' => 'cru', 'Carub.0004s1302' => 'cru', 'Carub.0004s1350' => 'cru', 'Carub.0004s1399' => 'cru', 'Carub.0004s1432' => 'cru', 'Carub.0004s2520' => 'cru', 'Carub.0007s1353' => 'cru', 'Carub.0007s3741' => 'cru', 'Carub.0322s0001' => 'cru', 'Ca_13757_v3' => 'car', 'Ca_22951_v3' => 'car', 'Ca_22963_v3' => 'car', 'Ca_22965_v3' => 'car', 'Ca_23866_v3' => 'car', 'Cfa002709' => 'cfa', 'Cfa002712' => 'cfa', 'Cfa004691' => 'cfa', 'Cfa004709' => 'cfa', 'Cfa004767' => 'cfa', 'Cfa004768' => 'cfa', 'Cfa004777' => 'cfa', 'Cfa004778' => 'cfa', 'Cfa004779' => 'cfa', 'Cfa004780' => 'cfa', 'Cfa004781' => 'cfa', 'Cfa004783' => 'cfa', 'Cfa004784' => 'cfa', 'Cfa004785' => 'cfa', 'Cfa004786' => 'cfa', 'Cfa005655' => 'cfa', 'Cfa005673' => 'cfa', 'Cfa007850' => 'cfa', 'Cfa010183' => 'cfa', 'Cfa016216' => 'cfa', 'Cfa016248' => 'cfa', 'Cfa016249' => 'cfa', 'Cfa018818' => 'cfa', 'Ciclev10018218m.g' => 'ccl', 'Ciclev10029971m.g' => 'ccl', 'Ciclev10030095m.g' => 'ccl', 'Ciclev10030162m.g' => 'ccl', 'Ciclev10030180m.g' => 'ccl', 'Ciclev10030266m.g' => 'ccl', 'Ciclev10030359m.g' => 'ccl', 'Ciclev10033660m.g' => 'ccl', 'CiPaw.04G096300' => 'cil', 'CiPaw.04G096400' => 'cil', 'CiPaw.14G107900' => 'cil', 'ClCG01G006230' => 'cla', 'ClCG01G006250' => 'cla', 'ClCG02G017000' => 'cla', 'ClCG04G005250' => 'cla', 'ClCG08G015060' => 'cla', 'ClCG08G015080' => 'cla', 'ClCG11G011860' => 'cla', 'COL.COLO4_00230' => 'col', 'COL.COLO4_02946' => 'col', 'COL.COLO4_18803' => 'col', 'COL.COLO4_19258' => 'col', 'COL.COLO4_20383' => 'col', 'COL.COLO4_21702' => 'col', 'COL.COLO4_23622' => 'col', 'COL.COLO4_33114' => 'col', 'Cpa.g.sc13.154' => 'cpa', 'Cpa.g.sc1360.2' => 'cpa', 'Cpa.g.sc3.72' => 'cpa', 'Cpa.g.sc4.105' => 'cpa', 'Cpa.g.sc4.67' => 'cpa', 'CsaV3_2G028710' => 'csa', 'CsaV3_2G029240' => 'csa', 'CsaV3_4G013340' => 'csa', 'CsaV3_5G027950' => 'csa', 'CsaV3_5G027980' => 'csa', 'CsaV3_5G028220' => 'csa', 'CsaV3_5G028430' => 'csa', 'CsaV3_5G028440' => 'csa', 'DCAR_008698' => 'dca', 'DCAR_013087' => 'dca', 'DCAR_025815' => 'dca', 'Dinv08221' => 'din', 'Dinv21550' => 'din', 'Dinv21551' => 'din', 'Dinv32228' => 'din', 'Dinv40964' => 'din', 'Dinv40965' => 'din', 'Duzib106G1665' => 'dzi', 'Duzib114G0938' => 'dzi', 'Duzib114G1002' => 'dzi', 'Duzib138G1324' => 'dzi', 'Duzib138G1815' => 'dzi', 'Duzib177G0732' => 'dzi', 'Duzib177G1127' => 'dzi', 'Duzib177G1220' => 'dzi', 'Duzib251G0081' => 'dzi', 'Duzib251G0257' => 'dzi', 'Duzib251G0772' => 'dzi', 'ECA232G1083' => 'eca', 'ECA233G1548' => 'eca', 'ECA233G4381' => 'eca', 'ECA233G6213' => 'eca', 'ECA234G1615' => 'eca', 'ECA234G2554' => 'eca', 'ECA234G3254' => 'eca', 'ECA234G3325' => 'eca', 'ECA234G3506' => 'eca', 'ECA234G4629' => 'eca', 'ECA234G4673' => 'eca', 'ECA234G4860' => 'eca', 'ECA246G1822' => 'eca', 'Eucgr.B00726' => 'egr', 'Eucgr.B00728' => 'egr', 'Eucgr.I00811' => 'egr', 'Eucgr.I00818' => 'egr', 'Eucgr.I00848' => 'egr', 'Eucgr.I00855' => 'egr', 'Eucgr.I00861' => 'egr', 'Eucgr.K01123' => 'egr', 'Eucgr.L00710' => 'egr', 'FAN01G0184' => 'fan', 'FAN01G0395' => 'fan', 'FAN01G2558' => 'fan', 'FAN03G0356' => 'fan', 'FAN03G1413' => 'fan', 'FAN03G2502' => 'fan', 'FAN04G0317' => 'fan', 'FAN04G3038' => 'fan', 'FAN05G1892' => 'fan', 'FAN05G1921' => 'fan', 'FAN06G0415' => 'fan', 'FAN06G0427' => 'fan', 'FAN06G0727' => 'fan', 'FAN06G5008' => 'fan', 'FAN06G5054' => 'fan', 'FAN06G5122' => 'fan', 'FAN07G2864' => 'fan', 'FAN08G1294' => 'fan', 'FAN08G3054' => 'fan', 'FAN10G0733' => 'fan', 'FAN10G2906' => 'fan', 'FAN10G3338' => 'fan', 'FAN10G3722' => 'fan', 'FAN12G0984' => 'fan', 'FAN13G1468' => 'fan', 'FAN13G2118' => 'fan', 'FAN13G2450' => 'fan', 'FAN13G2868' => 'fan', 'FAN14G0662' => 'fan', 'FAN14G1805' => 'fan', 'FAN17G1144' => 'fan', 'FAN18G1708' => 'fan', 'FAN18G2330' => 'fan', 'FAN22G1495' => 'fan', 'FvH4_5g16202' => 'fve', 'FvH4_5g16210' => 'fve', 'FvH4_6g01440' => 'fve', 'FvH4_7g12330' => 'fve', 'FvH4_7g13550' => 'fve', 'FvH4_7g31340' => 'fve', 'Glyma.01G113600' => 'gma', 'Glyma.01G113800' => 'gma', 'Glyma.01G187000' => 'gma', 'Glyma.01G187100' => 'gma', 'Glyma.02G291400' => 'gma', 'Glyma.03G105900' => 'gma', 'Glyma.11G055000' => 'gma', 'Gohir.A01G161180' => 'ghi', 'Gohir.A01G163850' => 'ghi', 'Gohir.A02G044702' => 'ghi', 'Gohir.A02G048201' => 'ghi', 'Gohir.A07G201750' => 'ghi', 'Gohir.A12G043480' => 'ghi', 'Gohir.A12G043560' => 'ghi', 'Gohir.A12G043720' => 'ghi', 'Gohir.A13G226166' => 'ghi', 'Gohir.D01G148400' => 'ghi', 'Gohir.D02G050666' => 'ghi', 'Gohir.D02G050732' => 'ghi', 'Gohir.D02G053350' => 'ghi', 'Gohir.D07G208050' => 'ghi', 'Gohir.D11G314050' => 'ghi', 'Gohir.D12G042950' => 'ghi', 'Gohir.D12G043450' => 'ghi', 'Gohir.D13G055275' => 'ghi', 'Gohir.D13G231533' => 'ghi', 'Gohir.D13G231566' => 'ghi', 'Gorai.005G056000' => 'gra', 'Gorai.008G045000' => 'gra', 'Gorai.008G045100' => 'gra', 'Gorai.008G045700' => 'gra', 'Gorai.013G062600' => 'gra', 'HanXRQChr03g0076911' => 'han', 'HanXRQChr08g0217011' => 'han', 'HanXRQChr08g0217051' => 'han', 'HanXRQChr11g0320741' => 'han', 'HanXRQChr16g0528541' => 'han', 'HanXRQChr16g0528661' => 'han', 'HanXRQChr16g0528671' => 'han', 'Haze_00191' => 'cav', 'Haze_00192' => 'cav', 'Haze_00193' => 'cav', 'Haze_00194' => 'cav', 'Haze_00227' => 'cav', 'Haze_00228' => 'cav', 'Haze_18942' => 'cav', 'Haze_23573' => 'cav', 'Haze_24984' => 'cav', 'Haze_25000' => 'cav', 'Hma1.2p1_0128F.1_g059930' => 'hma', 'Lalb_Chr09g0329091' => 'lal', 'Lj4g0007022' => 'lja', 'Lsat_1_v5_gn_3_76781' => 'lsa', 'Lsat_1_v5_gn_3_76801' => 'lsa', 'Lsat_1_v5_gn_4_16520' => 'lsa', 'Lsat_1_v5_gn_4_16540' => 'lsa', 'Lsat_1_v5_gn_4_16560' => 'lsa', 'Lsat_1_v5_gn_4_20560' => 'lsa', 'Lsat_1_v5_gn_4_20580' => 'lsa', 'Lsat_1_v5_gn_4_20600' => 'lsa', 'Lsat_1_v5_gn_4_20620' => 'lsa', 'Lsat_1_v5_gn_4_20740' => 'lsa', 'Lsat_1_v5_gn_4_20940' => 'lsa', 'Lsat_1_v5_gn_4_20960' => 'lsa', 'Lsat_1_v5_gn_4_20980' => 'lsa', 'Lsat_1_v5_gn_4_21000' => 'lsa', 'Lsat_1_v5_gn_4_21060' => 'lsa', 'Manes.09G146800' => 'mes', 'Manes.09G155401' => 'mes', 'Manes.14G006500' => 'mes', 'Manes.15G190800' => 'mes', 'MD01G1052000' => 'mdo', 'MD01G1220100' => 'mdo', 'MD02G1271600' => 'mdo', 'MD07G1290000' => 'mdo', 'Medtr3g452640' => 'mtr', 'Medtr4g068060' => 'mtr', 'Medtr5g007890' => 'mtr', 'Medtr5g007910' => 'mtr', 'Medtr5g007920' => 'mtr', 'Medtr5g007950' => 'mtr', 'Medtr5g092880' => 'mtr', 'Medtr7g098870' => 'mtr', 'MELO3C001637.2' => 'cme', 'MELO3C005256.2' => 'cme', 'MELO3C005282.2' => 'cme', 'MELO3C005283.2' => 'cme', 'MELO3C005306.2' => 'cme', 'MELO3C008795.2' => 'cme', 'MELO3C010943.2' => 'cme', 'MELO3C010986.2' => 'cme', 'MELO3C010987.2' => 'cme', 'MELO3C027961.2' => 'cme', 'MELO3C031059.2' => 'cme', 'MELO3C033980.2' => 'cme', 'Migut.A00355' => 'egut', 'Migut.D01474' => 'egut', 'Migut.G01061' => 'egut', 'Migut.G01064' => 'egut', 'Migut.G01089' => 'egut', 'Migut.K01123' => 'egut', 'Migut.L00847' => 'egut', 'Migut.M01844' => 'egut', 'Migut.M01845' => 'egut', 'Migut.M01852' => 'egut', 'Migut.M01853' => 'egut', 'Nitab4.5_0000138g0240' => 'nta', 'Nitab4.5_0000240g0100' => 'nta', 'Nitab4.5_0000264g0110' => 'nta', 'Nitab4.5_0000320g0170' => 'nta', 'Nitab4.5_0001582g0060' => 'nta', 'Nitab4.5_0001681g0040' => 'nta', 'Nitab4.5_0007441g0030' => 'nta', 'Nitab4.5_0008084g0030' => 'nta', 'Nitab4.5_0008682g0010' => 'nta', 'Nitab4.5_0011772g0030' => 'nta', 'Nn1g05625' => 'nnu', 'Nn1g05626' => 'nnu', 'Oeu009475.1' => 'oeu', 'Oeu027558.1' => 'oeu', 'Oeu027561.1' => 'oeu', 'Oeu027562.1' => 'oeu', 'Oeu028491.1' => 'oeu', 'Oeu055686.1' => 'oeu', 'Oeu063792.1' => 'oeu', 'Peaxi162Scf00168g00169' => 'pax', 'Peaxi162Scf00177g00063' => 'pax', 'Peaxi162Scf00198g01526' => 'pax', 'Peaxi162Scf00367g00043' => 'pax', 'Peaxi162Scf00367g00413' => 'pax', 'Peaxi162Scf00493g00048' => 'pax', 'Peaxi162Scf00765g00215' => 'pax', 'Peaxi162Scf01732g00010' => 'pax', 'Peaxi162Scf41204g00001' => 'pax', 'PGR004G0640' => 'pgr', 'PGR004G0789' => 'pgr', 'PGR004G1318' => 'pgr', 'PGR044G0072' => 'pgr', 'PGR044G1241' => 'pgr', 'PGR044G1601' => 'pgr', 'PGR102G0562' => 'pgr', 'PGR102G2336' => 'pgr', 'PGR119G0007' => 'pgr', 'PGR119G0044' => 'pgr', 'PGSC0003DMG400013093' => 'stu', 'PGSC0003DMG400014860' => 'stu', 'PGSC0003DMG400034363' => 'stu', 'PGSC0003DMG400035412' => 'stu', 'PGSC0003DMG400041012' => 'stu', 'PGSC0003DMG400043436' => 'stu', 'PGSC0003DMG400043530' => 'stu', 'PGSC0003DMG400043561' => 'stu', 'Phvul.006G044100' => 'pvu', 'Phvul.006G044200' => 'pvu', 'Phvul.006G044300' => 'pvu', 'Phvul.008G194000' => 'pvu', 'Phvul.008G266500' => 'pvu', 'Phvul.010G000400' => 'pvu', 'Potri.015G014200' => 'ptr', 'Potri.015G014700' => 'ptr', 'Prupe.1G534500' => 'ppe', 'Prupe.2G154200' => 'ppe', 'Prupe.2G159700' => 'ppe', 'Prupe.2G161700' => 'ppe', 'Prupe.2G162000' => 'ppe', 'Prupe.2G278500' => 'ppe', 'Prupe.6G353200' => 'ppe', 'Prupe.6G353300' => 'ppe', 'Prupe.6G353400' => 'ppe', 'Prupe.6G355100' => 'ppe', 'Psat0s5759g0040' => 'psa', 'Psat2g011800' => 'psa', 'Psat4g120360' => 'psa', 'Psat4g122800' => 'psa', 'Psat4g124560' => 'psa', 'Psat5g258240' => 'psa', 'QL02p098711' => 'qlo', 'QL03p025843' => 'qlo', 'QL03p026259' => 'qlo', 'QL03p026378' => 'qlo', 'QL03p038238' => 'qlo', 'QL03p039592' => 'qlo', 'QL03p039811' => 'qlo', 'QL03p040295' => 'qlo', 'QL03p040401' => 'qlo', 'QL03p040404' => 'qlo', 'QL03p040413' => 'qlo', 'QL03p040416' => 'qlo', 'QL03p040474' => 'qlo', 'QL03p040822' => 'qlo', 'QL03p040845' => 'qlo', 'QL05p083988' => 'qlo', 'QL09p018688' => 'qlo', 'QL11p023124' => 'qlo', 'QL11p026760' => 'qlo', 'QL11p026956' => 'qlo', 'QL11p027085' => 'qlo', 'QL11p027123' => 'qlo', 'QL11p027543' => 'qlo', 'QL11p027653' => 'qlo', 'RcHm_v2.0_Chr1g0380921' => 'rch', 'RcHm_v2.0_Chr1g0380951' => 'rch', 'RcHm_v2.0_Chr4g0415241' => 'rch', 'Rhsim02G0210600' => 'rsi', 'Rhsim02G0210800' => 'rsi', 'Rhsim02G0211900' => 'rsi', 'Rhsim02G0212000' => 'rsi', 'Rhsim02G0212100' => 'rsi', 'Rhsim02G0212200' => 'rsi', 'Rhsim06G0192500' => 'rsi', 'Sabra15G0011700' => 'sbr', 'SalBow1G3201' => 'sbo', 'SalBow1G6889' => 'sbo', 'SalBow4G2196' => 'sbo', 'Sc07g0008340' => 'sci', 'Sc07g0008350' => 'sci', 'Sc07g0008470' => 'sci', 'Sc09g0004860' => 'sci', 'Sc09g0004950' => 'sci', 'Sc09g0004960' => 'sci', 'Sc09g0004970' => 'sci', 'Sc09g0005030' => 'sci', 'Sc22g0001840' => 'sci', 'Sc22g0001900' => 'sci', 'Sc22g0001910' => 'sci', 'Sed0001342' => 'sed', 'Sed0005291' => 'sed', 'Sed0008121' => 'sed', 'Sed0014459' => 'sed', 'Sed0014912' => 'sed', 'Sed0016322' => 'sed', 'Sed0019902' => 'sed', 'Sed0021385' => 'sed', 'SGA_v2.0_scaffold257G45696' => 'sas', 'SGA_v2.0_scaffold257G45705' => 'sas', 'SGA_v2.0_scaffold25G10916' => 'sas', 'SGA_v2.0_scaffold56G20011' => 'sas', 'Solyc02g032210.1' => 'sly', 'Solyc02g032220.1' => 'sly', 'Solyc02g032270.1' => 'sly', 'Solyc02g032290.1' => 'sly', 'Solyc03g119560.1' => 'sly', 'Solyc11g005210.1' => 'sly', 'Sopen02g010560' => 'spe', 'Sopen02g010570' => 'spe', 'Sopen02g010620' => 'spe', 'Sopen02g010630' => 'spe', 'Sopen03g038390' => 'spe', 'Sopen11g001210' => 'spe', 'Sopen11g001220' => 'spe', 'Sp1g04320' => 'spa', 'Sp1g04760' => 'spa', 'Sp1g31560' => 'spa', 'Sp3g30440' => 'spa', 'Sp4g04670' => 'spa', 'Sp4g07360' => 'spa', 'Sp4g13910' => 'spa', 'Sp4g14210' => 'spa', 'Sp6g07490' => 'spa', 'SpUn0479_0020' => 'spa', 'SpUn1102_0010' => 'spa', 'TAR168G0001' => 'tar', 'TAR365G1003' => 'tar', 'TAR369G1157' => 'tar', 'TAR374G0825' => 'tar', 'TAR375G0528' => 'tar', 'TAR636G1058' => 'tar', 'THA.LOC104801542' => 'tha', 'THA.LOC104824133' => 'tha', 'THA.LOC104825400' => 'tha', 'THA.LOC104826207' => 'tha', 'THA.LOC104827386' => 'tha', 'THA.LOC104827387' => 'tha', 'THA.LOC104827390' => 'tha', 'THA.LOC104827391' => 'tha', 'THA.LOC104827678' => 'tha', 'Thecc.03G196400' => 'tca', 'Thecc.03G196900' => 'tca', 'Thecc.03G197000' => 'tca', 'Thecc.04G110000' => 'tca', 'Thecc.10G126400' => 'tca', 'Thecc.10G126800' => 'tca', 'Thecc.10G130500' => 'tca', 'Thecc.10G130700' => 'tca', 'Thhalv10009348m.g' => 'esa', 'Thhalv10009508m.g' => 'esa', 'Thhalv10009706m.g' => 'esa', 'Thhalv10009730m.g' => 'esa', 'Thhalv10009984m.g' => 'esa', 'Thhalv10012233m.g' => 'esa', 'Thhalv10012343m.g' => 'esa', 'Thhalv10017854m.g' => 'esa', 'Thhalv10017938m.g' => 'esa', 'Thhalv10022269m.g' => 'esa', 'Thhalv10024065m.g' => 'esa', 'Thhalv10029136m.g' => 'esa', 'Thhalv10029259m.g' => 'esa', 'Thhalv10029469m.g' => 'esa', 'Thhalv10029471m.g' => 'esa', 'TPR.G1144' => 'tpr', 'TPR.G1152' => 'tpr', 'TPR.G1176' => 'tpr', 'TPR.G12242' => 'tpr', 'TPR.G17212' => 'tpr', 'TPR.G28339' => 'tpr', 'TPR.G36354' => 'tpr', 'TPR.G9525' => 'tpr', 'TWI34G0441' => 'twi', 'TWI34G1439' => 'twi', 'TWI60G0512' => 'twi', 'TWI75G1398' => 'twi', 'VMungo0647G0169' => 'vmu' ) $gf_id = 'HOM05D000896' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000896' ) $data_identifier = 'HOM05D000896' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 39, 'aar' => (int) 9, 'ach' => (int) 6, 'aly' => (int) 19, 'aox' => (int) 1, 'ath' => (int) 17, 'acertr' => (int) 6, 'bca' => (int) 39, 'bol' => (int) 21, 'bra' => (int) 16, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 11, 'cru' => (int) 14, 'car' => (int) 5, 'cfa' => (int) 23, 'ccl' => (int) 8, 'cil' => (int) 3, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 8, 'dca' => (int) 3, 'din' => (int) 6, 'dzi' => (int) 11, 'eca' => (int) 13, 'egr' => (int) 9, 'fan' => (int) 34, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 20, 'gra' => (int) 5, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 1, 'lal' => (int) 1, 'lja' => (int) 1, 'lsa' => (int) 15, 'mes' => (int) 4, 'mdo' => (int) 4, 'mtr' => (int) 8, 'cme' => (int) 12, 'egut' => (int) 11, 'nta' => (int) 10, 'nnu' => (int) 2, 'oeu' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 2, 'ppe' => (int) 10, 'psa' => (int) 6, 'qlo' => (int) 24, 'rch' => (int) 3, 'rsi' => (int) 7, 'sbr' => (int) 1, 'sbo' => (int) 3, 'sci' => (int) 11, 'sed' => (int) 8, 'sas' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 11, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 15, 'tpr' => (int) 8, 'twi' => (int) 4, 'vmu' => (int) 1 ) $gf_gene_species = 'vmu' $gf_gene_id = 'VMungo0647G0169' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 0